Experiment set36IT069 for Pseudomonas putida KT2440

Compare to:

R2A with Vogels_fungal_media 0.2X

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +2.0 17.9 Sensor protein GacS compare
PP_4099 +2.0 17.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4373 +1.3 10.3 Transcriptional regulator FleQ compare
PP_3052 +1.3 2.6 conserved protein of unknown function compare
PP_5475 +1.1 2.4 conserved protein of unknown function compare
PP_4355 +1.1 2.1 flagellar export apparatus subunit compare
PP_4356 +1.0 2.6 Flagellar protein FliO compare
PP_1176 +1.0 1.9 conserved protein of unknown function compare
PP_2889 +1.0 5.2 putative Transmembrane regulator PrtR compare
PP_2737 +0.9 0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2306 +0.9 3.2 conserved exported protein of unknown function compare
PP_4528 +0.9 2.3 conserved protein of unknown function compare
PP_2899 +0.9 0.7 conserved exported protein of unknown function compare
PP_1774 +0.9 1.6 conserved exported protein of unknown function compare
PP_5495 +0.8 1.7 protein of unknown function compare
PP_1048 +0.8 2.0 putative protein secretion protein for export compare
PP_4391 +0.8 3.6 flagellar basal-body rod protein FlgB compare
PP_0653 +0.8 1.5 conserved protein of unknown function compare
PP_5654 +0.8 2.7 putative phosphotriesterase compare
PP_2046 +0.8 2.6 Transcriptional regulator, LysR family compare
PP_5580 +0.8 2.3 protein of unknown function compare
PP_5038 +0.8 2.5 conserved lipoprotein of unknown function compare
PP_2903 +0.8 1.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3398 +0.8 2.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2794 +0.8 1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4561 +0.8 1.0 stress response protein compare
PP_4386 +0.7 3.7 flagellar basal-body rod protein FlgF compare
PP_2773 +0.7 1.7 conserved protein of unknown function compare
PP_4136 +0.7 1.3 Transcriptional regulator, LuxR family compare
PP_0306 +0.7 2.0 conserved protein of unknown function compare
PP_2078 +0.7 2.2 transcriptional activator protein LysR compare
PP_0246 +0.7 1.3 two-component system DNA-binding response transcriptional dual regulator compare
PP_5324 +0.7 1.0 Response regulator compare
PP_4352 +0.7 4.9 flagellin export apparatus, substrate specificity protein compare
PP_1096 +0.7 1.2 putative electron transport complex protein compare
PP_1428 +0.7 2.2 Sigma factor AlgU negative regulatory protein compare
PP_5705 +0.7 1.1 protein of unknown function compare
PP_5471 +0.7 1.6 putative response regulator receiver protein compare
PP_2796 +0.7 2.9 conserved protein of unknown function compare
PP_4156 +0.7 1.7 Transcriptional regulator, LysR family compare
PP_3576 +0.7 1.9 putative Transmembrane sensor compare
PP_5274 +0.6 1.7 conserved protein of unknown function compare
PP_3738 +0.6 1.8 putative Transcriptional regulator VanR compare
PP_4389 +0.6 3.4 Flagellar basal-body rod modification protein FlgD compare
PP_0556 +0.6 1.7 Acetoin catabolism protein compare
PP_3392 +0.6 1.4 conserved protein of unknown function compare
PP_2765 +0.6 1.4 putative Sulfonate monooxygenase MsuD compare
PP_2864 +0.6 1.7 conserved protein of unknown function compare
PP_2907 +0.6 1.4 DNA-binding response regulator compare
PP_5313 +0.6 1.4 DNA-binding protein HU-alpha compare
PP_4384 +0.6 4.2 Flagellar L-ring protein compare
PP_2204 +0.6 3.0 copper resistance protein B compare
PP_5008 +0.6 1.4 Poly granule-associated protein compare
PP_4367 +0.6 2.9 Flagellar assembly protein FliH compare
PP_4616 +0.6 1.6 conserved protein of unknown function compare
PP_3799 +0.6 2.8 conserved exported protein of unknown function compare
PP_3460 +0.6 1.2 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4329 +0.6 2.4 FlhB domain protein compare
PP_3245 +0.6 0.8 conserved protein of unknown function compare
PP_5491 +0.6 1.3 conserved protein of unknown function with SEC-C motif domain compare
PP_2885 +0.6 3.1 putative Transporter compare
PP_1410 +0.6 0.9 conserved protein of unknown function compare
PP_4847 +0.6 1.8 chaperone modulatory of CbpA co-chaperone protein compare
PP_2232 +0.6 2.0 XRE family transcriptional regulator compare
PP_5157 +0.6 2.0 conserved exported protein of unknown function compare
PP_5714 +0.6 1.7 conserved protein of unknown function compare
PP_2499 +0.6 1.2 conserved protein of unknown function compare
PP_4837 +0.5 1.4 conserved protein of unknown function compare
PP_3344 +0.5 2.7 nickel ABC transporter permease subunit compare
PP_3307 +0.5 1.3 conserved protein of unknown function compare
PP_3884 +0.5 2.4 Phage holin, lambda family compare
PP_0512 +0.5 1.4 hypothetical protein compare
PP_3817 +0.5 1.5 Polyamine ABC transporter, ATP-binding protein compare
PP_4388 +0.5 4.1 Flagellar hook protein FlgE compare
PP_4171 +0.5 4.7 conserved exported protein of unknown function compare
PP_1554 +0.5 2.2 conserved protein of unknown function compare
PP_1512 +0.5 1.4 conserved protein of unknown function compare
PP_3375 +0.5 3.6 endonuclease I compare
PP_0432 +0.5 2.2 N-acetyl-gamma-glutamyl-phosphate reductase 1 compare
PP_2951 +0.5 2.8 Transcriptional regulator, TetR family compare
PP_5704 +0.5 2.6 conserved protein of unknown function compare
PP_1328 +0.5 1.8 Protein MraZ compare
PP_2747 +0.5 1.3 conserved protein of unknown function compare
PP_1578 +0.5 2.5 conserved protein of unknown function compare
PP_1576 +0.5 2.3 putative Immunity protein compare
PP_3233 +0.5 2.1 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_2539 +0.5 1.7 Transcriptional regulator, LysR family compare
PP_0905 +0.5 1.4 conserved exported protein of unknown function compare
PP_1054 +0.5 0.8 Type II secretion pathway protein XcpZ compare
PP_1621 +0.5 2.3 Protein-L-isoaspartate O-methyltransferase compare
PP_4743 +0.5 2.6 conserved protein of unknown function compare
PP_2235 +0.5 1.9 conserved protein of unknown function compare
PP_1903 +0.5 1.7 putative phosphotyrosine-protein phosphatase compare
PP_4385 +0.5 2.2 flagellar basal-body rod protein FlgG compare
PP_1153 +0.5 2.2 putative lipoprotein compare
PP_0593 +0.5 0.5 putative ribosome-binding factor compare
PP_4102 +0.5 1.5 conserved protein of unknown function compare
PP_1070 +0.5 2.3 glutamate / aspartate ABC transporter - permease subunit compare
PP_2387 +0.5 1.9 conserved protein of unknown function compare
PP_2031 +0.5 1.7 conserved protein of unknown function compare
PP_2513 +0.5 1.4 4-oxalomesaconate tautomerase compare
PP_0656 +0.5 2.1 putative Amino acid ABC transporter, permease protein compare
PP_4701 +0.5 0.7 glucose-6-phosphate isomerase compare
PP_0868 +0.5 1.9 ABC transporter ATP-binding subunit compare
PP_4660 +0.5 0.9 Transcriptional regulator, LysR family compare
PP_1381 +0.5 0.9 4-carboxymuconolactone decarboxylase compare
PP_1692 +0.5 1.2 conserved protein of unknown function compare
PP_1583 +0.5 2.4 putative Structural protein P5 compare
PP_5051 +0.5 1.6 conserved protein of unknown function compare
PP_3509 +0.5 1.7 Glyoxalase family protein compare
PP_1812 +0.5 0.8 conserved protein of unknown function compare
PP_3217 +0.5 2.6 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_4390 +0.5 2.4 flagellar basal-body rod protein FlgC compare
PP_4069 +0.5 1.9 conserved protein of unknown function compare
PP_1113 +0.5 2.6 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2163 +0.5 2.1 VacJ lipoprotein compare
PP_2530 +0.5 1.4 conserved protein of unknown function compare
PP_3484 +0.5 1.8 Response regulator receiver protein compare
PP_0973 +0.5 2.8 Nucleoid-associated protein PP_0973 compare
PP_2807 +0.5 2.2 conserved protein of unknown function compare
PP_4380 +0.5 3.8 Flagellar hook-associated protein FlgL compare
PP_1535 +0.5 1.7 putative Methyltransferase compare
PP_5241 +0.5 0.8 DNA-binding response regulator, LuxR family compare
PP_5499 +0.5 1.8 conserved protein of unknown function compare
PP_3374 +0.5 1.5 conserved protein of unknown function compare
PP_4196 +0.5 0.9 conserved exported protein of unknown function compare
PP_0035 +0.5 1.1 putative bactoprenol-linked glycose transferase compare
PP_4376 +0.5 3.5 flagellar filament capping protein compare
PP_2816 +0.5 1.0 putative Transcriptional regulator NfxB compare
PP_3892 +0.5 0.8 conserved protein of unknown function compare
PP_5298 +0.5 1.6 putative glutamine amidotransferase compare
PP_3434 +0.5 1.0 conserved protein of unknown function compare
PP_1235 +0.5 2.2 AhpC/TSA family protein compare
PP_2898 +0.5 0.8 conserved exported protein of unknown function compare
PP_2044 +0.5 1.1 conserved inner membrane protein of unknown function compare
PP_4396 +0.4 1.3 conserved protein of unknown function compare
PP_2828 +0.4 1.9 conserved protein of unknown function compare
PP_2643 +0.4 2.1 aromatic acid chemoreceptor compare
PP_5070 +0.4 2.4 ParA family protein compare
PP_0313 +0.4 0.8 putative electron transfer flavoprotein beta subunit compare
PP_5390 +0.4 1.3 conserved hypothetical protein compare
PP_0173 +0.4 2.3 putative transcriptional factor-related protein compare
PP_0276 +0.4 0.7 Transcriptional regulator, Cro/CI family compare
PP_4825 +0.4 2.5 Membrane protein, MarC family compare
PP_5698 +0.4 2.5 conserved exported protein of unknown function compare
PP_0080 +0.4 1.8 conserved protein of unknown function compare
PP_2842 +0.4 2.0 urease accessory protein compare
PP_3676 +0.4 2.3 conserved protein of unknown function compare
PP_3014 +0.4 1.3 conserved exported protein of unknown function compare
PP_1348 +0.4 2.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2847 +0.4 0.9 Urease accessory protein UreJ compare
PP_5557 +0.4 1.0 protein of unknown function compare
PP_5617 +0.4 1.4 conserved protein of unknown function compare
PP_2477 +0.4 2.0 isoquinoline 1-oxidoreductase subunit alpha compare
PP_0663 +0.4 1.3 Transcriptional regulator, AsnC family compare
PP_1111 +0.4 2.2 putative Synthetase compare
PP_2429 +0.4 0.8 putative Membrane protein compare
PP_0058 +0.4 3.1 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_4444 +0.4 1.3 transposase compare
PP_1269 +0.4 0.6 Universal stress protein family compare
PP_2715 +0.4 1.4 ArsH protein compare
PP_1677 +0.4 1.6 Adenosyl-cobyric acid synthase compare
PP_2105 +0.4 1.8 conserved protein of unknown function compare
PP_5658 +0.4 0.9 protein of unknown function compare
PP_4394 +0.4 1.6 flagella basal body P-ring formation protein compare
PP_2568 +0.4 0.7 Ring-cleaving dioxygenase compare
PP_0295 +0.4 2.1 choline / betaine / carnitine ABC transporter - membrane subunit compare
PP_1256 +0.4 1.8 putative alpha-ketoglutarate semialdehyde dehydrogenase compare
PP_3926 +0.4 0.9 short-chain dehydrogenase compare
PP_3654 +0.4 1.8 leucine-responsive regulatory protein compare
PP_4891 +0.4 1.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3000 +0.4 1.2 MaoC domain protein compare
PP_2054 +0.4 1.8 putative DNA-binding transcriptional regulator compare
PP_0797 +0.4 1.7 conserved protein of unknown function compare
PP_2061 +0.4 1.1 conserved protein of unknown function compare
PP_5533 +0.4 0.8 conserved protein of unknown function compare
PP_2990 +0.4 1.7 Transcriptional regulator, MerR family compare
PP_0202 +0.4 1.8 CBS domain-containing protein compare
PP_5682 +0.4 1.9 conserved protein of unknown function compare
PP_0901 +0.4 2.0 DNA-binding response regulator compare
PP_1087 +0.4 2.2 Outer membrane protein, OmpA family compare
PP_5059 +0.4 1.3 conserved exported protein of unknown function compare
PP_5448 +0.4 1.5 conserved protein of unknown function compare
PP_2147 +0.4 1.1 conserved exported protein of unknown function compare
PP_1550 +0.4 2.1 Transcriptional regulator, Cro/CI family compare
PP_4341 +0.4 2.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_1522 +0.4 2.0 major cold shock protein compare
PP_2693 +0.4 1.5 putative Dipeptidase compare
PP_1275 +0.4 1.7 conserved protein of unknown function compare
PP_5066 +0.4 1.2 K(+)/H(+) antiporter NhaP2 compare
PP_4622 +0.4 1.4 Hmg transcriptional repressor compare
PP_4506 +0.4 2.4 Nitroreductase family protein compare
PP_2748 +0.4 0.8 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_5385 +0.4 2.0 metal RND efflux outer membrane protein, CzcC family compare
PP_2099 +0.4 1.6 conserved protein of unknown function compare
PP_0042 +0.4 2.1 conserved exported protein of unknown function compare
PP_4845 +0.4 2.1 putative Urea ABC transporter, ATP-binding protein compare
PP_4366 +0.4 2.7 flagellum-specific ATP synthase compare
PP_0197 +0.4 1.1 conserved protein of unknown function compare
PP_4369 +0.4 2.1 Flagellar M-ring protein compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant control:fungal media Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms