Experiment set34S669 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Genes with specific phenotypes:

  gene name fitness t score description  
PS417_17510 -4.0 -15.9 histidine kinase compare
PS417_10925 -3.7 -9.0 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
PS417_11850 -3.6 -7.4 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
PS417_11855 -3.2 -7.5 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
PS417_11890 -3.2 -9.2 Inositol transport system ATP-binding protein (from data) compare
PS417_11895 -3.1 -9.5 Inositol transport system permease protein (from data) compare
PS417_11875 -2.7 -6.2 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_22125 -2.4 -10.9 porin conserved
PS417_11870 -2.3 -6.7 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_22845 -2.3 -13.6 membrane protein conserved
PS417_25990 -2.2 -5.2 malonyl-CoA O-methyltransferase compare
PS417_22135 -1.8 -6.2 glucose/xylose ABC transporter, permease component 1 (from data) conserved
PS417_22145 -1.7 -7.7 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) conserved
PS417_09540 -1.6 -8.3 penicillin-binding protein 2 compare
PS417_26000 -1.6 -5.8 8-amino-7-oxononanoate synthase compare
PS417_06195 -1.5 -5.8 succinyldiaminopimelate aminotransferase compare
PS417_26540 -1.5 -7.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_12435 -1.5 -6.9 hypothetical protein compare
PS417_22140 -1.5 -6.4 glucose/xylose ABC transporter, permease component 2 (from data) conserved
PS417_20035 -1.2 -5.7 adenosylcobinamide kinase compare
PS417_22685 -1.1 -6.9 Glucokinase (EC 2.7.1.2) (from data) compare
PS417_25750 -1.1 -5.7 polyamine ABC transporter substrate-binding protein conserved
PS417_13825 -1.0 -5.8 glycosyltransferase compare
PS417_22965 +1.4 8.1 DNA mismatch repair protein MutT compare


Specific phenotypes for in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms