Experiment set34S671 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Genes with specific phenotypes:

  gene name fitness t score description  
PS417_17510 -3.8 -11.8 histidine kinase compare
PS417_22845 -3.6 -18.4 membrane protein conserved
PS417_10925 -3.2 -6.3 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
PS417_11860 -3.2 -5.7 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
PS417_11855 -3.2 -8.3 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
PS417_11870 -2.8 -8.8 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_11895 -2.6 -10.6 Inositol transport system permease protein (from data) compare
PS417_25990 -2.6 -6.3 malonyl-CoA O-methyltransferase compare
PS417_11890 -2.5 -5.2 Inositol transport system ATP-binding protein (from data) compare
PS417_06195 -2.3 -5.9 succinyldiaminopimelate aminotransferase compare
PS417_11850 -2.3 -5.7 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
PS417_09540 -2.0 -8.9 penicillin-binding protein 2 compare
PS417_26000 -1.8 -6.8 8-amino-7-oxononanoate synthase compare
PS417_26540 -1.7 -8.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_22125 -1.7 -8.3 porin compare
PS417_22135 -1.6 -5.2 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_04435 -1.5 -8.2 uracil phosphoribosyltransferase compare
PS417_12435 -1.5 -6.8 hypothetical protein compare
PS417_02145 -1.2 -6.8 potassium transporter KefA compare


Specific phenotypes for in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms