Experiment set34S672 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_01575 -7.8 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18595 -6.9 -4.6 3-isopropylmalate dehydratase compare
PS417_23805 -6.7 -4.7 acetolactate synthase 3 regulatory subunit compare
PS417_18600 -6.6 -3.9 isopropylmalate isomerase compare
PS417_10920 -6.2 -3.4 LysR family transcriptional regulator compare
PS417_26740 -6.1 -8.3 homoserine acetyltransferase compare
PS417_04415 -6.0 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01565 -5.8 -4.0 imidazole glycerol phosphate synthase compare
PS417_25720 -5.7 -6.7 anthranilate synthase component II compare
PS417_02005 -5.6 -8.6 glutamate synthase compare
PS417_23910 -5.5 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_23800 -5.5 -9.9 ketol-acid reductoisomerase compare
PS417_14065 -5.2 -7.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_25725 -5.0 -11.2 anthranilate synthase component I compare
PS417_23915 -5.0 -3.5 pantoate--beta-alanine ligase compare
PS417_04420 -5.0 -10.1 histidinol dehydrogenase compare
PS417_18585 -5.0 -5.9 3-isopropylmalate dehydrogenase compare
PS417_11860 -4.9 -7.4 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
PS417_11885 -4.8 -4.6 Inositol transport system sugar-binding protein (from data) compare
PS417_27040 -4.7 -2.5 3-phosphoglycerate dehydrogenase compare
PS417_02510 -4.6 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18560 -4.6 -6.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26985 -4.5 -6.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_11855 -4.5 -9.8 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
PS417_10925 -4.4 -9.9 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
PS417_11850 -4.4 -8.8 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
PS417_11875 -4.3 -6.5 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_16005 -4.3 -4.4 ATPase compare
PS417_11890 -4.3 -8.2 Inositol transport system ATP-binding protein (from data) compare
PS417_22780 -4.2 -4.0 XRE family transcriptional regulator compare
PS417_04595 -4.2 -2.1 cell division protein MraZ compare
PS417_11870 -4.2 -9.8 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_23385 -4.1 -9.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_18530 -4.0 -5.9 O-succinylhomoserine sulfhydrylase compare
PS417_01855 -4.0 -3.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_23545 -4.0 -2.7 gamma-glutamyl kinase compare
PS417_17510 -3.9 -14.9 histidine kinase compare
PS417_27305 -3.8 -5.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_02000 -3.8 -11.6 glutamate synthase compare
PS417_17565 -3.8 -3.8 branched-chain amino acid aminotransferase compare
PS417_16510 -3.8 -5.6 Clp protease ClpX compare
PS417_21480 -3.7 -2.1 23S rRNA pseudouridylate synthase compare
PS417_12805 -3.7 -11.9 glycogen branching protein compare
PS417_02415 -3.6 -5.4 phosphoserine phosphatase compare
PS417_23810 -3.6 -8.3 acetolactate synthase 3 catalytic subunit compare
PS417_26890 -3.5 -7.0 dihydroxy-acid dehydratase compare
PS417_11895 -3.5 -11.5 Inositol transport system permease protein (from data) compare
PS417_23390 -3.5 -7.0 ubiquinol oxidase subunit II compare
PS417_12290 -3.4 -9.6 sulfite reductase compare
PS417_21125 -3.4 -10.1 phosphoadenosine phosphosulfate reductase compare
PS417_05595 -3.4 -7.1 ornithine carbamoyltransferase compare
PS417_23995 -3.3 -1.1 preprotein translocase subunit SecG compare
PS417_23370 -3.3 -4.7 protoheme IX farnesyltransferase compare
PS417_16990 -3.3 -5.1 acyl-CoA dehydrogenase compare
PS417_18690 -3.2 -3.6 aromatic amino acid aminotransferase compare
PS417_26745 -3.2 -3.6 methionine biosynthesis protein MetW compare
PS417_25715 -3.2 -5.6 anthranilate phosphoribosyltransferase compare
PS417_23900 -3.1 -9.9 poly(A) polymerase compare
PS417_02975 -3.0 -3.1 3-dehydroquinate dehydratase compare
PS417_25710 -3.0 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_21000 -3.0 -2.3 CrfX protein compare
PS417_01580 -2.9 -1.3 imidazole glycerol phosphate synthase compare
PS417_26225 -2.9 -5.7 electron transfer flavoprotein subunit beta compare
PS417_23950 -2.9 -1.6 polynucleotide phosphorylase/polyadenylase compare
PS417_07560 -2.9 -2.4 universal stress protein UspA compare
PS417_20775 -2.8 -2.7 coproporphyrinogen III oxidase compare
PS417_26230 -2.8 -5.6 electron transfer flavoprotein subunit alpha compare
PS417_06530 -2.8 -1.9 membrane protein compare
PS417_07165 -2.8 -4.9 dihydrodipicolinate synthase compare
PS417_12695 -2.8 -4.9 mannitol dehydrogenase compare
PS417_16465 -2.8 -7.4 sirohydrochlorin ferrochelatase compare
PS417_23110 -2.8 -5.6 2-isopropylmalate synthase compare
PS417_02680 -2.7 -5.1 hypothetical protein compare
PS417_20160 -2.7 -3.5 cysteine synthase compare
PS417_24745 -2.7 -1.8 gamma-glutamyl phosphate reductase compare
PS417_21705 -2.7 -6.5 arginine N-succinyltransferase compare
PS417_04275 -2.6 -12.3 hypothetical protein compare
PS417_28050 -2.6 -2.8 hypothetical protein compare
PS417_26005 -2.6 -11.0 biotin synthase compare
PS417_01560 -2.6 -3.0 imidazoleglycerol-phosphate dehydratase compare
PS417_23375 -2.6 -1.7 cytochrome C oxidase compare
PS417_12855 -2.5 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23380 -2.5 -2.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_08540 -2.5 -2.0 RNA helicase compare
PS417_00045 -2.4 -1.4 glycerol acyltransferase compare
PS417_22850 -2.4 -8.6 virulence factor family protein compare
PS417_27135 -2.3 -0.8 glutamine synthetase compare
PS417_07170 -2.3 -3.4 hypothetical protein compare
PS417_10245 -2.3 -2.5 hypothetical protein compare
PS417_00370 -2.2 -1.0 hypothetical protein compare
PS417_23025 -2.2 -5.2 murein transglycosylase compare
PS417_26695 -2.2 -1.0 uracil phosphoribosyltransferase compare
PS417_01710 -2.2 -2.7 histidine utilization repressor compare
PS417_21630 -2.2 -2.7 magnesium transporter compare
PS417_11865 -2.2 -2.2 xylose isomerase compare
PS417_22775 -2.2 -8.7 histidine kinase compare
PS417_22845 -2.2 -15.2 membrane protein conserved
PS417_24800 -2.2 -3.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_06195 -2.2 -7.2 succinyldiaminopimelate aminotransferase compare
PS417_08245 -2.0 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_22135 -2.0 -10.7 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_01850 -2.0 -2.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02950 -2.0 -3.2 tRNA-dihydrouridine synthase B compare
PS417_13805 -2.0 -8.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_13790 -2.0 -4.0 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_17515 -1.9 -2.7 GfdT protein compare
PS417_16555 -1.9 -1.3 cupin compare
PS417_04875 -1.9 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_26240 -1.9 -3.0 N-methylproline demethylase compare
PS417_07615 -1.9 -4.4 TetR family transcriptional regulator compare
PS417_13820 -1.9 -8.5 UDP-glucose 6-dehydrogenase compare
PS417_06375 -1.9 -0.6 deoxycytidine triphosphate deaminase compare
PS417_05815 -1.9 -3.8 recombinase RecA compare
PS417_22840 -1.8 -1.6 tRNA-Met compare
PS417_27195 -1.8 -0.8 N-acetylglutamate synthase compare
PS417_22680 -1.8 -3.6 chemotaxis protein CheY compare
PS417_04270 -1.8 -5.5 ribonuclease G compare
PS417_14140 -1.8 -3.5 membrane protein compare
PS417_27300 -1.8 -0.8 cell division protein ZapA compare
PS417_25985 -1.8 -2.2 dethiobiotin synthetase compare
PS417_26540 -1.8 -8.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_09235 -1.8 -1.2 molecular chaperone compare
PS417_21625 -1.8 -1.4 DNA-binding protein compare
PS417_04435 -1.8 -11.6 uracil phosphoribosyltransferase compare
PS417_03560 -1.8 -1.4 GTP-binding protein compare
PS417_26000 -1.8 -6.0 8-amino-7-oxononanoate synthase compare
PS417_22620 -1.8 -3.4 pyruvate kinase compare
PS417_17780 -1.8 -1.9 Ais protein compare
PS417_22125 -1.8 -8.1 porin compare
PS417_26995 -1.8 -8.5 phosphoserine phosphatase compare
PS417_01955 -1.7 -6.6 peptidase compare
PS417_27005 -1.7 -1.3 membrane protein compare
PS417_01095 -1.7 -1.6 amino acid ABC transporter ATP-binding protein compare
PS417_20130 -1.7 -10.7 dehydrogenase compare
PS417_26235 -1.7 -5.5 (Fe-S)-binding protein compare
PS417_17035 -1.7 -1.6 Cro/Cl family transcriptional regulator compare
PS417_08170 -1.7 -6.1 capsular biosynthesis protein compare
PS417_22445 -1.7 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_27870 -1.7 -1.9 ATP-dependent DNA helicase RecG compare
PS417_03260 -1.7 -1.1 5S ribosomal RNA compare
PS417_02555 -1.6 -6.2 exoribonuclease R compare
PS417_22450 -1.6 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_04685 -1.6 -4.8 histidine kinase compare
PS417_25990 -1.6 -4.6 malonyl-CoA O-methyltransferase compare
PS417_12310 -1.6 -6.0 methionine synthase compare
PS417_22130 -1.6 -4.5 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_26260 -1.6 -1.3 hypothetical protein compare
PS417_22565 -1.6 -0.5 formyltetrahydrofolate deformylase compare
PS417_23830 -1.6 -7.5 hypothetical protein compare
PS417_22690 -1.6 -2.9 phosphogluconate dehydratase compare
PS417_19835 -1.6 -1.3 flagellar biosynthesis protein FliS compare
PS417_19285 -1.6 -1.9 ankyrin compare
PS417_13830 -1.6 -5.0 hypothetical protein compare
PS417_11530 -1.6 -4.7 amidase compare
PS417_22145 -1.6 -8.1 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_08665 -1.6 -5.2 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_06780 -1.5 -2.7 TetR family transcriptional regulator compare
PS417_08090 -1.5 -0.7 3-oxoacyl-ACP reductase compare
PS417_19850 -1.5 -5.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_21430 -1.5 -1.0 3-oxoacyl-ACP synthase compare
PS417_18390 -1.5 -3.9 LacI family transcriptional regulator compare
PS417_13800 -1.5 -2.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_06330 -1.5 -4.7 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_24500 -1.5 -3.0 DEAD/DEAH box helicase compare
PS417_24705 -1.5 -1.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_28220 -1.5 -1.6 LysR family transcriptional regulator compare
PS417_23205 -1.5 -2.3 transcriptional regulator compare
PS417_12795 -1.5 -7.9 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_06680 -1.5 -3.0 nuclease PIN compare
PS417_22570 -1.4 -0.6 H-NS histone compare
PS417_01620 -1.4 -2.0 preprotein translocase subunit SecB compare
PS417_00160 -1.4 -3.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_23415 -1.4 -3.5 AraC family transcriptional regulator compare
PS417_06245 -1.4 -1.4 zinc metallopeptidase RseP compare
PS417_01285 -1.4 -1.9 haloacid dehalogenase compare
PS417_22140 -1.4 -7.9 glucose/xylose ABC transporter, permease component 2 (from data) compare
PS417_28070 -1.4 -4.2 phosphate ABC transporter ATP-binding protein compare
PS417_05500 -1.4 -2.5 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_23410 -1.4 -4.5 membrane protein compare
PS417_07695 -1.4 -4.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_12120 -1.4 -3.1 IclR family transcriptional regulator compare
PS417_15095 -1.4 -2.7 hypothetical protein compare
PS417_05905 -1.4 -2.1 hypothetical protein compare
PS417_16560 -1.3 -2.2 GNAT family acetyltransferase compare
PS417_01570 -1.3 -1.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_28075 -1.3 -5.9 phosphate ABC transporter permease compare
PS417_01950 -1.3 -5.4 malate dehydrogenase compare
PS417_08135 -1.3 -0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02885 -1.3 -1.2 hypothetical protein compare
PS417_05520 -1.3 -4.7 histidine kinase compare
PS417_28230 -1.3 -1.8 transcriptional regulator compare
PS417_28080 -1.3 -8.2 phosphate ABC transporter permease compare
PS417_02895 -1.3 -2.1 precorrin-6Y C5,15-methyltransferase compare
PS417_19685 -1.3 -6.8 protein phosphatase compare
PS417_04585 -1.3 -0.7 hypothetical protein compare
PS417_25380 -1.3 -2.9 hypothetical protein compare
PS417_04380 -1.3 -0.7 ABC transporter permease compare
PS417_08410 -1.3 -1.3 hypothetical protein compare
PS417_24525 -1.3 -1.9 nuclease compare
PS417_13795 -1.3 -4.6 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare


Specific Phenotypes

For 29 genes in this experiment

For in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms