Experiment set36IT069 for Pseudomonas putida KT2440

Compare to:

R2A with Vogels_fungal_media 0.2X

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.3 -3.6 Glutamate 5-kinase compare
PP_0856 -4.7 -7.1 conserved lipoprotein of unknown function compare
PP_4265 -4.6 -3.2 DNA-binding transcriptional dual regulator compare
PP_4799 -3.8 -2.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4874 -3.7 -2.5 50S ribosomal protein L9 compare
PP_0719 -3.3 -2.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5095 -3.3 -2.9 pyrroline-5-carboxylate reductase compare
PP_1237 -3.2 -3.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4700 -3.1 -5.4 pantothenate synthetase compare
PP_5329 -2.9 -4.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4546 -2.8 -6.1 ATP-dependent helicase HrpA compare
PP_4723 -2.8 -1.9 Carbamoyl-phosphate synthase large chain compare
PP_1994 -2.8 -3.3 tRNA pseudouridine (38-40)synthase compare
PP_4693 -2.8 -5.7 RNA polymerase-binding transcription factor DksA compare
PP_4804 -2.8 -5.3 RlpA-like lipoprotein compare
PP_2402 -2.7 -3.6 putative Sensor histidine kinase compare
PP_4004 -2.6 -6.5 DNA translocase FtsK compare
PP_4895 -2.5 -5.5 tRNA dimethylallyltransferase compare
PP_4724 -2.5 -2.4 Carbamoyl-phosphate synthase small chain compare
PP_3999 -2.4 -8.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2121 -2.4 -2.3 putative Lipoprotein compare
PP_4560 -2.3 -6.4 putative Ribonuclease BN compare
PP_1000 -2.3 -7.1 ornithine carbamoyltransferase, catabolic compare
PP_1002 -2.3 -6.5 arginine/ornithine antiporter compare
PP_4902 -2.2 -2.8 Oligoribonuclease compare
PP_1001 -2.1 -4.9 arginine deiminase compare
PP_1216 -2.1 -4.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4999 -2.1 -1.4 dihydroorotase-like protein compare
PP_1217 -2.1 -5.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1654 -1.9 -3.8 cysteine synthase B compare
PP_1783 -1.9 -2.7 dTDP-glucose pyrophosphorylase compare
PP_0999 -1.9 -3.2 carbamate kinase compare
PP_1353 -1.9 -3.4 conserved membrane protein of unknown function compare
PP_1733 -1.8 -3.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_4120 -1.8 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_1055 -1.7 -2.0 Type II secretion pathway protein GspN compare
PP_1912 -1.7 -4.8 Phosphate acyltransferase compare
PP_5289 -1.7 -3.1 Acetylglutamate kinase compare
PP_0833 -1.7 -2.7 queuine tRNA-ribosyltransferase compare
PP_2370 -1.7 -3.4 conserved protein of unknown function compare
PP_5328 -1.7 -3.1 putative phosphate transport system permease protein compare
PP_4642 -1.7 -1.7 Cyclic diguanosine monophosphate-binding protein compare
PP_2371 -1.6 -4.4 Sulphite reductase hemoprotein, beta subunit compare
PP_1664 -1.6 -3.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_1215 -1.6 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_0998 -1.6 -5.4 conserved protein of unknown function compare
PP_1632 -1.6 -3.0 conserved protein of unknown function compare
PP_0630 -1.5 -1.7 DNA gyrase inhibitor YacG compare
PP_2414 -1.5 -2.7 conserved exported protein of unknown function compare
PP_1734 -1.5 -5.0 Probable septum site-determining protein MinC compare
PP_0393 -1.5 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4964 -1.5 -3.1 D-erythrose 4-phosphate dehydrogenase compare
PP_4214 -1.4 -5.1 pyoverdine biosynthesis related protein compare
PP_4129 -1.4 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0164 -1.4 -4.3 conserved protein of unknown function compare
PP_0846 -1.4 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_1232 -1.3 -5.9 conserved exported protein of unknown function compare
PP_0735 -1.3 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_4126 -1.3 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_0339 -1.3 -3.3 Pyruvate dehydrogenase E1 component compare
PP_t29 -1.3 -2.8 tRNA-Ala compare
PP_5652 -1.3 -3.3 conserved protein of unknown function, phage origin compare
PP_2720 -1.3 -1.5 conserved protein of unknown function compare
PP_4880 -1.2 -6.9 exoribonuclease R compare
PP_5393 -1.2 -1.8 putative metal-binding chaperone compare
PP_1208 -1.2 -1.7 conserved protein of unknown function, SlyX family compare
PP_5706 -1.2 -2.1 Sec translocation complex - SecG subunit compare
PP_2336 -1.2 -3.6 aconitate hydratase 1 compare
PP_0001 -1.2 -1.7 probable chromosome-partitioning protein compare
PP_4124 -1.2 -3.3 NADH-quinone oxidoreductase subunit G compare
PP_5155 -1.2 -2.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4917 -1.2 -3.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3902 -1.2 -2.2 conserved protein of unknown function compare
PP_4131 -1.2 -3.4 NADH-quinone oxidoreductase subunit N compare
PP_0640 -1.1 -2.1 conserved protein of unknown function compare
PP_2718 -1.1 -2.7 arsenic resistance transcriptional regulator compare
PP_3876 -1.1 -1.9 conserved protein of unknown function compare
PP_5327 -1.1 -2.4 putative phosphate ABC transporter, permease subunit compare
PP_1022 -1.1 -4.5 glucose 6-phosphate-1-dehydrogenase compare
PP_4058 -1.1 -6.3 1,4-alpha-glucan branching enzyme compare
PP_0220 -1.1 -2.1 methionine import ATP-binding protein metN2 compare
PP_2633 -1.1 -1.3 conserved protein of unknown function compare
PP_0401 -1.0 -2.2 Ribosomal RNA small subunit methyltransferase A compare
PP_3471 -1.0 -3.9 conserved protein of unknown function compare
PP_0513 -1.0 -2.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1187 -1.0 -4.2 sensor protein compare
PP_5185 -1.0 -5.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0677 -1.0 -3.5 putative Lipoprotein compare
PP_1186 -1.0 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_0003 -1.0 -2.0 16S RNA methyltransferase compare
PP_2328 -1.0 -2.7 Phosphoadenosine phosphosulfate reductase compare
PP_3840 -1.0 -1.6 conserved protein of unknown function compare
PP_1318 -1.0 -4.2 Cytochrome b compare
PP_0127 -1.0 -3.0 Thiol:disulfide interchange protein compare
PP_2307 -1.0 -1.1 conserved protein of unknown function compare
PP_0184 -1.0 -4.1 Argininosuccinate lyase compare
PP_1935 -0.9 -2.4 Transcriptional regulator, Cro/CI family compare
PP_5310 -0.9 -4.0 junction-specific ATP-dependent DNA helicase compare
PP_1468 -0.9 -1.5 Tyrosine recombinase XerD compare
PP_2426 -0.9 -3.6 coniferyl alcohol dehydrogenase compare
PP_2341 -0.9 -1.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4262 -0.9 -1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4342 -0.9 -2.7 flagellar synthesis regulator, putative ATPase compare
PP_3580 -0.9 -1.0 conserved protein of unknown function compare
PP_4251 -0.9 -1.7 cytochrome c oxidase subunit, cbb3-type compare
PP_1198 -0.9 -2.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5093 -0.8 -1.2 twitching motility protein compare
PP_0291 -0.8 -2.9 conserved protein of unknown function compare
PP_3770 -0.8 -2.2 conserved protein of unknown function compare
PP_1088 -0.8 -4.9 Argininosuccinate synthase compare
PP_4008 -0.8 -3.4 ATP-dependent serine protease compare
PP_3449 -0.8 -1.0 conserved exported protein of unknown function compare
PP_4098 -0.8 -0.9 UvrABC system protein C compare
PP_4121 -0.8 -2.5 NADH-quinone oxidoreductase subunit C/D compare
PP_1214 -0.8 -1.5 putative transcriptional regulatory protein compare
PP_2932 -0.8 -3.1 Amidase family protein compare
PP_5202 -0.8 -1.6 putative cell division protein compare
PP_0949 -0.8 -3.3 putative ATP-binding protein UPF0042 compare
PP_2172 -0.8 -1.9 conserved exported protein of unknown function compare
PP_4909 -0.8 -2.7 phosphoserine phosphatase compare
PP_1317 -0.8 -2.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1493 -0.8 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5090 -0.8 -1.3 putative cell division protein compare
PP_2327 -0.8 -3.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1076 -0.8 -3.4 aquaglyceroporin compare
PP_4997 -0.8 -1.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5225 -0.8 -1.1 frataxin compare
PP_1788 -0.8 -2.2 conserved protein of unknown function compare
PP_5216 -0.8 -1.2 exopolyphosphatase compare
PP_4406 -0.8 -1.5 conserved protein of unknown function compare
PP_3916 -0.8 -2.6 conserved protein of unknown function compare
PP_5486 -0.8 -1.3 conserved protein of unknown function compare
PP_0872 -0.7 -3.5 Peptide chain release factor 3 compare
PP_2416 -0.7 -0.7 putative Iron ABC transporter, ATP-binding protein compare
PP_5058 -0.7 -2.4 Carboxy-terminal-processing protease compare
PP_0266 -0.7 -3.3 Agmatine deiminase compare
PP_3315 -0.7 -2.1 conserved membrane protein of unknown function compare
PP_3333 -0.7 -2.2 conserved protein of unknown function compare
PP_4925 -0.7 -1.6 conserved protein of unknown function compare
PP_0758 -0.7 -3.6 conserved protein of unknown function compare
PP_2580 -0.7 -1.8 conserved protein of unknown function compare
PP_2537 -0.7 -2.4 conserved protein of unknown function compare
PP_5583 -0.7 -1.5 conserved protein of unknown function compare
PP_1005 -0.7 -2.7 Heme oxygenase compare
PP_1366 -0.7 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_4988 -0.7 -3.3 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3241 -0.7 -0.9 conserved exported protein of unknown function compare
PP_0888 -0.7 -1.7 Photosynthetic apparatus regulatory protein RegA compare
PP_2742 -0.7 -2.5 conserved protein of unknown function compare
PP_1185 -0.7 -3.3 Outer membrane protein H1 compare
PP_1319 -0.7 -3.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1656 -0.7 -2.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_1906 -0.7 -2.4 ribosomal large subunit pseudouridine synthase C compare
PP_1503 -0.7 -1.1 conserved protein of unknown function compare
PP_1938 -0.7 -1.6 conserved protein of unknown function compare
PP_0150 -0.7 -2.8 conserved exported protein of unknown function compare
PP_2441 -0.7 -1.6 conserved protein of unknown function compare
PP_3481 -0.7 -1.5 conserved exported protein of unknown function compare
PP_3318 -0.7 -1.4 conserved protein of unknown function compare
PP_0673 -0.7 -1.1 conserved protein of unknown function compare
PP_4942 -0.7 -1.7 conserved protein of unknown function compare
PP_0182 -0.7 -1.8 conserved protein of unknown function compare
PP_4204 -0.6 -2.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4989 -0.6 -1.9 Protein PilJ compare
PP_4994 -0.6 -2.8 conserved protein of unknown function compare
PP_2597 -0.6 -2.3 conserved protein of unknown function compare
PP_4720 -0.6 -1.9 putative RNA binding protein compare
PP_4792 -0.6 -2.1 conserved exported protein of unknown function compare
PP_3862 -0.6 -1.5 putative Phage assembly protein compare
PP_2550 -0.6 -2.2 putative transcriptional regulatory protein compare
PP_1404 -0.6 -1.5 conserved protein of unknown function compare
PP_5525 -0.6 -1.7 conserved exported protein of unknown function compare
PP_0978 -0.6 -2.4 conserved protein of unknown function compare
PP_4859 -0.6 -1.4 Transcriptional regulator, TetR family compare
PP_2675 -0.6 -1.3 Cytochrome c-type protein compare
PP_1629 -0.6 -2.6 Protein RecA compare
PP_0290 -0.6 -3.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0832 -0.6 -1.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4130 -0.6 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2403 -0.6 -1.0 Chemotaxis protein CheY compare
PP_4150 -0.6 -2.5 microcin C transporter - ATP binding subunit compare
PP_4253 -0.6 -1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_2475 -0.6 -1.9 Transcriptional regulator, TetR family compare
PP_1344 -0.6 -0.6 conserved protein of unknown function compare
PP_3162 -0.6 -1.6 benzoate 1,2-dioxygenase subunit beta compare
PP_2976 -0.6 -0.9 putative transposase compare
PP_3036 -0.6 -2.3 conserved protein of unknown function compare
PP_0126 -0.6 -1.9 Cytochrome c4 compare
PP_4364 -0.6 -2.2 putative Anti-sigma F factor antagonist compare
PP_4690 -0.6 -2.2 Rieske 2Fe-2S family protein compare
PP_5558 -0.6 -1.1 putative transcriptional xre family of phage origin compare
PP_2060 -0.6 -1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0082 -0.6 -2.5 tryptophan synthase alpha chain compare
PP_4684 -0.6 -2.7 conserved protein of unknown function with kinase-like domain compare
PP_1211 -0.6 -2.3 conserved protein of unknown function compare
PP_1598 -0.6 -2.1 regulatory intramembrane protein RIP zinc protease compare
PP_1128 -0.6 -1.0 OmpA family protein compare
PP_4875 -0.6 -1.9 conserved membrane protein of unknown function compare
PP_1660 -0.6 -2.1 conserved protein of unknown function compare
PP_0439 -0.6 -2.0 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant control:fungal media Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms