Experiment set36IT067 for Pseudomonas putida KT2440

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PP_0846 -5.8 -2.8 DnaK-like molecular chaperone specific for IscU compare
PP_0691 -5.6 -3.9 Glutamate 5-kinase compare
PP_2402 -5.2 -3.6 putative Sensor histidine kinase compare
PP_0856 -5.2 -7.8 conserved lipoprotein of unknown function compare
PP_3365 -5.0 -1.4 Acetolactate synthase compare
PP_4700 -4.3 -6.3 pantothenate synthetase compare
PP_1654 -4.2 -2.9 cysteine synthase B compare
PP_0566 -4.1 -1.6 translation-related factor compare
PP_4799 -4.1 -2.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4693 -3.9 -6.9 RNA polymerase-binding transcription factor DksA compare
PP_4902 -3.6 -3.9 Oligoribonuclease compare
PP_4265 -3.2 -4.3 DNA-binding transcriptional dual regulator compare
PP_4895 -3.2 -5.7 tRNA dimethylallyltransferase compare
PP_2371 -3.2 -5.5 Sulphite reductase hemoprotein, beta subunit compare
PP_4724 -3.1 -2.1 Carbamoyl-phosphate synthase small chain compare
PP_1783 -3.1 -3.7 dTDP-glucose pyrophosphorylase compare
PP_4785 -2.9 -4.5 conserved exported protein of unknown function compare
PP_1734 -2.9 -5.5 Probable septum site-determining protein MinC compare
PP_4723 -2.8 -4.6 Carbamoyl-phosphate synthase large chain compare
PP_3999 -2.7 -6.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0719 -2.4 -2.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4129 -2.4 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0833 -2.3 -2.8 queuine tRNA-ribosyltransferase compare
PP_4560 -2.3 -5.6 putative Ribonuclease BN compare
PP_4008 -2.2 -5.9 ATP-dependent serine protease compare
PP_4997 -2.2 -1.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5706 -2.2 -1.6 Sec translocation complex - SecG subunit compare
PP_1217 -2.1 -4.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0834 -2.1 -2.3 Sec translocation complex subunit YajC compare
PP_0959 -2.0 -2.1 phospholipid ABC transporter compare
PP_1208 -2.0 -2.3 conserved protein of unknown function, SlyX family compare
PP_5571 -2.0 -1.5 conserved protein of unknown function compare
PP_3821 -1.9 -4.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1366 -1.8 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_1000 -1.8 -4.5 ornithine carbamoyltransferase, catabolic compare
PP_4120 -1.8 -3.0 NADH-quinone oxidoreductase subunit B compare
PP_2370 -1.8 -1.5 conserved protein of unknown function compare
PP_0855 -1.8 -3.1 conserved protein of unknown function compare
PP_3426 -1.7 -7.3 Multidrug efflux RND transporter MexF compare
PP_1001 -1.7 -2.5 arginine deiminase compare
PP_0999 -1.7 -2.7 carbamate kinase compare
PP_4755 -1.7 -10.9 Outer membrane ferrichrome-iron receptor compare
PP_1898 -1.7 -2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_1353 -1.7 -2.5 conserved membrane protein of unknown function compare
PP_1719 -1.7 -5.5 Tail-specific protease prc compare
PP_4058 -1.7 -7.8 1,4-alpha-glucan branching enzyme compare
PP_4131 -1.7 -4.8 NADH-quinone oxidoreductase subunit N compare
PP_4999 -1.7 -1.6 dihydroorotase-like protein compare
PP_5393 -1.6 -1.1 putative metal-binding chaperone compare
PP_4993 -1.6 -3.8 Glutathione synthetase compare
PP_4561 -1.6 -0.9 stress response protein compare
PP_1994 -1.6 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_4126 -1.6 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_1041 -1.5 -2.1 twin arginine protein export complex subunit compare
PP_5114 -1.5 -2.0 putative adenine methyltransferase compare
PP_1198 -1.5 -1.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1935 -1.5 -2.2 Transcriptional regulator, Cro/CI family compare
PP_0339 -1.5 -4.6 Pyruvate dehydrogenase E1 component compare
PP_0998 -1.5 -4.5 conserved protein of unknown function compare
PP_1598 -1.5 -3.4 regulatory intramembrane protein RIP zinc protease compare
PP_4342 -1.5 -2.7 flagellar synthesis regulator, putative ATPase compare
PP_4004 -1.5 -5.8 DNA translocase FtsK compare
PP_2044 -1.5 -1.7 conserved inner membrane protein of unknown function compare
PP_1664 -1.4 -2.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_2433 -1.4 -0.9 conserved protein of unknown function compare
PP_0406 -1.4 -1.8 Nucleotidyltransferase family protein compare
PP_1002 -1.4 -3.8 arginine/ornithine antiporter compare
PP_5216 -1.4 -1.9 exopolyphosphatase compare
PP_4824 -1.4 -4.4 Sensor histidine kinase/response regulator compare
PP_5225 -1.4 -1.4 frataxin compare
PP_4880 -1.4 -6.5 exoribonuclease R compare
PP_1008 -1.4 -1.6 RNA polymerase subunit sigma-24 compare
PP_1344 -1.3 -1.2 conserved protein of unknown function compare
PP_0001 -1.3 -1.4 probable chromosome-partitioning protein compare
PP_0393 -1.3 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3312 -1.3 -1.3 putative Heat shock protein compare
PP_4964 -1.3 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_4593 -1.3 -1.6 conserved protein of unknown function compare
PP_4471 -1.3 -3.9 Magnesium transporter compare
PP_1022 -1.3 -4.0 glucose 6-phosphate-1-dehydrogenase compare
PP_2214 -1.3 -3.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1381 -1.3 -1.2 4-carboxymuconolactone decarboxylase compare
PP_4937 -1.3 -3.0 toluene tolerance protein compare
PP_1733 -1.2 -2.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_2328 -1.2 -2.4 Phosphoadenosine phosphosulfate reductase compare
PP_4546 -1.2 -2.8 ATP-dependent helicase HrpA compare
PP_2215 -1.2 -3.7 acetyl-CoA acetyltransferase compare
PP_5327 -1.2 -2.6 putative phosphate ABC transporter, permease subunit compare
PP_1216 -1.2 -3.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1764 -1.2 -2.8 Phosphoglycolate phosphatase 2 compare
PP_0704 -1.2 -2.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3903 -1.1 -1.5 conserved protein of unknown function compare
PP_t11 -1.1 -2.4 tRNA-Lys compare
PP_2826 -1.1 -1.8 Transcriptional regulator MexT compare
PP_1999 -1.1 -1.2 membrane protein required for colicin V production compare
PP_5027 -1.1 -2.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0425 -1.1 -3.0 conserved protein of unknown function compare
PP_0164 -1.1 -3.0 conserved protein of unknown function compare
PP_2646 -1.1 -2.7 conserved protein of unknown function compare
PP_2210 -1.1 -2.3 LysR family transcriptional regulator compare
PP_2681 -1.1 -1.3 coenzyme PQQ synthesis protein D compare
PP_4961 -1.0 -1.8 putative Lipoprotein compare
PP_5329 -1.0 -2.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4121 -1.0 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PP_2160 -1.0 -2.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1187 -1.0 -3.9 sensor protein compare
PP_4891 -1.0 -2.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3762 -1.0 -1.9 Response regulator compare
PP_3425 -1.0 -3.1 Efflux transporter RND family, MFP subunit compare
PP_4829 -1.0 -2.9 putative precorrin-3B synthase compare
PP_1128 -1.0 -1.6 OmpA family protein compare
PP_3637 -1.0 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1691 -1.0 -1.7 conserved protein of unknown function compare
PP_1679 -1.0 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3034 -1.0 -1.8 putative Regulator protein compare
PP_t29 -1.0 -1.7 tRNA-Ala compare
PP_1224 -1.0 -2.4 periplasmic subunit of the TolQRA transport system compare
PP_1380 -0.9 -3.7 3-oxoadipate enol-lactonase 2 compare
PP_4874 -0.9 -1.2 50S ribosomal protein L9 compare
PP_5025 -0.9 -4.4 Glucans biosynthesis glucosyltransferase H compare
PP_1829 -0.9 -1.7 Hydrolase, alpha/beta fold family compare
PP_5328 -0.9 -1.6 putative phosphate transport system permease protein compare
PP_1895 -0.9 -2.3 putative ABC transporter - ATP binding subunit compare
PP_2067 -0.9 -1.6 putative EmrB/QacA family drug resistance transporter compare
PP_4701 -0.9 -0.7 glucose-6-phosphate isomerase compare
PP_2680 -0.9 -1.6 aldehyde dehydrogenase compare
PP_3018 -0.9 -2.7 conserved protein of unknown function compare
PP_1678 -0.9 -2.3 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5500 -0.9 -1.2 protein of unknown function compare
PP_5310 -0.9 -3.8 junction-specific ATP-dependent DNA helicase compare
PP_4696 -0.9 -2.6 Nitrogen regulation protein NR(I) compare
PP_2302 -0.9 -2.3 DNA-binding, ATP-dependent protease compare
PP_2497 -0.9 -1.4 conserved protein of unknown function compare
PP_1262 -0.9 -4.0 LysR family transcriptional regulator compare
PP_0290 -0.9 -3.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1215 -0.9 -1.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_5658 -0.9 -1.6 protein of unknown function compare
PP_1322 -0.9 -1.2 putative Lipoprotein compare
PP_4254 -0.9 -1.4 conserved protein of unknown function compare
PP_1454 -0.9 -1.8 conserved protein of unknown function compare
PP_1201 -0.9 -2.6 conserved exported protein of unknown function compare
PP_1513 -0.9 -1.8 Ribosomal RNA small subunit methyltransferase J compare
PP_2107 -0.9 -1.3 conserved protein of unknown function compare
PP_4124 -0.9 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_2510 -0.9 -1.3 conserved protein of unknown function compare
PP_1186 -0.9 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_0293 -0.9 -0.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4418 -0.9 -2.7 conserved protein of unknown function compare
PP_0117 -0.8 -2.1 Zn(2+) ABC transporter - permease subunit compare
PP_0345 -0.8 -2.3 putative Heptose kinase WapP compare
PP_0119 -0.8 -1.2 putative zinc uptake regulation protein ZUR compare
PP_2144 -0.8 -1.8 Transcriptional regulator, TetR family compare
PP_4343 -0.8 -1.9 Flagellar biosynthesis protein FlhF compare
PP_2824 -0.8 -2.5 Transcriptional regulator, TetR family compare
PP_4130 -0.8 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1304 -0.8 -3.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0760 -0.8 -0.9 conserved membrane protein of unknown function compare
PP_5508 -0.8 -0.9 conserved protein of unknown function compare
PP_5156 -0.8 -1.8 conserved exported protein of unknown function compare
PP_0352 -0.8 -1.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1202 -0.8 -5.5 putative enzyme involved in modification of phospholipids conserved
PP_3043 -0.8 -1.1 conserved protein of unknown function compare
PP_4162 -0.8 -2.4 conserved membrane protein of unknown function compare
PP_1232 -0.8 -3.2 conserved exported protein of unknown function compare
PP_4952 -0.8 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4009 -0.8 -2.4 ATP-dependent Clp protease adapter protein ClpS compare
PP_4942 -0.8 -1.6 conserved protein of unknown function compare
PP_0003 -0.8 -1.2 16S RNA methyltransferase compare
PP_3766 -0.8 -2.0 Lactoylglutathione lyase compare
PP_4994 -0.8 -1.7 conserved protein of unknown function compare
PP_1460 -0.8 -3.8 putative Membrane protein compare
PP_0772 -0.8 -2.3 Metallo-beta-lactamase family protein compare
PP_1428 -0.8 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_0484 -0.8 -2.5 transporter of an unknown substrate compare
PP_2355 -0.8 -2.0 Response regulator receiver protein compare
PP_5198 -0.8 -1.7 conserved protein of unknown function compare
PP_2672 -0.7 -2.2 Transcriptional activator protein ExaE compare
PP_1824 -0.7 -0.8 Smr domain protein compare
PP_1896 -0.7 -3.5 putative ABC transporter - permease subunit compare
PP_2750 -0.7 -2.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_0888 -0.7 -1.2 Photosynthetic apparatus regulatory protein RegA compare
PP_3946 -0.7 -1.0 HTH-type transcriptional repressor NicR compare
PP_4848 -0.7 -1.9 Curved DNA-binding protein compare
PP_2472 -0.7 -1.5 putative transcriptional regulator, MerR family compare
PP_0150 -0.7 -1.2 conserved exported protein of unknown function compare
PP_2148 -0.7 -3.9 transcription-repair coupling factor compare
PP_4260 -0.7 -2.7 conserved protein of unknown function compare
PP_3204 -0.7 -1.3 conserved protein of unknown function compare
PP_1892 -0.7 -0.9 conserved protein of unknown function compare
PP_3971 -0.7 -0.5 conserved protein of unknown function compare
PP_1238 -0.7 -2.4 putative Lipoprotein compare
PP_1349 -0.7 -2.9 ATP:cob(I)alamin adenosyltransferase compare
PP_2118 -0.7 -1.8 conserved protein of unknown function compare
PP_5451 -0.7 -1.5 protein of unknown function compare
PP_1264 -0.7 -3.4 putative Fusaric acid resistance protein compare
PP_4166 -0.7 -1.7 conserved protein of unknown function compare
PP_5604 -0.7 -1.0 putative subtilisin-like serine protease compare
PP_4697 -0.7 -1.6 poly(A) polymerase compare
PP_2610 -0.7 -2.0 conserved protein of unknown function compare
PP_1938 -0.7 -0.9 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms