Experiment set35S704 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_18600 -5.8 -2.6 isopropylmalate isomerase compare
PS417_18595 -5.1 -3.6 3-isopropylmalate dehydratase compare
PS417_18585 -4.9 -3.4 3-isopropylmalate dehydrogenase compare
PS417_23805 -4.6 -4.7 acetolactate synthase 3 regulatory subunit compare
PS417_16005 -4.2 -3.5 ATPase compare
PS417_26740 -4.0 -8.0 homoserine acetyltransferase compare
PS417_23800 -3.9 -11.0 ketol-acid reductoisomerase compare
PS417_26745 -3.7 -6.1 methionine biosynthesis protein MetW compare
PS417_23810 -3.6 -8.7 acetolactate synthase 3 catalytic subunit compare
PS417_02975 -3.5 -1.9 3-dehydroquinate dehydratase compare
PS417_01855 -3.5 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_27040 -3.3 -1.3 3-phosphoglycerate dehydrogenase compare
PS417_03310 -3.1 -7.8 carbonate dehydratase compare
PS417_02415 -3.0 -4.5 phosphoserine phosphatase compare
PS417_02510 -3.0 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_05595 -2.9 -6.5 ornithine carbamoyltransferase compare
PS417_01580 -2.9 -1.0 imidazole glycerol phosphate synthase compare
PS417_25725 -2.9 -13.0 anthranilate synthase component I compare
PS417_25715 -2.9 -4.7 anthranilate phosphoribosyltransferase compare
PS417_08540 -2.8 -1.4 RNA helicase compare
PS417_26890 -2.6 -4.9 dihydroxy-acid dehydratase compare
PS417_24505 -2.6 -12.3 membrane protein compare
PS417_26985 -2.6 -4.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23545 -2.6 -1.3 gamma-glutamyl kinase compare
PS417_18560 -2.5 -4.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23375 -2.4 -1.0 cytochrome C oxidase compare
PS417_04420 -2.4 -8.2 histidinol dehydrogenase compare
PS417_22445 -2.4 -1.4 ATP-dependent DNA helicase RuvB compare
PS417_08155 -2.4 -1.0 integration host factor subunit beta compare
PS417_24710 -2.3 -3.4 lipoprotein compare
PS417_21480 -2.3 -1.0 23S rRNA pseudouridylate synthase compare
PS417_24745 -2.3 -1.2 gamma-glutamyl phosphate reductase compare
PS417_00385 -2.3 -0.8 Fur family transcriptional regulator compare
PS417_23110 -2.3 -7.1 2-isopropylmalate synthase compare
PS417_12375 -2.3 -2.1 serine/threonine protein phosphatase compare
PS417_24935 -2.2 -0.8 hypothetical protein compare
PS417_04415 -2.2 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_08025 -2.2 -1.4 acetylornithine aminotransferase compare
PS417_26695 -2.2 -0.7 uracil phosphoribosyltransferase compare
PS417_01850 -2.2 -1.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01575 -2.1 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27435 -2.1 -5.1 polyphosphate kinase compare
PS417_25645 -2.1 -3.7 peptidase M23 compare
PS417_01560 -2.0 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_11485 -2.0 -1.7 AraC family transcriptional regulator compare
PS417_25720 -2.0 -2.9 anthranilate synthase component II compare
PS417_07560 -2.0 -1.2 universal stress protein UspA compare
PS417_23775 -2.0 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_20130 -2.0 -9.8 dehydrogenase compare
PS417_25790 -2.0 -1.9 aminoglycoside phosphotransferase compare
PS417_01710 -1.9 -4.2 histidine utilization repressor compare
PS417_06685 -1.9 -0.7 beta-ketoadipyl CoA thiolase compare
PS417_27595 -1.9 -2.3 recombinase XerC compare
PS417_02740 -1.9 -1.9 LysR family transcriptional regulator compare
PS417_18530 -1.9 -2.8 O-succinylhomoserine sulfhydrylase compare
PS417_00510 -1.9 -0.9 membrane protein compare
PS417_17035 -1.9 -1.0 Cro/Cl family transcriptional regulator compare
PS417_27870 -1.8 -2.0 ATP-dependent DNA helicase RecG compare
PS417_12855 -1.8 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_16990 -1.8 -2.4 acyl-CoA dehydrogenase compare
PS417_01565 -1.8 -2.9 imidazole glycerol phosphate synthase compare
PS417_27795 -1.8 -0.4 orotate phosphoribosyltransferase compare
PS417_05830 -1.8 -1.8 hypothetical protein compare
PS417_02270 -1.8 -2.8 carbamoyltransferase compare
PS417_25650 -1.7 -1.7 anhydro-N-acetylmuramic acid kinase compare
PS417_02280 -1.7 -1.0 GlcNAc-PI de-N-acetylase compare
PS417_24370 -1.7 -0.7 (2Fe-2S)-binding protein compare
PS417_26605 -1.7 -0.8 malonate decarboxylase subunit beta compare
PS417_28050 -1.7 -3.4 hypothetical protein compare
PS417_04170 -1.7 -3.8 stringent starvation protein A compare
PS417_05865 -1.7 -1.6 hypothetical protein compare
PS417_13710 -1.7 -2.5 hypothetical protein compare
PS417_00960 -1.7 -1.8 transcriptional regulator compare
PS417_06645 -1.6 -8.1 RNA polymerase-associated protein RapA compare
PS417_23915 -1.6 -2.9 pantoate--beta-alanine ligase compare
PS417_26685 -1.6 -1.7 hypothetical protein compare
PS417_04080 -1.6 -2.1 peptide ABC transporter substrate-binding protein compare
PS417_00705 -1.5 -1.3 MarR family transcriptional regulator compare
PS417_08825 -1.5 -2.7 TetR family transcriptional regulator compare
PS417_04060 -1.5 -3.5 dipeptide ABC transporter, permease component (from data) compare
PS417_06540 -1.5 -1.2 membrane protein compare
PS417_22565 -1.5 -0.4 formyltetrahydrofolate deformylase compare
PS417_04340 -1.5 -3.7 ribosome hibernation promoting factor HPF compare
PS417_05100 -1.5 -1.1 RNA polymerase sigma factor compare
PS417_13885 -1.5 -1.8 chemotaxis protein CheY compare
PS417_18435 -1.5 -1.6 hypothetical protein compare
PS417_09420 -1.5 -1.5 LysR family transcriptional regulator compare
PS417_10145 -1.5 -1.8 hypothetical protein compare
PS417_17565 -1.5 -2.5 branched-chain amino acid aminotransferase compare
PS417_27535 -1.4 -4.3 chemotaxis protein CheY compare
PS417_06745 -1.4 -1.6 polysaccharide deacetylase compare
PS417_26530 -1.4 -0.9 hypothetical protein compare
PS417_27005 -1.4 -0.6 membrane protein compare
PS417_04270 -1.4 -5.5 ribonuclease G compare
PS417_17490 -1.4 -1.5 ABC transporter ATP-binding protein compare
PS417_23390 -1.4 -6.0 ubiquinol oxidase subunit II compare
PS417_24135 -1.4 -1.4 hypothetical protein compare
PS417_02950 -1.4 -2.0 tRNA-dihydrouridine synthase B compare
PS417_10405 -1.4 -0.8 filamentous hemagglutinin compare
PS417_24100 -1.4 -4.8 transcriptional regulator PdhR compare
PS417_17805 -1.4 -1.6 microcin B17 processing protein McbC compare
PS417_28275 -1.4 -2.2 cobalamin biosynthesis protein CobW compare
PS417_15975 -1.4 -1.1 glutamate carboxypeptidase compare
PS417_18390 -1.4 -4.8 LacI family transcriptional regulator compare
PS417_23900 -1.4 -5.4 poly(A) polymerase compare
PS417_04595 -1.4 -0.9 cell division protein MraZ compare
PS417_27865 -1.4 -1.4 LysR family transcriptional regulator compare
PS417_04365 -1.4 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04195 -1.4 -3.9 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
PS417_25710 -1.3 -0.8 indole-3-glycerol-phosphate synthase compare
PS417_11945 -1.3 -2.1 hypothetical protein compare
PS417_24500 -1.3 -1.8 DEAD/DEAH box helicase compare
PS417_23150 -1.3 -1.7 Cro/Cl family transcriptional regulator compare
PS417_06700 -1.3 -2.1 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) compare
PS417_08365 -1.3 -0.7 hypothetical protein compare
PS417_21705 -1.3 -2.8 arginine N-succinyltransferase compare
PS417_27135 -1.3 -0.3 glutamine synthetase compare
PS417_00650 -1.3 -0.5 LysR family transcriptional regulator compare
PS417_28295 -1.3 -2.2 glutamine synthetase compare
PS417_26805 -1.3 -0.7 cell division protein FtsE compare
PS417_00285 -1.3 -4.3 carbonate dehydratase compare
PS417_07165 -1.3 -2.3 dihydrodipicolinate synthase compare
PS417_02720 -1.3 -0.6 TetR family transcriptional regulator compare
PS417_24600 -1.3 -3.1 hydrogenase compare
PS417_00375 -1.3 -2.0 membrane protein compare
PS417_17610 -1.3 -1.2 AsnC family transcriptional regulator compare
PS417_01095 -1.3 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_06600 -1.3 -0.5 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_23405 -1.3 -2.3 transcriptional regulator compare
PS417_21780 -1.2 -1.9 argininosuccinate lyase compare
PS417_11120 -1.2 -3.2 UDP pyrophosphate phosphatase compare
PS417_16490 -1.2 -0.6 cell division protein FtsK compare
PS417_02765 -1.2 -1.0 phosphate starvation-inducible protein PsiF compare
PS417_24605 -1.2 -2.2 thiamine-phosphate pyrophosphorylase compare
PS417_28070 -1.2 -3.1 phosphate ABC transporter ATP-binding protein compare
PS417_09470 -1.2 -0.5 hypothetical protein compare
PS417_16515 -1.2 -1.8 Clp protease ClpS compare
PS417_09930 -1.2 -1.1 hypothetical protein compare
PS417_16475 -1.2 -1.3 camphor resistance protein CrcB compare
PS417_07140 -1.2 -0.7 peptidase M48 compare
PS417_23370 -1.2 -2.7 protoheme IX farnesyltransferase compare
PS417_03515 -1.2 -1.0 type III secretion protein compare
PS417_19675 -1.2 -2.3 chemotaxis protein CheY compare
PS417_15915 -1.2 -0.9 hypothetical protein compare
PS417_08170 -1.2 -3.9 capsular biosynthesis protein compare
PS417_26995 -1.2 -4.8 phosphoserine phosphatase compare
PS417_07540 -1.2 -2.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_03875 -1.2 -1.4 membrane protein compare
PS417_01570 -1.2 -1.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_28075 -1.2 -3.3 phosphate ABC transporter permease compare
PS417_14165 -1.2 -2.2 ArsR family transcriptional regulator compare
PS417_23385 -1.2 -4.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_14260 -1.2 -2.1 phosphate ABC transporter permease compare
PS417_07170 -1.2 -1.3 hypothetical protein compare
PS417_21730 -1.2 -3.3 peptidase M14 compare
PS417_24765 -1.2 -2.2 membrane protein compare
PS417_08245 -1.1 -0.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_03560 -1.1 -0.6 GTP-binding protein compare
PS417_00315 -1.1 -2.4 MFS transporter compare
PS417_03730 -1.1 -2.6 phosphate acetyltransferase compare
PS417_11360 -1.1 -1.4 energy transducer TonB compare
PS417_12220 -1.1 -2.3 hydroxyacylglutathione hydrolase compare
PS417_15400 -1.1 -1.2 hypothetical protein compare
PS417_28450 -1.1 -1.9 XRE family transcriptional regulator compare
PS417_26775 -1.1 -2.5 thiazole synthase compare
PS417_04920 -1.1 -3.0 GntR family transcriptional regulator compare
PS417_15325 -1.1 -0.7 type VI secretion protein compare
PS417_07700 -1.1 -1.4 chromosome partitioning protein ParA compare
PS417_03260 -1.1 -0.4 5S ribosomal RNA compare
PS417_16510 -1.1 -2.1 Clp protease ClpX compare
PS417_06095 -1.1 -1.0 energy transducer TonB compare
PS417_16570 -1.1 -5.6 isocitrate lyase compare
PS417_05040 -1.1 -2.1 amino acid dehydrogenase compare
PS417_28510 -1.1 -3.6 chromosome partitioning protein compare
PS417_14980 -1.1 -0.5 universal stress protein UspA compare
PS417_26660 -1.1 -1.9 protein PilI compare
PS417_03045 -1.1 -1.0 hypothetical protein compare
PS417_19350 -1.1 -1.9 GTP cyclohydrolase compare
PS417_12870 -1.1 -1.1 enoyl-CoA hydratase compare
PS417_06335 -1.1 -1.5 S-formylglutathione hydrolase compare
PS417_05445 -1.1 -0.8 DNA mismatch repair protein MutT compare
PS417_27835 -1.1 -2.2 endoribonuclease compare
PS417_21125 -1.1 -5.1 phosphoadenosine phosphosulfate reductase compare
PS417_10060 -1.1 -1.2 hypothetical protein compare
PS417_11585 -1.1 -1.4 LuxR family transcriptional regulator compare
PS417_18425 -1.1 -0.9 sporulation protein compare
PS417_24705 -1.0 -0.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_26175 -1.0 -0.5 sarcosine oxidase subunit gamma compare
PS417_22690 -1.0 -1.8 phosphogluconate dehydratase compare
PS417_04050 -1.0 -1.0 peptide ABC transporter ATP-binding protein compare
PS417_26010 -1.0 -3.1 amidophosphoribosyltransferase compare
PS417_26755 -1.0 -1.1 nucleoside-triphosphate diphosphatase compare
PS417_12755 -1.0 -1.4 RND transporter compare
PS417_22210 -1.0 -1.2 AraC family transcriptional regulator compare
PS417_02000 -1.0 -5.7 glutamate synthase compare
PS417_09010 -1.0 -1.3 phosphohistidine phosphatase compare
PS417_10615 -1.0 -2.7 hypothetical protein compare
PS417_05755 -1.0 -4.0 tail protein compare
PS417_13510 -1.0 -0.5 polyketide cyclase compare
PS417_21420 -1.0 -6.2 aminodeoxychorismate lyase compare


Specific Phenotypes

For 7 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms