Experiment set35IT069 for Pseudomonas putida KT2440

Compare to:

PUT 8 MOI 1

200 most important genes:

  gene name fitness t score description  
PP_3627 -8.8 -4.9 conserved protein of unknown function compare
PP_1326 -8.1 -3.2 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_1523 -8.0 -3.9 conserved protein of unknown function compare
PP_0540 -7.9 -5.4 conserved inner membrane protein compare
PP_0434 -7.8 -5.4 Anhydro-N-acetylmuramic acid kinase compare
PP_4720 -7.8 -2.7 putative RNA binding protein compare
PP_4808 -7.6 -2.6 23S rRNA m3psi1915 methyltransferase compare
PP_0405 -7.5 -5.2 conserved protein of unknown function compare
PP_2031 -7.2 -2.5 conserved protein of unknown function compare
PP_2147 -7.2 -2.9 conserved exported protein of unknown function compare
PP_2148 -7.1 -4.9 transcription-repair coupling factor compare
PP_1774 -6.9 -2.3 conserved exported protein of unknown function compare
PP_2972 -6.8 -2.4 conserved protein of unknown function compare
PP_5114 -6.8 -3.0 putative adenine methyltransferase compare
PP_2145 -6.6 -3.9 beta-N-acetylglucosaminidase compare
PP_2253 -6.6 -2.3 Transcriptional regulator, GntR family compare
PP_1355 -6.6 -14.8 Muropeptide permease AmpG compare
PP_0406 -6.3 -3.7 Nucleotidyltransferase family protein compare
PP_3211 -6.3 -3.6 ABC transporter, ATP-binding protein compare
PP_1627 -6.3 -10.1 conserved protein of unknown function compare
PP_4094 -6.1 -2.1 conserved protein of unknown function compare
PP_1800 -6.0 -7.2 Oxidoreductase Rmd compare
PP_1650 -5.9 -11.1 Sensor protein GacS compare
PP_0794 -5.9 -3.2 1-phosphofructokinase monomer compare
PP_5217 -5.8 -11.5 Polyphosphate kinase compare
PP_3241 -5.7 -1.1 conserved exported protein of unknown function compare
PP_3098 -5.5 -1.1 conserved protein of unknown function compare
PP_1777 -5.5 -12.3 phosphomannomutase compare
PP_1764 -5.5 -3.4 Phosphoglycolate phosphatase 2 compare
PP_1075 -5.4 -11.2 glycerol kinase compare
PP_4099 -5.4 -12.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1799 -5.3 -8.9 GDP-mannose 4,6-dehydratase compare
PP_0066 -5.3 -7.9 Ribosomal RNA small subunit methyltransferase B compare
PP_1804 -5.3 -9.5 Glycosyl transferase WbpL compare
PP_2442 -5.2 -1.4 conserved protein of unknown function, DUF480 family compare
PP_1776 -5.2 -13.8 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1142 -5.2 -1.0 conserved protein of unknown function compare
PP_0630 -5.2 -1.0 DNA gyrase inhibitor YacG compare
PP_1237 -5.1 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1803 -5.1 -13.2 UDP-sugar epimerase compare
PP_1780 -5.0 -21.4 putative mannosyltransferase compare
PP_4874 -5.0 -2.0 50S ribosomal protein L9 compare
PP_4726 -5.0 -2.4 Chaperone protein DnaJ compare
PP_1801 -5.0 -11.7 Glycosyl transferase WbpY compare
PP_3808 -5.0 -1.4 Antibiotic synthesis protein MbtH compare
PP_2883 -5.0 -1.4 conserved protein of unknown function compare
PP_2847 -4.9 -1.4 Urease accessory protein UreJ compare
PP_1805 -4.9 -19.8 Polysaccharide biosynthesis protein compare
PP_0274 -4.9 -1.4 putative transcriptional regulator containing HTH domain compare
PP_1216 -4.9 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1186 -4.8 -2.1 two component system DNA-binding transcriptional dual regulator compare
PP_2681 -4.8 -1.3 coenzyme PQQ synthesis protein D compare
PP_4936 -4.8 -7.5 O-antigen polymerase compare
PP_0789 -4.8 -4.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2510 -4.8 -1.3 conserved protein of unknown function compare
PP_1344 -4.7 -1.8 conserved protein of unknown function compare
PP_1632 -4.7 -1.3 conserved protein of unknown function compare
PP_5583 -4.6 -1.3 conserved protein of unknown function compare
PP_1779 -4.6 -4.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4264 -4.6 -9.0 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1076 -4.5 -6.7 aquaglyceroporin compare
PP_5582 -4.5 -0.9 conserved protein of unknown function compare
PP_4902 -4.4 -2.5 Oligoribonuclease compare
PP_5146 -4.4 -7.6 RNA pyrophosphohydrolase compare
PP_1778 -4.4 -4.3 Lipopolysaccharide ABC export system, permease protein compare
PP_0960 -4.3 -5.3 phospholipid ABC transporter binding protein compare
PP_1802 -4.3 -15.0 glycosyl transferase compare
PP_0435 -4.3 -9.6 Peptidase, M23/M37 family compare
PP_1655 -4.3 -6.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0787 -4.2 -2.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1770 -4.1 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4938 -4.1 -7.8 putative Glycosyl transferase compare
PP_5701 -3.9 -1.9 conserved protein of unknown function compare
PP_5500 -3.7 -2.1 protein of unknown function compare
PP_5283 -3.6 -5.7 periplasmic dipeptide transport protein compare
PP_5058 -3.6 -5.7 Carboxy-terminal-processing protease compare
PP_0164 -3.6 -5.9 conserved protein of unknown function compare
PP_1702 -3.6 -4.4 Recombination-associated protein RdgC compare
PP_0962 -3.4 -2.3 toluene-tolerance protein compare
PP_1036 -3.3 -6.6 membrane-bound lytic murein transglycosylase F compare
PP_0872 -3.2 -7.0 Peptide chain release factor 3 compare
PP_5279 -3.2 -3.9 conserved protein of unknown function compare
PP_5145 -3.1 -13.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4944 -3.0 -2.6 Carbamoyltransferase compare
PP_2764 -2.9 -2.6 FMN reductase (NADPH) compare
PP_2903 -2.8 -1.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1663 -2.8 -4.4 conserved exported protein of unknown function compare
PP_0719 -2.8 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2371 -2.7 -3.8 Sulphite reductase hemoprotein, beta subunit compare
PP_0691 -2.7 -1.6 Glutamate 5-kinase compare
PP_1999 -2.7 -1.5 membrane protein required for colicin V production compare
PP_2030 -2.7 -2.9 conserved protein of unknown function compare
PP_3532 -2.7 -1.6 Transcriptional regulator, AsnC family compare
PP_2032 -2.6 -3.8 putative ATPase compare
PP_4895 -2.6 -1.8 tRNA dimethylallyltransferase compare
PP_0848 -2.6 -1.6 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0958 -2.5 -4.4 phospholipid ABC transporter ATP-binding subunit compare
PP_1798 -2.5 -5.9 Outer membrane efflux protein compare
PP_1122 -2.5 -1.9 OmpA family protein compare
PP_3989 -2.5 -2.3 DNA-cytosine methyltransferase compare
PP_2402 -2.4 -1.9 putative Sensor histidine kinase compare
PP_0937 -2.4 -3.6 endoribonuclease G (RNAse G) compare
PP_1790 -2.4 -1.3 putative Acylneuraminate cytidylyltransferase compare
PP_1609 -2.4 -1.4 conserved protein of unknown function compare
PP_2409 -2.3 -1.7 cobalt-zinc-cadmium resistance protein compare
PP_2005 -2.3 -3.1 conserved exported protein of unknown function compare
PP_4171 -2.3 -8.9 conserved exported protein of unknown function compare
PP_5586 -2.2 -2.6 exported protein of unknown function compare
PP_0361 -2.2 -1.8 putative Competence protein ComF compare
PP_4515 -2.2 -3.1 Transcriptional regulator, MarR family compare
PP_2027 -2.2 -2.9 conserved exported protein of unknown function compare
PP_2800 -2.2 -2.3 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_0293 -2.2 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1918 -2.2 -5.4 septation protein compare
PP_1783 -2.1 -1.3 dTDP-glucose pyrophosphorylase compare
PP_1789 -2.1 -1.7 Hydrolase, haloacid dehalogenase-like family compare
PP_0401 -2.1 -2.2 Ribosomal RNA small subunit methyltransferase A compare
PP_2414 -2.0 -1.5 conserved exported protein of unknown function compare
PP_2029 -2.0 -1.1 von Willebrand factor type A domain protein compare
PP_0377 -2.0 -1.3 coenzyme PQQ synthesis protein D compare
PP_1428 -2.0 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_0393 -2.0 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5039 -1.9 -1.3 conserved protein of unknown function compare
PP_5640 -1.9 -1.2 conserved protein of unknown function compare
PP_1807 -1.9 -4.1 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_5095 -1.9 -0.7 pyrroline-5-carboxylate reductase compare
PP_2302 -1.9 -3.3 DNA-binding, ATP-dependent protease compare
PP_1871 -1.9 -2.2 Protease HtpX compare
PP_1562 -1.9 -1.2 putative Phage terminase, small subunit compare
PP_4642 -1.9 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_1454 -1.8 -1.8 conserved protein of unknown function compare
PP_t29 -1.8 -1.6 tRNA-Ala compare
PP_0025 -1.8 -1.0 hypothetical protein compare
PP_4214 -1.8 -2.4 pyoverdine biosynthesis related protein compare
PP_5600 -1.8 -1.9 conserved protein of unknown function compare
PP_0961 -1.8 -3.5 toluene tolerance protein compare
PP_2429 -1.8 -1.1 putative Membrane protein compare
PP_t49 -1.8 -2.8 tRNA-Met compare
PP_4342 -1.8 -2.4 flagellar synthesis regulator, putative ATPase compare
PP_4217 -1.7 -8.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_3806 -1.7 -0.9 Hydrolase, isochorismatase family compare
PP_1729 -1.7 -1.2 conserved protein of unknown function compare
PP_5100 -1.7 -2.3 dITP/XTP pyrophosphatase compare
PP_4798 -1.7 -3.0 putative Membrane-bound lytic murein transglycosylase compare
PP_5270 -1.7 -2.4 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_5706 -1.7 -1.5 Sec translocation complex - SecG subunit compare
PP_4817 -1.7 -1.8 MaoC domain protein compare
PP_4129 -1.7 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0948 -1.7 -1.1 Phosphocarrier protein HPr compare
PP_0673 -1.7 -1.1 conserved protein of unknown function compare
PP_1654 -1.7 -1.9 cysteine synthase B compare
PP_3320 -1.6 -1.6 conserved protein of unknown function compare
PP_1629 -1.6 -2.8 Protein RecA compare
PP_0941 -1.6 -1.6 putative ribosome associated protein compare
PP_2959 -1.6 -1.7 Alkylhydroperoxidase AhpD domain protein compare
PP_4875 -1.6 -1.9 conserved membrane protein of unknown function compare
PP_0127 -1.6 -1.7 Thiol:disulfide interchange protein compare
PP_2796 -1.6 -1.7 conserved protein of unknown function compare
PP_4124 -1.6 -2.8 NADH-quinone oxidoreductase subunit G compare
PP_2163 -1.6 -3.0 VacJ lipoprotein compare
PP_2186 -1.6 -2.1 putative Formate dehydrogenase, delta subunit compare
PP_3338 -1.5 -1.3 putative cytochrome bd-type quinol oxidase compare
PP_1309 -1.5 -3.1 conserved exported protein of unknown function compare
PP_2668 -1.5 -0.9 ABC efflux transporter, ATP-binding protein compare
PP_1111 -1.5 -3.1 putative Synthetase compare
PP_0725 -1.5 -2.7 conserved hypothetical TPR repeat protein compare
PP_5546 -1.5 -1.6 conserved protein of unknown function compare
PP_2073 -1.5 -1.0 Acetyltransferase, GNAT family compare
PP_4832 -1.5 -1.8 Precorrin-6x reductase compare
PP_1493 -1.5 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5439 -1.5 -1.9 conserved protein of unknown function compare
PP_2251 -1.5 -3.5 conserved membrane protein of unknown function compare
PP_1683 -1.5 -0.8 Transcriptional regulator, MarR family compare
PP_1096 -1.5 -1.0 putative electron transport complex protein compare
PP_4896 -1.4 -4.4 DNA mismatch repair protein MutL compare
PP_5221 -1.4 -1.0 conserved protein of unknown function, UPF0178 family compare
PP_0287 -1.4 -3.0 conserved exported protein of unknown function compare
PP_0339 -1.4 -3.2 Pyruvate dehydrogenase E1 component compare
PP_1656 -1.4 -4.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_0949 -1.4 -2.3 putative ATP-binding protein UPF0042 compare
PP_1926 -1.4 -1.8 putative phosphotyrosine-protein phosphatase compare
PP_4098 -1.4 -1.5 UvrABC system protein C compare
PP_4994 -1.4 -1.9 conserved protein of unknown function compare
PP_2101 -1.4 -1.6 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_0819 -1.4 -1.8 conserved ferredoxin-like protein of unknown function compare
PP_4006 -1.4 -3.0 Putative arginyl-tRNA--protein transferase compare
PP_4897 -1.4 -1.9 N-acetylmuramoyl-L-alanine amidase compare
PP_5045 -1.4 -2.9 tRNA sulfurtransferase compare
PP_0251 -1.4 -2.8 conserved membrane protein of unknown function compare
PP_0886 -1.4 -1.7 conserved exported protein of unknown function compare
PP_1508 -1.3 -1.6 conserved protein of unknown function compare
PP_3094 -1.3 -1.5 conserved exported protein of unknown function compare
PP_4034 -1.3 -2.5 N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2 compare
PP_4008 -1.3 -2.8 ATP-dependent serine protease compare
PP_3035 -1.3 -1.7 conserved protein of unknown function compare
PP_2121 -1.3 -0.8 putative Lipoprotein compare
PP_1797 -1.3 -3.2 HlyD family secretion protein compare
PP_0262 -1.3 -1.3 conserved protein of unknown function compare
PP_3769 -1.3 -3.0 conserved exported protein of unknown function compare
PP_4971 -1.3 -4.5 putative Outer membrane-bound lytic murein transglycolase A compare


Specific Phenotypes

For 9 genes in this experiment

For phage PUT 8 MOI 1 in Pseudomonas putida KT2440

For phage PUT 8 MOI 1 across organisms