Experiment set34S670 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Genes with specific phenotypes:

  gene name fitness t score description  
PS417_10925 -5.1 -7.8 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
PS417_17510 -4.8 -9.5 histidine kinase compare
PS417_11870 -4.6 -11.6 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_11855 -4.3 -8.3 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
PS417_22845 -3.9 -22.2 membrane protein conserved
PS417_11890 -3.7 -6.8 Inositol transport system ATP-binding protein (from data) compare
PS417_11850 -3.5 -7.7 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
PS417_11895 -3.1 -6.7 Inositol transport system permease protein (from data) compare
PS417_09540 -2.5 -11.1 penicillin-binding protein 2 compare
PS417_26540 -2.4 -10.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_22125 -2.3 -10.3 porin compare
PS417_26000 -2.1 -7.4 8-amino-7-oxononanoate synthase compare
PS417_25750 -2.1 -10.1 polyamine ABC transporter substrate-binding protein conserved
PS417_22140 -1.9 -8.3 glucose/xylose ABC transporter, permease component 2 (from data) compare
PS417_25990 -1.9 -5.9 malonyl-CoA O-methyltransferase compare
PS417_12435 -1.7 -8.2 hypothetical protein compare
PS417_22135 -1.6 -6.1 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_06195 -1.5 -5.2 succinyldiaminopimelate aminotransferase compare
PS417_08345 -1.4 -6.9 chemotaxis protein compare
PS417_04105 -1.1 -7.3 ABC transporter ATP-binding protein compare
PS417_02145 -1.1 -5.4 potassium transporter KefA compare
PS417_00440 +1.2 6.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_22965 +1.5 8.8 DNA mismatch repair protein MutT compare
PS417_24680 +2.1 11.1 murein transglycosylase compare
PS417_19505 +2.3 5.6 2,4-diaminobutyrate 4-aminotransferase compare
PS417_19945 +2.8 10.2 MarR family transcriptional regulator compare


Specific phenotypes for in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms