Experiment set34S672 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Genes with specific phenotypes:

  gene name fitness t score description  
PS417_11860 -4.9 -7.4 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
PS417_11855 -4.5 -9.8 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
PS417_10925 -4.4 -9.9 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
PS417_11850 -4.4 -8.8 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
PS417_11875 -4.3 -6.5 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_11890 -4.3 -8.2 Inositol transport system ATP-binding protein (from data) compare
PS417_11870 -4.2 -9.8 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_17510 -3.9 -14.9 histidine kinase compare
PS417_11895 -3.5 -11.5 Inositol transport system permease protein (from data) compare
PS417_26225 -2.9 -5.7 electron transfer flavoprotein subunit beta compare
PS417_02680 -2.7 -5.1 hypothetical protein compare
PS417_22845 -2.2 -15.2 membrane protein conserved
PS417_06195 -2.2 -7.2 succinyldiaminopimelate aminotransferase compare
PS417_22135 -2.0 -10.7 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_26540 -1.8 -8.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_04435 -1.8 -11.6 uracil phosphoribosyltransferase compare
PS417_26000 -1.8 -6.0 8-amino-7-oxononanoate synthase compare
PS417_22125 -1.8 -8.1 porin compare
PS417_23830 -1.6 -7.5 hypothetical protein compare
PS417_13830 -1.6 -5.0 hypothetical protein compare
PS417_22145 -1.6 -8.1 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_08665 -1.6 -5.2 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_12795 -1.5 -7.9 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_22140 -1.4 -7.9 glucose/xylose ABC transporter, permease component 2 (from data) compare
PS417_08345 -1.2 -7.8 chemotaxis protein compare
PS417_12435 -1.0 -5.1 hypothetical protein compare
PS417_10565 +1.2 6.6 LysR family transcriptional regulator compare
PS417_10560 +1.3 8.2 choline dehydrogenase compare
PS417_22965 +2.1 12.5 DNA mismatch repair protein MutT compare


Specific phenotypes for in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms