Experiment set34S667 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Genes with specific phenotypes:

  gene name fitness t score description  
PS417_11890 -4.7 -7.5 Inositol transport system ATP-binding protein (from data) compare
PS417_11855 -4.4 -6.2 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
PS417_11870 -4.4 -12.1 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_17510 -4.4 -14.0 histidine kinase compare
PS417_11860 -4.4 -6.7 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
PS417_11875 -4.4 -5.2 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_11850 -4.0 -9.2 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
PS417_11895 -4.0 -11.4 Inositol transport system permease protein (from data) compare
PS417_10925 -3.5 -6.7 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
PS417_22845 -2.9 -17.4 membrane protein conserved
PS417_26225 -2.8 -5.1 electron transfer flavoprotein subunit beta compare
PS417_26250 -2.1 -5.4 peptidase M19 conserved
PS417_26000 -2.0 -6.3 8-amino-7-oxononanoate synthase compare
PS417_22125 -1.7 -9.8 porin conserved
PS417_09540 -1.7 -9.4 penicillin-binding protein 2 compare
PS417_26540 -1.7 -8.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_06195 -1.6 -5.7 succinyldiaminopimelate aminotransferase compare
PS417_22135 -1.5 -7.2 glucose/xylose ABC transporter, permease component 1 (from data) conserved
PS417_22140 -1.4 -7.3 glucose/xylose ABC transporter, permease component 2 (from data) conserved
PS417_23410 -1.3 -5.1 membrane protein compare
PS417_22360 -1.2 -5.4 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) compare
PS417_02145 -1.1 -5.7 potassium transporter KefA compare
PS417_12435 -1.0 -6.4 hypothetical protein compare
PS417_24680 +1.3 9.2 murein transglycosylase compare
PS417_09670 +1.6 6.2 AraC family transcriptional regulator compare
PS417_22965 +1.6 6.6 DNA mismatch repair protein MutT compare


Specific phenotypes for in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms