Experiment set34S670 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
PS417_07565 +3.2 3.6 hypothetical protein compare
PS417_19945 +2.8 10.2 MarR family transcriptional regulator compare
PS417_19505 +2.3 5.6 2,4-diaminobutyrate 4-aminotransferase compare
PS417_18355 +2.3 5.0 DNA-binding protein compare
PS417_04305 +2.2 2.2 aspartate ammonia-lyase compare
PS417_12110 +2.2 3.2 ATP-binding protein compare
PS417_24680 +2.1 11.1 murein transglycosylase compare
PS417_16855 +1.8 1.9 cation:proton antiporter compare
PS417_02820 +1.8 1.1 urea ABC transporter ATP-binding protein compare
PS417_00975 +1.6 2.7 hypothetical protein compare
PS417_03780 +1.6 1.8 general secretion pathway protein GspH compare
PS417_14185 +1.6 1.6 transcriptional regulator compare
PS417_00650 +1.5 1.3 LysR family transcriptional regulator compare
PS417_22965 +1.5 8.8 DNA mismatch repair protein MutT compare
PS417_15770 +1.5 2.1 pyridoxine 5'-phosphate oxidase compare
PS417_00995 +1.5 1.5 alpha/beta hydrolase compare
PS417_05560 +1.5 3.1 ABC transporter compare
PS417_16535 +1.5 1.7 NUDIX hydrolase compare
PS417_09460 +1.4 1.4 alkanesulfonate monooxygenase compare
PS417_07820 +1.4 2.6 transposase compare
PS417_05975 +1.4 0.7 chemotaxis protein CheW compare
PS417_27315 +1.4 1.5 hypothetical protein compare
PS417_18370 +1.4 1.7 hypothetical protein compare
PS417_14245 +1.3 2.0 hypothetical protein compare
PS417_08090 +1.3 1.1 3-oxoacyl-ACP reductase compare
PS417_19425 +1.3 1.6 allantoicase compare
PS417_26465 +1.3 3.2 hypothetical protein compare
PS417_04530 +1.3 3.0 glycerate dehydrogenase compare
PS417_12090 +1.3 1.3 hypothetical protein compare
PS417_16195 +1.3 1.4 AraC family transcriptional regulator compare
PS417_11945 +1.3 2.3 hypothetical protein compare
PS417_01825 +1.3 2.1 chemotaxis protein compare
PS417_00755 +1.3 0.9 biofilm PGA synthesis protein PgaD compare
PS417_19065 +1.3 1.3 monooxygenase compare
PS417_24430 +1.2 1.8 3-dehydroquinate dehydratase compare
PS417_00440 +1.2 6.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_00535 +1.2 2.8 Holliday junction resolvase compare
PS417_07770 +1.2 2.3 hypothetical protein compare
PS417_27200 +1.2 2.2 acetylornithine deacetylase compare
PS417_20980 +1.2 3.4 uroporphyrin-III methyltransferase compare
PS417_13455 +1.2 1.2 alkaline proteinase inhibitor compare
PS417_13735 +1.2 1.1 hypothetical protein compare
PS417_10405 +1.2 1.3 filamentous hemagglutinin compare
PS417_07870 +1.2 1.3 hypothetical protein compare
PS417_25950 +1.2 2.3 acetylornithine aminotransferase compare
PS417_03080 +1.2 2.3 hypothetical protein compare
PS417_21090 +1.2 2.2 hypothetical protein compare
PS417_06970 +1.2 1.5 LysR family transcriptional regulator compare
PS417_22300 +1.1 1.6 LTXXQ domain protein compare
PS417_04375 +1.1 1.0 ABC transporter ATP-binding protein compare
PS417_01645 +1.1 1.5 cupin compare
PS417_11755 +1.1 1.8 diacetyl reductase compare
PS417_19935 +1.1 4.0 hypothetical protein compare
PS417_21700 +1.1 2.8 arginine N-succinyltransferase compare
PS417_27180 +1.1 1.3 peroxidase compare
PS417_16270 +1.1 2.5 hypothetical protein compare
PS417_16715 +1.0 1.3 DoxX family protein compare
PS417_10040 +1.0 1.1 MFS transporter compare
PS417_02255 +1.0 1.7 lipopolysaccharide kinase compare
PS417_09800 +1.0 2.0 cytosine deaminase compare
PS417_23500 +1.0 2.5 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
PS417_06370 +1.0 0.8 cold-shock protein compare
PS417_02210 +1.0 5.1 diguanylate cyclase compare
PS417_05730 +1.0 1.7 tail protein compare
PS417_03450 +1.0 1.2 RNA polymerase sigma factor compare
PS417_01920 +1.0 0.6 ATP-dependent protease subunit HslV compare
PS417_07245 +1.0 1.6 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_21425 +1.0 1.8 4-amino-4-deoxychorismate lyase compare
PS417_13785 +1.0 2.2 hypothetical protein compare
PS417_00065 +1.0 0.8 3-methyladenine DNA glycosylase compare
PS417_13145 +1.0 2.1 50S ribosomal protein L21 compare
PS417_07620 +1.0 0.6 beta-hexosaminidase compare
PS417_24225 +0.9 1.5 hypothetical protein compare
PS417_18230 +0.9 2.6 amidase compare
PS417_18570 +0.9 2.7 peptidoglycan-binding protein compare
PS417_03090 +0.9 1.4 type II secretion system protein F compare
PS417_05535 +0.9 1.0 Fis family transcriptional regulator compare
PS417_18980 +0.9 1.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_03675 +0.9 3.9 hypothetical protein compare
PS417_25635 +0.9 4.0 biotin--protein ligase compare
PS417_11125 +0.9 1.1 hypothetical protein compare
PS417_15955 +0.9 2.9 secretion protein HylD compare
PS417_22270 +0.9 2.0 hypothetical protein compare
PS417_10665 +0.9 1.8 hypothetical protein compare
PS417_00550 +0.9 0.9 hypothetical protein compare
PS417_10600 +0.9 2.0 hypothetical protein compare
PS417_10930 +0.9 2.7 D-xylose ABC transporter permease compare
PS417_20310 +0.9 2.4 hypothetical protein compare
PS417_10015 +0.9 1.1 hypothetical protein compare
PS417_01005 +0.9 2.3 methionine ABC transporter substrate-binding protein compare
PS417_16160 +0.9 1.7 ABC transporter substrate-binding protein compare
PS417_17375 +0.9 2.9 C4-dicarboxylate ABC transporter compare
PS417_11080 +0.9 2.5 dehydrogenase compare
PS417_21655 +0.9 0.7 aspartate kinase compare
PS417_02425 +0.9 2.2 thiosulfate sulfurtransferase compare
PS417_26060 +0.9 1.4 DNA polymerase III subunit epsilon compare
PS417_03670 +0.9 1.9 MerR family transcriptional regulator compare
PS417_10565 +0.9 3.0 LysR family transcriptional regulator compare
PS417_11670 +0.9 0.7 multidrug transporter MATE compare
PS417_23755 +0.8 1.6 membrane protein compare
PS417_02070 +0.8 0.9 membrane protein compare
PS417_22805 +0.8 5.4 hypothetical protein compare
PS417_02770 +0.8 1.3 membrane protein compare
PS417_10560 +0.8 3.9 choline dehydrogenase compare
PS417_04915 +0.8 0.9 glutamine ABC transporter ATP-binding protein compare
PS417_17405 +0.8 1.3 AraC family transcriptional regulator compare
PS417_22385 +0.8 4.6 quinolinate synthase A compare
PS417_04080 +0.8 1.6 peptide ABC transporter substrate-binding protein compare
PS417_14600 +0.8 1.6 bleomycin resistance protein compare
PS417_12565 +0.8 0.9 2-dehydro-3-deoxygluconokinase compare
PS417_22040 +0.8 2.1 GNAT family acetyltransferase compare
PS417_26445 +0.8 2.2 ArsR family transcriptional regulator compare
PS417_05140 +0.8 1.5 dipicolinate synthase compare
PS417_20480 +0.8 1.2 hypothetical protein compare
PS417_25915 +0.8 2.1 carbon-nitrogen hydrolase compare
PS417_04990 +0.8 1.6 GIY-YIG nuclease compare
PS417_01290 +0.8 1.1 ADP-ribose diphosphatase compare
PS417_11175 +0.8 0.8 AraC family transcriptional regulator compare
PS417_06140 +0.8 2.2 cold-shock protein compare
PS417_19825 +0.8 5.3 ATPase AAA compare
PS417_17330 +0.8 2.4 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_05410 +0.8 2.8 membrane protein compare
PS417_04735 +0.8 3.5 LysR family transcriptional regulator compare
PS417_18630 +0.8 1.0 tRNA-dihydrouridine synthase C compare
PS417_21420 +0.8 4.9 aminodeoxychorismate lyase compare
PS417_13290 +0.8 1.2 AraC family transcriptional regulator compare
PS417_02430 +0.8 2.6 histidine kinase compare
PS417_04215 +0.8 2.2 malate transporter compare
PS417_19055 +0.8 1.7 ArsR family transcriptional regulator compare
PS417_04920 +0.8 1.0 GntR family transcriptional regulator compare
PS417_21730 +0.8 2.5 peptidase M14 compare
PS417_01900 +0.8 3.0 poly(3-hydroxyalkanoate) depolymerase compare
PS417_26305 +0.8 1.2 AraC family transcriptional regulator compare
PS417_06145 +0.8 0.7 hypothetical protein compare
PS417_11415 +0.8 1.1 hypothetical protein compare
PS417_08930 +0.7 1.2 hypothetical protein compare
PS417_14760 +0.7 2.0 membrane protein compare
PS417_02385 +0.7 0.6 esterase compare
PS417_07015 +0.7 1.2 helicase compare
PS417_28265 +0.7 1.0 pyridoxamine kinase compare
PS417_15005 +0.7 1.8 hypothetical protein compare
PS417_09770 +0.7 2.2 MFS transporter compare
PS417_12865 +0.7 2.0 chloride channel protein compare
PS417_18375 +0.7 2.6 hypothetical protein compare
PS417_05710 +0.7 1.1 hypothetical protein compare
PS417_04895 +0.7 2.6 carboxylesterase compare
PS417_10605 +0.7 2.8 LuxR family transcriptional regulator compare
PS417_16060 +0.7 1.7 protein tolQ compare
PS417_23535 +0.7 2.4 glutathione peroxidase compare
PS417_26365 +0.7 1.3 EmrB/QacA subfamily drug resistance transporter compare
PS417_23080 +0.7 1.5 sugar ABC transporter ATPase compare
PS417_06705 +0.7 1.4 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) compare
PS417_15525 +0.7 2.8 AraC family transcriptional regulator compare
PS417_15470 +0.7 2.7 saccharopine dehydrogenase compare
PS417_24715 +0.7 2.8 lytic transglycosylase compare
PS417_08360 +0.7 1.1 DoxX family protein compare
PS417_03655 +0.7 1.7 short-chain dehydrogenase compare
PS417_11720 +0.7 3.2 class V aminotransferase compare
PS417_06675 +0.7 1.0 ATP-dependent helicase compare
PS417_02155 +0.7 2.4 chemotaxis protein compare
PS417_07000 +0.7 1.2 hypothetical protein compare
PS417_00565 +0.7 1.3 NAD(P) transhydrogenase compare
PS417_13640 +0.7 1.3 ribose ABC transporter permease compare
PS417_13165 +0.7 0.6 peroxidase compare
PS417_24600 +0.7 2.7 hydrogenase compare
PS417_07985 +0.7 1.0 AbrB family transcriptional regulator compare
PS417_17805 +0.7 1.1 microcin B17 processing protein McbC compare
PS417_07380 +0.7 1.1 hypothetical protein compare
PS417_11935 +0.7 2.8 ABC transporter substrate-binding protein compare
PS417_00830 +0.7 1.8 hypothetical protein compare
PS417_20205 +0.7 1.5 LysR family transcriptional regulator compare
PS417_10055 +0.7 1.2 hypothetical protein compare
PS417_06345 +0.7 1.8 pseudouridine synthase compare
PS417_05325 +0.7 1.1 fimbrial protein compare
PS417_02100 +0.7 3.2 membrane protein compare
PS417_02845 +0.7 1.9 ABC transporter permease compare
PS417_15465 +0.7 1.9 carboxynorspermidine decarboxylase compare
PS417_09680 +0.7 1.1 hydrolase compare
PS417_02360 +0.7 1.4 nitrate reductase compare
PS417_19590 +0.7 2.0 enoyl-CoA hydratase compare
PS417_27500 +0.7 2.1 peptidylprolyl isomerase compare
PS417_19965 +0.7 3.3 histidine kinase compare
PS417_27675 +0.7 1.3 xanthine phosphoribosyltransferase compare
PS417_27815 +0.6 0.8 hypothetical protein compare
PS417_05065 +0.6 1.0 hypothetical protein compare
PS417_20725 +0.6 0.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_23485 +0.6 1.7 antibiotic biosynthesis monooxygenase compare
PS417_12545 +0.6 2.1 xanthine permease XanP compare
PS417_17240 +0.6 1.2 trigger factor compare
PS417_27285 +0.6 4.0 Xaa-Pro aminopeptidase compare
PS417_09245 +0.6 1.0 recombinase RdgC compare
PS417_07640 +0.6 1.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_11200 +0.6 1.8 membrane protein compare
PS417_13425 +0.6 1.2 cupin compare
PS417_22370 +0.6 2.6 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
PS417_08135 +0.6 1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21110 +0.6 3.0 hypothetical protein compare
PS417_02080 +0.6 1.6 histidine ammonia-lyase compare
PS417_09340 +0.6 1.4 spermidine/putrescine ABC transporter ATP-binding protein compare
PS417_13660 +0.6 0.7 AsnC family transcriptional regulator compare


Specific Phenotypes

For 26 genes in this experiment

For in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms