Experiment set35IT071 for Pseudomonas putida KT2440

Compare to:

PUT8 MOI 0.1

200 most important genes:

  gene name fitness t score description  
PP_3627 -8.8 -6.1 conserved protein of unknown function compare
PP_0789 -7.7 -5.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1627 -7.6 -5.2 conserved protein of unknown function compare
PP_0434 -7.3 -7.1 Anhydro-N-acetylmuramic acid kinase compare
PP_0540 -7.1 -9.7 conserved inner membrane protein compare
PP_0405 -7.1 -10.8 conserved protein of unknown function compare
PP_1355 -6.9 -12.4 Muropeptide permease AmpG compare
PP_1774 -6.9 -3.0 conserved exported protein of unknown function compare
PP_5114 -6.8 -3.9 putative adenine methyltransferase compare
PP_4099 -6.6 -15.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2145 -6.6 -4.6 beta-N-acetylglucosaminidase compare
PP_1650 -6.5 -13.2 Sensor protein GacS compare
PP_2148 -6.4 -12.3 transcription-repair coupling factor compare
PP_5217 -6.3 -13.1 Polyphosphate kinase compare
PP_1800 -6.2 -6.0 Oxidoreductase Rmd compare
PP_1075 -6.0 -14.5 glycerol kinase compare
PP_1804 -5.9 -4.1 Glycosyl transferase WbpL compare
PP_1663 -5.8 -7.9 conserved exported protein of unknown function compare
PP_3241 -5.7 -1.5 conserved exported protein of unknown function compare
PP_1803 -5.6 -13.6 UDP-sugar epimerase compare
PP_1655 -5.5 -7.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4936 -5.4 -9.1 O-antigen polymerase compare
PP_1764 -5.4 -3.7 Phosphoglycolate phosphatase 2 compare
PP_1776 -5.4 -13.4 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2029 -5.2 -4.2 von Willebrand factor type A domain protein compare
PP_0406 -5.2 -5.7 Nucleotidyltransferase family protein compare
PP_1076 -5.1 -8.5 aquaglyceroporin compare
PP_4952 -5.1 -1.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1805 -5.1 -18.5 Polysaccharide biosynthesis protein compare
PP_4938 -5.1 -12.2 putative Glycosyl transferase compare
PP_1801 -5.0 -11.7 Glycosyl transferase WbpY compare
PP_1780 -5.0 -16.4 putative mannosyltransferase compare
PP_4944 -5.0 -3.4 Carbamoyltransferase compare
PP_4874 -4.9 -2.5 50S ribosomal protein L9 compare
PP_1777 -4.8 -17.5 phosphomannomutase compare
PP_1778 -4.7 -3.3 Lipopolysaccharide ABC export system, permease protein compare
PP_1799 -4.7 -12.5 GDP-mannose 4,6-dehydratase compare
PP_1802 -4.6 -18.9 glycosyl transferase compare
PP_0164 -4.6 -7.0 conserved protein of unknown function compare
PP_1824 -4.5 -1.6 Smr domain protein compare
PP_4902 -4.4 -3.0 Oligoribonuclease compare
PP_1789 -4.3 -4.3 Hydrolase, haloacid dehalogenase-like family compare
PP_0435 -4.3 -9.2 Peptidase, M23/M37 family compare
PP_5279 -4.3 -6.0 conserved protein of unknown function compare
PP_1204 -4.3 -7.5 putative Lipoprotein compare
PP_1779 -4.2 -5.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5283 -4.0 -7.6 periplasmic dipeptide transport protein compare
PP_2032 -3.9 -6.0 putative ATPase compare
PP_0066 -3.8 -5.6 Ribosomal RNA small subunit methyltransferase B compare
PP_5145 -3.7 -15.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2031 -3.7 -2.0 conserved protein of unknown function compare
PP_4009 -3.6 -4.0 ATP-dependent Clp protease adapter protein ClpS compare
PP_4726 -3.4 -3.3 Chaperone protein DnaJ compare
PP_5146 -3.1 -5.8 RNA pyrophosphohydrolase compare
PP_1523 -3.1 -3.0 conserved protein of unknown function compare
PP_2030 -3.1 -3.9 conserved protein of unknown function compare
PP_1493 -3.0 -3.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1654 -3.0 -2.1 cysteine synthase B compare
PP_1176 -3.0 -2.5 conserved protein of unknown function compare
PP_5058 -3.0 -5.3 Carboxy-terminal-processing protease compare
PP_1326 -2.9 -1.9 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2402 -2.9 -3.1 putative Sensor histidine kinase compare
PP_2027 -2.9 -4.6 conserved exported protein of unknown function compare
PP_1871 -2.9 -4.0 Protease HtpX compare
PP_1798 -2.9 -8.1 Outer membrane efflux protein compare
PP_4268 -2.9 -1.4 nucleoid-associated broad specificity regulator compare
PP_1036 -2.8 -6.7 membrane-bound lytic murein transglycosylase F compare
PP_0872 -2.8 -7.9 Peptide chain release factor 3 compare
PP_1770 -2.8 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0725 -2.8 -4.9 conserved hypothetical TPR repeat protein compare
PP_0719 -2.7 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0794 -2.7 -3.4 1-phosphofructokinase monomer compare
PP_0937 -2.7 -4.4 endoribonuclease G (RNAse G) compare
PP_4171 -2.6 -9.8 conserved exported protein of unknown function compare
PP_t49 -2.6 -4.1 tRNA-Met compare
PP_4895 -2.6 -1.8 tRNA dimethylallyltransferase compare
PP_2903 -2.6 -1.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5571 -2.5 -1.1 conserved protein of unknown function compare
PP_4264 -2.5 -5.5 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_0035 -2.5 -2.0 putative bactoprenol-linked glycose transferase compare
PP_1918 -2.4 -7.8 septation protein compare
PP_1186 -2.4 -1.8 two component system DNA-binding transcriptional dual regulator compare
PP_0959 -2.4 -1.9 phospholipid ABC transporter compare
PP_1807 -2.4 -6.9 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_5706 -2.3 -2.3 Sec translocation complex - SecG subunit compare
PP_0293 -2.3 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2794 -2.2 -1.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1783 -2.2 -1.5 dTDP-glucose pyrophosphorylase compare
PP_0691 -2.2 -2.7 Glutamate 5-kinase compare
PP_1045 -2.2 -1.7 Type II secretion pathway protein XcpP compare
PP_4645 -2.2 -2.4 Large-conductance mechanosensitive channel compare
PP_2163 -2.1 -4.2 VacJ lipoprotein compare
PP_5270 -2.1 -3.3 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_0048 -2.0 -1.7 conserved protein of unknown function compare
PP_4517 -1.9 -1.4 conserved protein of unknown function compare
PP_1790 -1.9 -2.1 putative Acylneuraminate cytidylyltransferase compare
PP_3726 -1.9 -1.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_4515 -1.9 -3.7 Transcriptional regulator, MarR family compare
PP_2028 -1.9 -3.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5101 -1.8 -4.5 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_3239 -1.8 -1.6 putative cointegrate resolution protein T Tn4652 compare
PP_1898 -1.8 -1.6 MotA/TolQ/ExbB proton channel family protein compare
PP_5507 -1.8 -2.8 protein of unknown function compare
PP_5039 -1.8 -1.3 conserved protein of unknown function compare
PP_4006 -1.8 -4.0 Putative arginyl-tRNA--protein transferase compare
PP_3999 -1.8 -4.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0962 -1.7 -2.2 toluene-tolerance protein compare
PP_5329 -1.7 -3.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0958 -1.7 -3.5 phospholipid ABC transporter ATP-binding subunit compare
PP_2371 -1.7 -3.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1797 -1.7 -3.7 HlyD family secretion protein compare
PP_0787 -1.7 -2.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4813 -1.7 -5.9 PAP2 family protein/DedA family protein compare
PP_0855 -1.6 -2.4 conserved protein of unknown function compare
PP_4804 -1.6 -1.1 RlpA-like lipoprotein compare
PP_2575 -1.6 -2.0 conserved exported protein of unknown function compare
PP_1763 -1.6 -2.5 putative oxidoreductase compare
PP_1218 -1.5 -2.3 putative acyl-CoA thioesterase compare
PP_1702 -1.5 -2.8 Recombination-associated protein RdgC compare
PP_1215 -1.5 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_0960 -1.5 -3.3 phospholipid ABC transporter binding protein compare
PP_1626 -1.5 -4.5 DNA mismatch repair protein MutS compare
PP_3766 -1.5 -1.8 Lactoylglutathione lyase compare
PP_1428 -1.4 -1.7 Sigma factor AlgU negative regulatory protein compare
PP_2005 -1.4 -3.0 conserved exported protein of unknown function compare
PP_4897 -1.4 -2.6 N-acetylmuramoyl-L-alanine amidase compare
PP_2299 -1.4 -1.6 Trigger factor compare
PP_4971 -1.4 -6.3 putative Outer membrane-bound lytic murein transglycolase A compare
PP_1629 -1.4 -3.2 Protein RecA compare
PP_4217 -1.4 -9.8 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2253 -1.4 -1.2 Transcriptional regulator, GntR family compare
PP_1656 -1.4 -4.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_2087 -1.4 -1.8 CmpX protein compare
PP_2615 -1.4 -1.4 hemolysin-coregulated protein compare
PP_0007 -1.4 -3.2 conserved hypothetical protein compare
PP_4570 -1.4 -6.7 conserved protein of unknown function compare
PP_5504 -1.4 -2.5 conserved protein of unknown function compare
PP_0401 -1.4 -2.3 Ribosomal RNA small subunit methyltransferase A compare
PP_0839 -1.3 -2.0 tRNA Cm32/Um32 methyltransferase compare
PP_4569 -1.3 -2.0 conserved protein of unknown function compare
PP_5429 -1.3 -2.8 protein of unknown function compare
PP_4054 -1.3 -1.8 conserved protein of unknown function compare
PP_4875 -1.3 -1.6 conserved membrane protein of unknown function compare
PP_4805 -1.3 -3.6 membrane-bound lytic murein transglycosylase B compare
PP_4720 -1.3 -0.7 putative RNA binding protein compare
PP_4798 -1.3 -3.7 putative Membrane-bound lytic murein transglycosylase compare
PP_4098 -1.3 -1.7 UvrABC system protein C compare
PP_5533 -1.3 -1.2 conserved protein of unknown function compare
PP_0566 -1.3 -1.0 translation-related factor compare
PP_0941 -1.2 -2.5 putative ribosome associated protein compare
PP_2098 -1.2 -4.6 D-alanyl-D-alanine carboxypeptidase compare
PP_2848 -1.2 -2.0 urease accessory protein compare
PP_0961 -1.2 -3.5 toluene tolerance protein compare
PP_3768 -1.2 -3.1 putative shikimate 5-dehydrogenase compare
PP_0218 -1.2 -3.8 Sensory box protein compare
PP_0809 -1.2 -3.0 disulfide bond formation protein B compare
PP_1113 -1.2 -5.5 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0283 -1.2 -2.1 Arginine/ornithine transport ATP-binding protein AotP compare
PP_4342 -1.1 -1.7 flagellar synthesis regulator, putative ATPase compare
PP_4980 -1.1 -2.9 ATP-dependent RNA helicase compare
PP_5045 -1.1 -3.0 tRNA sulfurtransferase compare
PP_4892 -1.1 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4471 -1.1 -2.2 Magnesium transporter compare
PP_3743 -1.1 -3.2 conserved exported protein of unknown function compare
PP_4941 -1.1 -2.1 conserved exported protein of unknown function compare
PP_1683 -1.1 -1.1 Transcriptional regulator, MarR family compare
PP_4196 -1.1 -0.9 conserved exported protein of unknown function compare
PP_5717 -1.1 -1.3 conserved protein of unknown function compare
PP_1440 -1.1 -3.6 tRNA (mo5U34)-methyltransferase compare
PP_1730 -1.1 -2.3 Probable M18 family aminopeptidase 2 compare
PP_5278 -1.1 -3.3 4-guanidinobutyraldehyde dehydrogenase compare
PP_0928 -1.1 -4.0 K+-dependent Na+/Ca+ exchanger related-protein compare
PP_4104 -1.1 -3.1 Glutathione S-transferase family protein compare
PP_0673 -1.0 -1.0 conserved protein of unknown function compare
PP_5038 -1.0 -2.5 conserved lipoprotein of unknown function compare
PP_5218 -1.0 -2.8 DedA family protein compare
PP_1066 -1.0 -2.2 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_5439 -1.0 -2.4 conserved protein of unknown function compare
PP_4847 -1.0 -2.4 chaperone modulatory of CbpA co-chaperone protein compare
PP_5047 -1.0 -2.7 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4994 -1.0 -1.8 conserved protein of unknown function compare
PP_3346 -1.0 -1.3 Nickel transporter ATP-binding protein compare
PP_1004 -1.0 -0.9 conserved protein of unknown function compare
PP_5143 -1.0 -1.6 conserved membrane protein of unknown function compare
PP_0598 -1.0 -4.2 paraquat-inducible protein A compare
PP_1128 -1.0 -2.4 OmpA family protein compare
PP_3551 -1.0 -1.4 DNA-binding response regulator, LuxR family compare
PP_4629 -1.0 -2.4 Sensory box protein compare
PP_0119 -1.0 -1.9 putative zinc uptake regulation protein ZUR compare
PP_0643 -1.0 -0.8 protein of unknown function compare
PP_2251 -1.0 -2.5 conserved membrane protein of unknown function compare
PP_2847 -1.0 -1.3 Urease accessory protein UreJ compare
PP_4495 -1.0 -5.2 aromatic amino acid transport protein compare
PP_0042 -1.0 -1.9 conserved exported protein of unknown function compare
PP_1110 -1.0 -1.8 serine acetyltransferase compare
PP_2862 -1.0 -3.3 Undecaprenyl-diphosphatase compare
PP_4560 -1.0 -2.2 putative Ribonuclease BN compare
PP_0346 -1.0 -3.9 putative Heptose kinase WapQ compare
PP_5161 -1.0 -3.2 putative lysophospholipase compare
PP_2083 -0.9 -1.8 putative Lipase compare


Specific Phenotypes

For 19 genes in this experiment

For phage PUT8 MOI 0.1 in Pseudomonas putida KT2440

For phage PUT8 MOI 0.1 across organisms