Experiment set35IT066 for Pseudomonas putida KT2440

Compare to:

PUT8 MOI 10

200 most important genes:

  gene name fitness t score description  
PP_0540 -7.9 -5.5 conserved inner membrane protein compare
PP_0789 -7.9 -5.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1650 -7.8 -17.8 Sensor protein GacS compare
PP_0405 -7.5 -5.2 conserved protein of unknown function compare
PP_4099 -7.5 -18.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0434 -7.4 -7.2 Anhydro-N-acetylmuramic acid kinase compare
PP_1774 -7.1 -3.9 conserved exported protein of unknown function compare
PP_1355 -6.9 -14.0 Muropeptide permease AmpG compare
PP_5114 -6.8 -4.7 putative adenine methyltransferase compare
PP_2145 -6.8 -4.7 beta-N-acetylglucosaminidase compare
PP_0406 -6.4 -4.4 Nucleotidyltransferase family protein compare
PP_3627 -6.2 -5.5 conserved protein of unknown function compare
PP_4936 -6.1 -6.0 O-antigen polymerase compare
PP_1803 -6.1 -12.4 UDP-sugar epimerase compare
PP_1776 -5.8 -9.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1800 -5.7 -10.9 Oxidoreductase Rmd compare
PP_1780 -5.4 -13.9 putative mannosyltransferase compare
PP_1805 -5.3 -22.9 Polysaccharide biosynthesis protein compare
PP_1777 -5.2 -16.8 phosphomannomutase compare
PP_1764 -5.2 -5.0 Phosphoglycolate phosphatase 2 compare
PP_1801 -5.1 -12.4 Glycosyl transferase WbpY compare
PP_1802 -5.1 -19.6 glycosyl transferase compare
PP_1779 -5.0 -3.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4874 -5.0 -3.3 50S ribosomal protein L9 compare
PP_1778 -5.0 -3.4 Lipopolysaccharide ABC export system, permease protein compare
PP_4944 -4.9 -3.4 Carbamoyltransferase compare
PP_0435 -4.9 -4.8 Peptidase, M23/M37 family compare
PP_1799 -4.9 -17.9 GDP-mannose 4,6-dehydratase compare
PP_2148 -4.8 -15.8 transcription-repair coupling factor compare
PP_4938 -4.6 -12.2 putative Glycosyl transferase compare
PP_1804 -4.5 -9.4 Glycosyl transferase WbpL compare
PP_2402 -4.5 -3.1 putative Sensor histidine kinase compare
PP_4902 -4.4 -3.0 Oligoribonuclease compare
PP_0164 -3.9 -8.2 conserved protein of unknown function compare
PP_1627 -3.8 -9.3 conserved protein of unknown function compare
PP_4726 -3.8 -4.4 Chaperone protein DnaJ compare
PP_5279 -3.6 -4.6 conserved protein of unknown function compare
PP_5217 -3.3 -13.1 Polyphosphate kinase compare
PP_1654 -3.2 -2.2 cysteine synthase B compare
PP_1215 -3.0 -2.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_0719 -2.9 -2.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1326 -2.8 -1.8 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0066 -2.7 -5.1 Ribosomal RNA small subunit methyltransferase B compare
PP_4895 -2.6 -1.8 tRNA dimethylallyltransferase compare
PP_1655 -2.6 -6.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5283 -2.6 -4.9 periplasmic dipeptide transport protein compare
PP_1898 -2.5 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_0691 -2.5 -2.4 Glutamate 5-kinase compare
PP_1663 -2.5 -8.6 conserved exported protein of unknown function compare
PP_1702 -2.4 -3.7 Recombination-associated protein RdgC compare
PP_0339 -2.2 -3.9 Pyruvate dehydrogenase E1 component compare
PP_5146 -2.2 -7.2 RNA pyrophosphohydrolase compare
PP_1770 -2.2 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0958 -2.1 -5.5 phospholipid ABC transporter ATP-binding subunit compare
PP_2032 -2.1 -5.0 putative ATPase compare
PP_1075 -2.0 -7.1 glycerol kinase compare
PP_1775 -1.9 -2.6 Metallo-beta-lactamase family protein compare
PP_5145 -1.9 -14.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0962 -1.9 -3.6 toluene-tolerance protein compare
PP_0937 -1.9 -4.8 endoribonuclease G (RNAse G) compare
PP_1428 -1.9 -2.9 Sigma factor AlgU negative regulatory protein compare
PP_1493 -1.8 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4126 -1.8 -2.0 NADH-quinone oxidoreductase subunit I compare
PP_2027 -1.8 -6.7 conserved exported protein of unknown function compare
PP_4471 -1.7 -3.6 Magnesium transporter compare
PP_4171 -1.7 -7.8 conserved exported protein of unknown function compare
PP_5329 -1.7 -3.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0948 -1.7 -1.9 Phosphocarrier protein HPr compare
PP_0787 -1.6 -5.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5058 -1.6 -4.6 Carboxy-terminal-processing protease compare
PP_4941 -1.6 -3.4 conserved exported protein of unknown function compare
PP_1798 -1.6 -7.2 Outer membrane efflux protein compare
PP_2378 -1.6 -2.4 Fe/S biogenesis protein NfuA compare
PP_0794 -1.6 -6.0 1-phosphofructokinase monomer compare
PP_1664 -1.6 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1523 -1.5 -3.3 conserved protein of unknown function compare
PP_2087 -1.5 -2.0 CmpX protein compare
PP_0960 -1.5 -6.3 phospholipid ABC transporter binding protein compare
PP_1076 -1.5 -5.2 aquaglyceroporin compare
PP_0001 -1.5 -1.7 probable chromosome-partitioning protein compare
PP_1036 -1.5 -6.4 membrane-bound lytic murein transglycosylase F compare
PP_0725 -1.5 -3.7 conserved hypothetical TPR repeat protein compare
PP_1871 -1.4 -4.2 Protease HtpX compare
PP_1656 -1.4 -5.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_0872 -1.4 -4.7 Peptide chain release factor 3 compare
PP_2030 -1.4 -3.9 conserved protein of unknown function compare
PP_0346 -1.3 -6.0 putative Heptose kinase WapQ compare
PP_2414 -1.3 -0.8 conserved exported protein of unknown function compare
PP_0119 -1.3 -3.9 putative zinc uptake regulation protein ZUR compare
PP_4264 -1.3 -4.4 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_0598 -1.3 -8.0 paraquat-inducible protein A compare
PP_1216 -1.3 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5331 -1.3 -2.7 Long-chain acyl-CoA thioester hydrolase compare
PP_4004 -1.2 -2.7 DNA translocase FtsK compare
PP_2163 -1.2 -5.1 VacJ lipoprotein compare
PP_t29 -1.2 -1.5 tRNA-Ala compare
PP_5216 -1.2 -2.3 exopolyphosphatase compare
PP_4896 -1.2 -5.4 DNA mismatch repair protein MutL compare
PP_5471 -1.2 -2.1 putative response regulator receiver protein compare
PP_0218 -1.2 -5.5 Sensory box protein compare
PP_1790 -1.1 -2.7 putative Acylneuraminate cytidylyltransferase compare
PP_4199 -1.1 -1.1 putative Lipoprotein compare
PP_1309 -1.1 -4.9 conserved exported protein of unknown function compare
PP_1237 -1.1 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1204 -1.1 -2.7 putative Lipoprotein compare
PP_5439 -1.1 -4.3 conserved protein of unknown function compare
PP_1918 -1.1 -6.5 septation protein compare
PP_2615 -1.0 -2.9 hemolysin-coregulated protein compare
PP_4217 -1.0 -8.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4073 -1.0 -2.7 conserved exported protein of unknown function compare
PP_2441 -1.0 -3.3 conserved protein of unknown function compare
PP_5748 -1.0 -1.7 cytochrome c heme lyase subunit compare
PP_0961 -1.0 -4.3 toluene tolerance protein compare
PP_2568 -1.0 -1.3 Ring-cleaving dioxygenase compare
PP_0599 -1.0 -7.6 paraquat-inducible protein B compare
PP_4701 -1.0 -0.8 glucose-6-phosphate isomerase compare
PP_4515 -1.0 -3.6 Transcriptional regulator, MarR family compare
PP_1789 -1.0 -2.4 Hydrolase, haloacid dehalogenase-like family compare
PP_4008 -1.0 -3.4 ATP-dependent serine protease compare
PP_4937 -1.0 -1.7 toluene tolerance protein compare
PP_5SB -1.0 -2.9 5S ribosomal RNA compare
PP_1783 -1.0 -1.5 dTDP-glucose pyrophosphorylase compare
PP_2186 -1.0 -1.8 putative Formate dehydrogenase, delta subunit compare
PP_1713 -1.0 -1.4 Transcriptional regulator PcaQ compare
PP_2820 -1.0 -1.9 HTH-type transcriptional regulator nfxB compare
PP_5328 -0.9 -1.2 putative phosphate transport system permease protein compare
PP_3769 -0.9 -3.4 conserved exported protein of unknown function compare
PP_1626 -0.9 -3.8 DNA mismatch repair protein MutS compare
PP_5745 -0.9 -3.9 paraquat-inducible protein A compare
PP_2031 -0.9 -1.6 conserved protein of unknown function compare
PP_1909 -0.9 -2.5 putative septum formation protein compare
PP_2098 -0.9 -4.9 D-alanyl-D-alanine carboxypeptidase compare
PP_2029 -0.9 -1.8 von Willebrand factor type A domain protein compare
PP_5453 -0.9 -1.3 conserved protein of unknown function compare
PP_5310 -0.9 -3.1 junction-specific ATP-dependent DNA helicase compare
PP_5594 -0.9 -2.1 conserved protein of unknown function compare
PP_5284 -0.9 -2.4 UPF0758 protein PP_5284 compare
PP_4964 -0.9 -1.9 D-erythrose 4-phosphate dehydrogenase compare
PP_1807 -0.9 -4.5 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_1468 -0.8 -1.7 Tyrosine recombinase XerD compare
PP_4424 -0.8 -1.8 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2005 -0.8 -4.0 conserved exported protein of unknown function compare
PP_0959 -0.8 -1.8 phospholipid ABC transporter compare
PP_3726 -0.8 -1.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_4971 -0.8 -5.0 putative Outer membrane-bound lytic murein transglycolase A compare
PP_3930 -0.8 -1.6 conserved exported protein of unknown function compare
PP_4121 -0.8 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_0166 -0.8 -6.0 HlyD family secretion protein compare
PP_3265 -0.8 -1.9 putative phosphohydrolase of unknown function compare
PP_0042 -0.8 -1.9 conserved exported protein of unknown function compare
PP_4836 -0.8 -3.4 conserved exported protein of unknown function compare
PP_2188 -0.8 -3.9 putative tRNA-(Ms(2)io(6)a)-hydroxylase compare
PP_1045 -0.8 -0.8 Type II secretion pathway protein XcpP compare
PP_0770 -0.8 -1.8 PemI-like protein compare
PP_t49 -0.8 -2.2 tRNA-Met compare
PP_4952 -0.8 -1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5586 -0.8 -1.7 exported protein of unknown function compare
PP_5101 -0.8 -3.5 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_1766 -0.8 -2.2 methylthioribose-1-phosphate isomerase compare
PP_4006 -0.8 -3.9 Putative arginyl-tRNA--protein transferase compare
PP_2078 -0.8 -3.2 transcriptional activator protein LysR compare
PP_5240 -0.8 -1.6 Response regulator compare
PP_5100 -0.8 -1.8 dITP/XTP pyrophosphatase compare
PP_5022 -0.8 -1.3 Glutamine transport ATP-binding protein GlnQ compare
PP_0165 -0.7 -5.7 GGDEF domain protein compare
PP_1268 -0.7 -1.1 putative HtrA suppressor protein sohA compare
PP_0125 -0.7 -2.1 putative cytochrome c-type protein compare
PP_4980 -0.7 -3.1 ATP-dependent RNA helicase compare
PP_2028 -0.7 -2.3 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5227 -0.7 -3.7 diaminopimelate decarboxylase compare
PP_2348 -0.7 -2.6 Sensor histidine kinase compare
PP_2345 -0.7 -1.5 conserved exported protein of unknown function compare
PP_3227 -0.7 -2.4 Transcriptional regulator, LysR family compare
PP_1938 -0.7 -1.3 conserved protein of unknown function compare
PP_4805 -0.7 -4.0 membrane-bound lytic murein transglycosylase B compare
PP_4373 -0.7 -5.3 Transcriptional regulator FleQ compare
PP_4798 -0.7 -3.5 putative Membrane-bound lytic murein transglycosylase compare
PP_0928 -0.7 -4.5 K+-dependent Na+/Ca+ exchanger related-protein compare
PP_4495 -0.7 -5.3 aromatic amino acid transport protein compare
PP_2376 -0.7 -5.6 Esterified fatty acid cis/trans isomerase compare
PP_1187 -0.7 -2.4 sensor protein compare
PP_1749 -0.7 -2.7 GNAT family acetyltransferase compare
PP_1906 -0.7 -2.2 ribosomal large subunit pseudouridine synthase C compare
PP_4500 -0.7 -2.9 TrpH family protein compare
PP_4723 -0.7 -0.5 Carbamoyl-phosphate synthase large chain compare
PP_5007 -0.7 -1.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2759 -0.7 -1.5 ribose ABC transporter - ATP-binding subunit compare
PP_0167 -0.7 -5.3 Toxin secretion ATP-binding protein compare
PP_2309 -0.7 -0.9 conserved protein of unknown function compare
PP_4724 -0.7 -0.4 Carbamoyl-phosphate synthase small chain compare
PP_4018 -0.7 -1.7 Acetyltransferase, GNAT family compare
PP_1044 -0.7 -2.1 Lipoprotein UxpA compare
PP_0127 -0.7 -1.4 Thiol:disulfide interchange protein compare
PP_5143 -0.7 -1.6 conserved membrane protein of unknown function compare
PP_4570 -0.6 -4.1 conserved protein of unknown function compare
PP_0087 -0.6 -1.1 conserved exported protein of unknown function compare
PP_5161 -0.6 -2.6 putative lysophospholipase compare
PP_0393 -0.6 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1491 -0.6 -2.2 CheW domain protein compare
PP_1797 -0.6 -3.0 HlyD family secretion protein compare


Specific Phenotypes

For 10 genes in this experiment

For phage PUT8 MOI 10 in Pseudomonas putida KT2440

For phage PUT8 MOI 10 across organisms