Experiment set34S670 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_18595 -6.6 -3.7 3-isopropylmalate dehydratase compare
PS417_23805 -6.5 -4.5 acetolactate synthase 3 regulatory subunit compare
PS417_26740 -6.4 -4.4 homoserine acetyltransferase compare
PS417_23385 -5.6 -3.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_22850 -5.6 -8.2 virulence factor family protein compare
PS417_16005 -5.6 -3.1 ATPase compare
PS417_14065 -5.5 -5.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_18585 -5.5 -3.8 3-isopropylmalate dehydrogenase compare
PS417_04595 -5.4 -1.6 cell division protein MraZ compare
PS417_23800 -5.4 -10.3 ketol-acid reductoisomerase compare
PS417_02005 -5.3 -8.1 glutamate synthase compare
PS417_18600 -5.3 -3.5 isopropylmalate isomerase compare
PS417_10925 -5.1 -7.8 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
PS417_25720 -5.1 -7.6 anthranilate synthase component II compare
PS417_25725 -5.0 -9.7 anthranilate synthase component I compare
PS417_04420 -5.0 -9.6 histidinol dehydrogenase compare
PS417_23915 -4.8 -2.8 pantoate--beta-alanine ligase compare
PS417_17510 -4.8 -9.5 histidine kinase compare
PS417_23370 -4.8 -5.5 protoheme IX farnesyltransferase compare
PS417_10920 -4.7 -3.9 LysR family transcriptional regulator compare
PS417_11870 -4.6 -11.6 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_18530 -4.6 -5.3 O-succinylhomoserine sulfhydrylase compare
PS417_02000 -4.6 -7.0 glutamate synthase compare
PS417_27040 -4.5 -2.0 3-phosphoglycerate dehydrogenase compare
PS417_04415 -4.5 -9.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_26985 -4.5 -6.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_18560 -4.4 -5.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_11855 -4.3 -8.3 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
PS417_23380 -4.3 -2.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_23910 -4.3 -5.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_05595 -4.3 -10.5 ornithine carbamoyltransferase compare
PS417_25715 -4.3 -4.1 anthranilate phosphoribosyltransferase compare
PS417_00045 -4.3 -1.2 glycerol acyltransferase compare
PS417_27305 -4.2 -7.6 5-formyltetrahydrofolate cyclo-ligase compare
PS417_08540 -4.2 -1.7 RNA helicase compare
PS417_01575 -4.2 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_22780 -4.1 -3.4 XRE family transcriptional regulator compare
PS417_23810 -4.1 -9.4 acetolactate synthase 3 catalytic subunit compare
PS417_22845 -3.9 -22.2 membrane protein conserved
PS417_23390 -3.9 -8.5 ubiquinol oxidase subunit II compare
PS417_04275 -3.9 -11.7 hypothetical protein compare
PS417_18690 -3.9 -3.5 aromatic amino acid aminotransferase compare
PS417_26230 -3.9 -4.5 electron transfer flavoprotein subunit alpha compare
PS417_02975 -3.8 -2.2 3-dehydroquinate dehydratase compare
PS417_11865 -3.8 -2.2 xylose isomerase compare
PS417_11890 -3.7 -6.8 Inositol transport system ATP-binding protein (from data) compare
PS417_02415 -3.7 -4.3 phosphoserine phosphatase compare
PS417_26225 -3.7 -4.9 electron transfer flavoprotein subunit beta compare
PS417_11885 -3.6 -4.0 Inositol transport system sugar-binding protein (from data) compare
PS417_11850 -3.5 -7.7 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
PS417_11860 -3.5 -4.1 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
PS417_04270 -3.5 -9.9 ribonuclease G compare
PS417_26745 -3.5 -4.0 methionine biosynthesis protein MetW compare
PS417_21705 -3.5 -5.3 arginine N-succinyltransferase compare
PS417_24705 -3.5 -1.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_21480 -3.5 -1.6 23S rRNA pseudouridylate synthase compare
PS417_20160 -3.4 -4.6 cysteine synthase compare
PS417_02510 -3.3 -2.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23995 -3.2 -0.9 preprotein translocase subunit SecG compare
PS417_25985 -3.2 -2.0 dethiobiotin synthetase compare
PS417_01565 -3.2 -2.4 imidazole glycerol phosphate synthase compare
PS417_21630 -3.2 -2.2 magnesium transporter compare
PS417_23375 -3.2 -1.2 cytochrome C oxidase compare
PS417_21125 -3.1 -6.8 phosphoadenosine phosphosulfate reductase compare
PS417_11895 -3.1 -6.7 Inositol transport system permease protein (from data) compare
PS417_12290 -3.0 -8.5 sulfite reductase compare
PS417_23545 -3.0 -2.1 gamma-glutamyl kinase compare
PS417_01795 -2.9 -12.3 glucosyltransferase MdoH compare
PS417_25710 -2.9 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_27870 -2.9 -2.0 ATP-dependent DNA helicase RecG compare
PS417_16990 -2.9 -5.7 acyl-CoA dehydrogenase compare
PS417_01580 -2.9 -1.1 imidazole glycerol phosphate synthase compare
PS417_26235 -2.8 -5.5 (Fe-S)-binding protein compare
PS417_12695 -2.8 -5.1 mannitol dehydrogenase compare
PS417_20855 -2.8 -1.1 hypothetical protein compare
PS417_01855 -2.8 -2.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_11875 -2.8 -3.7 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_12805 -2.8 -11.8 glycogen branching protein compare
PS417_12855 -2.8 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13800 -2.8 -2.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_26890 -2.8 -4.1 dihydroxy-acid dehydratase compare
PS417_27445 -2.8 -8.3 membrane protein compare
PS417_01790 -2.8 -10.2 glucan biosynthesis protein G compare
PS417_01710 -2.7 -5.0 histidine utilization repressor compare
PS417_26005 -2.7 -8.0 biotin synthase compare
PS417_22620 -2.7 -3.8 pyruvate kinase compare
PS417_23950 -2.7 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_13795 -2.6 -8.2 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_04180 -2.6 -4.2 GntR family transcriptional regulator compare
PS417_01955 -2.6 -6.5 peptidase compare
PS417_12355 -2.5 -2.4 magnesium chelatase compare
PS417_09540 -2.5 -11.1 penicillin-binding protein 2 compare
PS417_22690 -2.5 -3.0 phosphogluconate dehydratase compare
PS417_07170 -2.5 -2.4 hypothetical protein compare
PS417_26540 -2.4 -10.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_24745 -2.4 -1.5 gamma-glutamyl phosphate reductase compare
PS417_27535 -2.4 -6.1 chemotaxis protein CheY compare
PS417_03310 -2.4 -7.3 carbonate dehydratase compare
PS417_28220 -2.4 -2.5 LysR family transcriptional regulator compare
PS417_11825 -2.3 -2.4 transcriptional regulator compare
PS417_28230 -2.3 -2.6 transcriptional regulator compare
PS417_22125 -2.3 -10.3 porin compare
PS417_22775 -2.3 -7.8 histidine kinase compare
PS417_17215 -2.3 -1.6 peptidylprolyl isomerase compare
PS417_28070 -2.3 -6.2 phosphate ABC transporter ATP-binding protein compare
PS417_23110 -2.3 -5.3 2-isopropylmalate synthase compare
PS417_01850 -2.3 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_28050 -2.3 -1.9 hypothetical protein compare
PS417_13805 -2.2 -8.0 4-amino-4-deoxy-L-arabinose transferase compare
PS417_28075 -2.2 -6.5 phosphate ABC transporter permease compare
PS417_16465 -2.2 -6.5 sirohydrochlorin ferrochelatase compare
PS417_26240 -2.2 -2.1 N-methylproline demethylase compare
PS417_16510 -2.2 -3.3 Clp protease ClpX compare
PS417_01095 -2.1 -1.4 amino acid ABC transporter ATP-binding protein compare
PS417_26000 -2.1 -7.4 8-amino-7-oxononanoate synthase compare
PS417_21515 -2.1 -13.4 transcriptional regulator compare
PS417_26695 -2.1 -0.8 uracil phosphoribosyltransferase compare
PS417_20775 -2.1 -2.4 coproporphyrinogen III oxidase compare
PS417_25750 -2.1 -10.1 polyamine ABC transporter substrate-binding protein conserved
PS417_20610 -2.1 -1.3 hypothetical protein compare
PS417_06710 -2.1 -1.8 beta-ketoadipyl CoA thiolase compare
PS417_08170 -2.1 -5.8 capsular biosynthesis protein compare
PS417_10985 -2.1 -1.0 NADH:flavin oxidoreductase compare
PS417_17515 -2.0 -2.6 GfdT protein compare
PS417_08665 -2.0 -4.0 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_13820 -2.0 -4.4 UDP-glucose 6-dehydrogenase compare
PS417_24835 -2.0 -5.6 hypothetical protein compare
PS417_20650 -2.0 -7.8 hypothetical protein compare
PS417_12005 -2.0 -2.0 hypothetical protein compare
PS417_06530 -1.9 -1.6 membrane protein compare
PS417_22140 -1.9 -8.3 glucose/xylose ABC transporter, permease component 2 (from data) compare
PS417_06780 -1.9 -2.7 TetR family transcriptional regulator compare
PS417_03465 -1.9 -1.5 type III secretion protein compare
PS417_09325 -1.9 -3.2 peptidase S41 compare
PS417_20115 -1.9 -3.6 hypothetical protein compare
PS417_22680 -1.9 -3.5 chemotaxis protein CheY compare
PS417_23900 -1.9 -5.9 poly(A) polymerase compare
PS417_17780 -1.9 -1.6 Ais protein compare
PS417_10265 -1.9 -2.2 peptidase compare
PS417_25990 -1.9 -5.9 malonyl-CoA O-methyltransferase compare
PS417_28080 -1.9 -9.2 phosphate ABC transporter permease compare
PS417_22130 -1.8 -3.5 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_11820 -1.8 -3.0 histidine kinase compare
PS417_22445 -1.8 -1.6 ATP-dependent DNA helicase RuvB compare
PS417_06375 -1.8 -0.5 deoxycytidine triphosphate deaminase compare
PS417_00175 -1.8 -1.2 CigR compare
PS417_14200 -1.8 -2.4 hypothetical protein compare
PS417_00705 -1.8 -1.4 MarR family transcriptional regulator compare
PS417_27195 -1.8 -0.6 N-acetylglutamate synthase compare
PS417_02680 -1.7 -3.7 hypothetical protein compare
PS417_24800 -1.7 -4.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_06895 -1.7 -3.2 DNA-binding protein compare
PS417_15935 -1.7 -2.5 Rrf2 family transcriptional regulator compare
PS417_27300 -1.7 -0.7 cell division protein ZapA compare
PS417_26250 -1.7 -3.6 peptidase M19 compare
PS417_19685 -1.7 -7.2 protein phosphatase compare
PS417_05555 -1.7 -3.6 amino acid ABC transporter permease compare
PS417_14755 -1.7 -1.6 UV damage repair endonuclease UvdE compare
PS417_07560 -1.7 -1.5 universal stress protein UspA compare
PS417_26995 -1.7 -6.0 phosphoserine phosphatase compare
PS417_07165 -1.7 -2.1 dihydrodipicolinate synthase compare
PS417_08580 -1.7 -5.2 histidine kinase compare
PS417_12435 -1.7 -8.2 hypothetical protein compare
PS417_20635 -1.7 -1.2 ABC transporter ATP-binding protein compare
PS417_15705 -1.6 -2.0 nitrate reductase compare
PS417_22520 -1.6 -0.9 histidine kinase compare
PS417_22135 -1.6 -6.1 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_08685 -1.6 -1.5 flagellar hook-length control protein FliK compare
PS417_22840 -1.6 -1.4 tRNA-Met compare
PS417_01570 -1.6 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_02720 -1.6 -0.7 TetR family transcriptional regulator compare
PS417_13870 -1.6 -2.4 hypothetical protein compare
PS417_00385 -1.6 -0.7 Fur family transcriptional regulator compare
PS417_17565 -1.6 -1.7 branched-chain amino acid aminotransferase compare
PS417_24935 -1.6 -0.8 hypothetical protein compare
PS417_04055 -1.6 -4.2 peptide transporter compare
PS417_13790 -1.6 -2.5 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_28185 -1.5 -2.4 homocysteine methyltransferase compare
PS417_26530 -1.5 -1.2 hypothetical protein compare
PS417_06195 -1.5 -5.2 succinyldiaminopimelate aminotransferase compare
PS417_11405 -1.5 -3.9 precorrin 6A synthase compare
PS417_07470 -1.5 -1.1 hypothetical protein compare
PS417_20130 -1.5 -4.6 dehydrogenase compare
PS417_18205 -1.5 -1.7 aldehyde dehydrogenase compare
PS417_24370 -1.5 -0.7 (2Fe-2S)-binding protein compare
PS417_25390 -1.5 -2.5 MFS transporter compare
PS417_06680 -1.5 -3.3 nuclease PIN compare
PS417_22565 -1.5 -0.4 formyltetrahydrofolate deformylase compare
PS417_12325 -1.5 -3.7 precorrin-4 C11-methyltransferase compare
PS417_19755 -1.5 -1.4 flagellar motor switch protein FliM compare
PS417_00370 -1.5 -0.7 hypothetical protein compare
PS417_05235 -1.5 -1.6 peptidase inhibitor I42 compare
PS417_04685 -1.5 -2.9 histidine kinase compare
PS417_11530 -1.5 -2.3 amidase compare
PS417_06500 -1.5 -1.4 hypothetical protein compare
PS417_05520 -1.5 -4.2 histidine kinase compare
PS417_05550 -1.4 -3.4 amino acid ABC transporter permease compare
PS417_08345 -1.4 -6.9 chemotaxis protein compare
PS417_26900 -1.4 -1.6 L-cystine transporter tcyP compare
PS417_02475 -1.4 -1.8 N-acetylmuramoyl-L-alanine amidase compare


Specific Phenotypes

For 26 genes in this experiment

For in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms