Experiment set34S669 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_25720 -6.7 -4.6 anthranilate synthase component II compare
PS417_18600 -6.5 -3.1 isopropylmalate isomerase compare
PS417_01575 -6.5 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26740 -6.4 -6.2 homoserine acetyltransferase compare
PS417_23805 -6.1 -5.1 acetolactate synthase 3 regulatory subunit compare
PS417_23800 -5.9 -7.1 ketol-acid reductoisomerase compare
PS417_18595 -5.9 -4.4 3-isopropylmalate dehydratase compare
PS417_14065 -5.8 -5.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_18585 -5.1 -4.9 3-isopropylmalate dehydrogenase compare
PS417_23915 -4.9 -2.8 pantoate--beta-alanine ligase compare
PS417_02005 -4.9 -11.0 glutamate synthase compare
PS417_23910 -4.8 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_25725 -4.7 -12.4 anthranilate synthase component I compare
PS417_18560 -4.7 -5.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27040 -4.6 -2.0 3-phosphoglycerate dehydrogenase compare
PS417_23380 -4.5 -2.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_04420 -4.4 -11.2 histidinol dehydrogenase compare
PS417_23385 -4.3 -8.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_23810 -4.3 -10.3 acetolactate synthase 3 catalytic subunit compare
PS417_01560 -4.2 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_18530 -4.2 -4.4 O-succinylhomoserine sulfhydrylase compare
PS417_26745 -4.1 -4.9 methionine biosynthesis protein MetW compare
PS417_13800 -4.1 -3.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_01710 -4.0 -4.9 histidine utilization repressor compare
PS417_17510 -4.0 -15.9 histidine kinase compare
PS417_02510 -4.0 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02000 -4.0 -11.6 glutamate synthase compare
PS417_01855 -3.9 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_23545 -3.9 -2.1 gamma-glutamyl kinase compare
PS417_26850 -3.8 -1.0 twin-arginine translocation pathway signal protein compare
PS417_26985 -3.8 -6.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_10925 -3.7 -9.0 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
PS417_23390 -3.7 -8.5 ubiquinol oxidase subunit II compare
PS417_04415 -3.6 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_11850 -3.6 -7.4 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
PS417_16005 -3.6 -3.6 ATPase compare
PS417_07560 -3.6 -1.7 universal stress protein UspA compare
PS417_10920 -3.5 -3.8 LysR family transcriptional regulator compare
PS417_01565 -3.5 -4.4 imidazole glycerol phosphate synthase compare
PS417_26890 -3.4 -5.6 dihydroxy-acid dehydratase compare
PS417_23995 -3.3 -0.9 preprotein translocase subunit SecG compare
PS417_23375 -3.3 -1.3 cytochrome C oxidase compare
PS417_02415 -3.3 -5.5 phosphoserine phosphatase compare
PS417_11855 -3.2 -7.5 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
PS417_04275 -3.2 -13.2 hypothetical protein compare
PS417_11890 -3.2 -9.2 Inositol transport system ATP-binding protein (from data) compare
PS417_27305 -3.1 -10.8 5-formyltetrahydrofolate cyclo-ligase compare
PS417_11895 -3.1 -9.5 Inositol transport system permease protein (from data) compare
PS417_23370 -3.1 -4.3 protoheme IX farnesyltransferase compare
PS417_25710 -3.0 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_27870 -3.0 -2.0 ATP-dependent DNA helicase RecG compare
PS417_01580 -2.9 -1.1 imidazole glycerol phosphate synthase compare
PS417_26005 -2.9 -10.4 biotin synthase compare
PS417_05595 -2.9 -5.8 ornithine carbamoyltransferase compare
PS417_22775 -2.8 -8.6 histidine kinase compare
PS417_02895 -2.8 -2.4 precorrin-6Y C5,15-methyltransferase compare
PS417_22780 -2.8 -2.5 XRE family transcriptional regulator compare
PS417_22850 -2.8 -9.1 virulence factor family protein compare
PS417_11875 -2.7 -6.2 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_11885 -2.7 -3.7 Inositol transport system sugar-binding protein (from data) compare
PS417_04270 -2.6 -9.7 ribonuclease G compare
PS417_02975 -2.6 -4.0 3-dehydroquinate dehydratase compare
PS417_08685 -2.6 -1.7 flagellar hook-length control protein FliK compare
PS417_26230 -2.6 -3.6 electron transfer flavoprotein subunit alpha compare
PS417_05815 -2.6 -4.1 recombinase RecA compare
PS417_01795 -2.6 -12.3 glucosyltransferase MdoH compare
PS417_11860 -2.6 -4.6 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
PS417_04595 -2.6 -1.7 cell division protein MraZ compare
PS417_26235 -2.6 -5.9 (Fe-S)-binding protein compare
PS417_28050 -2.6 -1.6 hypothetical protein compare
PS417_01570 -2.5 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_21125 -2.5 -9.4 phosphoadenosine phosphosulfate reductase compare
PS417_06600 -2.5 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_13805 -2.5 -11.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_22125 -2.4 -10.9 porin conserved
PS417_21480 -2.4 -1.5 23S rRNA pseudouridylate synthase compare
PS417_20610 -2.4 -1.6 hypothetical protein compare
PS417_25715 -2.4 -3.8 anthranilate phosphoribosyltransferase compare
PS417_08540 -2.4 -1.7 RNA helicase compare
PS417_17215 -2.4 -1.6 peptidylprolyl isomerase compare
PS417_25985 -2.4 -2.0 dethiobiotin synthetase compare
PS417_06245 -2.4 -1.8 zinc metallopeptidase RseP compare
PS417_28070 -2.4 -6.2 phosphate ABC transporter ATP-binding protein compare
PS417_11870 -2.3 -6.7 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_27135 -2.3 -0.6 glutamine synthetase compare
PS417_27445 -2.3 -10.7 membrane protein compare
PS417_22845 -2.3 -13.6 membrane protein conserved
PS417_13820 -2.3 -7.4 UDP-glucose 6-dehydrogenase compare
PS417_20775 -2.2 -2.6 coproporphyrinogen III oxidase compare
PS417_11865 -2.2 -3.9 xylose isomerase compare
PS417_10275 -2.2 -2.4 histidine kinase compare
PS417_18690 -2.2 -4.0 aromatic amino acid aminotransferase compare
PS417_25990 -2.2 -5.2 malonyl-CoA O-methyltransferase compare
PS417_16510 -2.2 -3.5 Clp protease ClpX compare
PS417_24745 -2.2 -2.2 gamma-glutamyl phosphate reductase compare
PS417_13795 -2.2 -7.3 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_25390 -2.1 -3.0 MFS transporter compare
PS417_17565 -2.1 -2.7 branched-chain amino acid aminotransferase compare
PS417_21705 -2.1 -3.6 arginine N-succinyltransferase compare
PS417_03560 -2.1 -1.1 GTP-binding protein compare
PS417_16490 -2.0 -1.1 cell division protein FtsK compare
PS417_21630 -2.0 -2.3 magnesium transporter compare
PS417_22690 -2.0 -2.5 phosphogluconate dehydratase compare
PS417_08170 -2.0 -6.6 capsular biosynthesis protein compare
PS417_19415 -2.0 -3.1 allantoinase compare
PS417_01850 -2.0 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18390 -2.0 -6.1 LacI family transcriptional regulator compare
PS417_22130 -2.0 -3.7 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_23025 -2.0 -5.1 murein transglycosylase compare
PS417_02385 -1.9 -1.6 esterase compare
PS417_10675 -1.9 -1.0 TetR family transcriptional regulator compare
PS417_01790 -1.9 -6.6 glucan biosynthesis protein G compare
PS417_06375 -1.9 -0.5 deoxycytidine triphosphate deaminase compare
PS417_09235 -1.9 -1.0 molecular chaperone compare
PS417_08245 -1.9 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27300 -1.9 -0.7 cell division protein ZapA compare
PS417_23110 -1.9 -4.7 2-isopropylmalate synthase compare
PS417_20130 -1.9 -8.8 dehydrogenase compare
PS417_02270 -1.8 -4.0 carbamoyltransferase compare
PS417_12805 -1.8 -6.8 glycogen branching protein compare
PS417_28075 -1.8 -9.2 phosphate ABC transporter permease compare
PS417_22620 -1.8 -4.0 pyruvate kinase compare
PS417_17780 -1.8 -1.6 Ais protein compare
PS417_22135 -1.8 -6.2 glucose/xylose ABC transporter, permease component 1 (from data) conserved
PS417_27195 -1.8 -0.6 N-acetylglutamate synthase compare
PS417_13790 -1.8 -4.5 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_21575 -1.8 -5.7 chemotaxis protein compare
PS417_21515 -1.8 -9.4 transcriptional regulator compare
PS417_19675 -1.8 -3.8 chemotaxis protein CheY compare
PS417_07170 -1.8 -3.1 hypothetical protein compare
PS417_26995 -1.8 -5.4 phosphoserine phosphatase compare
PS417_10995 -1.7 -2.8 GntR family transcriptional regulator compare
PS417_28230 -1.7 -2.0 transcriptional regulator compare
PS417_22145 -1.7 -7.7 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) conserved
PS417_09300 -1.7 -2.9 peptidylprolyl isomerase compare
PS417_28220 -1.7 -2.5 LysR family transcriptional regulator compare
PS417_28080 -1.7 -9.7 phosphate ABC transporter permease compare
PS417_04875 -1.6 -0.9 molybdenum cofactor biosynthesis protein MoaE compare
PS417_09540 -1.6 -8.3 penicillin-binding protein 2 compare
PS417_23580 -1.6 -1.2 peptidylprolyl isomerase compare
PS417_03300 -1.6 -2.3 alanine acetyltransferase compare
PS417_26000 -1.6 -5.8 8-amino-7-oxononanoate synthase compare
PS417_16990 -1.6 -3.2 acyl-CoA dehydrogenase compare
PS417_20025 -1.6 -1.4 alpha-ribazole phosphatase compare
PS417_21830 -1.6 -3.2 TetR family transcriptional regulator compare
PS417_01955 -1.6 -5.9 peptidase compare
PS417_19095 -1.6 -1.8 hypothetical protein compare
PS417_26225 -1.5 -2.7 electron transfer flavoprotein subunit beta compare
PS417_22570 -1.5 -0.5 H-NS histone compare
PS417_26420 -1.5 -1.2 hypothetical protein compare
PS417_06195 -1.5 -5.8 succinyldiaminopimelate aminotransferase compare
PS417_05535 -1.5 -1.6 Fis family transcriptional regulator compare
PS417_26540 -1.5 -7.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_26175 -1.5 -1.0 sarcosine oxidase subunit gamma compare
PS417_07165 -1.5 -2.4 dihydrodipicolinate synthase compare
PS417_23900 -1.5 -5.5 poly(A) polymerase compare
PS417_22450 -1.5 -0.7 ATP-dependent DNA helicase RuvA compare
PS417_04340 -1.5 -4.4 ribosome hibernation promoting factor HPF compare
PS417_12435 -1.5 -6.9 hypothetical protein compare
PS417_20160 -1.5 -3.0 cysteine synthase compare
PS417_22140 -1.5 -6.4 glucose/xylose ABC transporter, permease component 2 (from data) conserved
PS417_06635 -1.4 -1.0 ferredoxin compare
PS417_26250 -1.4 -4.0 peptidase M19 conserved
PS417_20715 -1.4 -1.0 cytochrome Cbb3 compare
PS417_20705 -1.4 -1.4 cbb3-type cytochrome c oxidase subunit II compare
PS417_24835 -1.4 -3.2 hypothetical protein compare
PS417_08590 -1.4 -1.7 hypothetical protein compare
PS417_03310 -1.4 -5.8 carbonate dehydratase compare
PS417_03965 -1.4 -4.3 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_19850 -1.4 -6.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_26695 -1.4 -0.6 uracil phosphoribosyltransferase compare
PS417_27535 -1.4 -4.1 chemotaxis protein CheY compare
PS417_00185 -1.4 -0.9 tryptophan synthase subunit beta compare
PS417_18425 -1.4 -1.3 sporulation protein compare
PS417_08205 -1.4 -2.3 acetyltransferase compare
PS417_08335 -1.3 -1.9 hypothetical protein compare
PS417_20785 -1.3 -0.8 transcriptional regulator compare
PS417_12855 -1.3 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20635 -1.3 -1.1 ABC transporter ATP-binding protein compare
PS417_27155 -1.3 -1.2 aliphatic sulfonates transport ATP-binding subunit compare
PS417_08545 -1.3 -1.7 aromatic ring-opening dioxygenase LigB compare
PS417_21430 -1.3 -0.8 3-oxoacyl-ACP synthase compare
PS417_05200 -1.3 -2.4 DNA recombination protein RecO compare
PS417_06330 -1.3 -3.7 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_13305 -1.3 -1.3 hypothetical protein compare
PS417_26240 -1.3 -1.9 N-methylproline demethylase compare
PS417_05865 -1.3 -1.5 hypothetical protein compare
PS417_04050 -1.3 -1.9 peptide ABC transporter ATP-binding protein compare
PS417_24800 -1.3 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_27640 -1.2 -0.5 TetR family transcriptional regulator compare
PS417_24710 -1.2 -3.8 lipoprotein compare
PS417_12355 -1.2 -1.2 magnesium chelatase compare
PS417_24705 -1.2 -1.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_23830 -1.2 -6.6 hypothetical protein compare
PS417_05905 -1.2 -1.8 hypothetical protein compare
PS417_00155 -1.2 -3.5 2-dehydro-3-deoxygalactonokinase compare
PS417_14315 -1.2 -2.1 2,5-dioxovalerate dehydrogenase compare
PS417_00345 -1.2 -1.5 copper-binding protein compare
PS417_25650 -1.2 -1.4 anhydro-N-acetylmuramic acid kinase compare
PS417_04055 -1.2 -3.1 peptide transporter compare


Specific Phenotypes

For 24 genes in this experiment

For in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms