Experiment set34S664 for Pseudomonas simiae WCS417

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Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_18595 -6.6 -4.1 3-isopropylmalate dehydratase compare
PS417_26740 -6.4 -6.3 homoserine acetyltransferase compare
PS417_27040 -6.2 -3.3 3-phosphoglycerate dehydrogenase compare
PS417_16990 -5.9 -7.0 acyl-CoA dehydrogenase compare
PS417_23805 -5.7 -5.5 acetolactate synthase 3 regulatory subunit compare
PS417_02510 -5.6 -3.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23800 -5.5 -10.0 ketol-acid reductoisomerase compare
PS417_23915 -5.4 -3.7 pantoate--beta-alanine ligase compare
PS417_01575 -5.3 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25725 -5.2 -13.3 anthranilate synthase component I compare
PS417_18585 -4.8 -4.7 3-isopropylmalate dehydrogenase compare
PS417_26745 -4.7 -4.6 methionine biosynthesis protein MetW compare
PS417_25720 -4.5 -7.2 anthranilate synthase component II compare
PS417_18560 -4.5 -6.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27435 -4.3 -7.0 polyphosphate kinase compare
PS417_18530 -4.2 -4.7 O-succinylhomoserine sulfhydrylase compare
PS417_01560 -4.2 -2.9 imidazoleglycerol-phosphate dehydratase compare
PS417_23810 -4.0 -9.3 acetolactate synthase 3 catalytic subunit compare
PS417_26890 -4.0 -6.8 dihydroxy-acid dehydratase compare
PS417_14065 -4.0 -13.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_04420 -3.9 -10.0 histidinol dehydrogenase compare
PS417_02005 -3.8 -12.4 glutamate synthase compare
PS417_18600 -3.8 -3.9 isopropylmalate isomerase compare
PS417_04415 -3.8 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_05595 -3.7 -10.2 ornithine carbamoyltransferase compare
PS417_23545 -3.5 -2.3 gamma-glutamyl kinase compare
PS417_01565 -3.5 -3.8 imidazole glycerol phosphate synthase compare
PS417_24710 -3.4 -7.2 lipoprotein compare
PS417_03310 -3.4 -5.3 carbonate dehydratase compare
PS417_02415 -3.3 -3.6 phosphoserine phosphatase compare
PS417_06245 -3.2 -2.1 zinc metallopeptidase RseP compare
PS417_24745 -3.2 -2.2 gamma-glutamyl phosphate reductase compare
PS417_12840 -3.2 -4.0 TetR family transcriptional regulator compare
PS417_16005 -3.0 -3.0 ATPase compare
PS417_04170 -3.0 -3.8 stringent starvation protein A compare
PS417_12855 -3.0 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01855 -2.9 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_27835 -2.8 -8.2 endoribonuclease compare
PS417_02000 -2.7 -13.3 glutamate synthase compare
PS417_01580 -2.7 -1.1 imidazole glycerol phosphate synthase compare
PS417_07560 -2.7 -1.4 universal stress protein UspA compare
PS417_03830 -2.7 -10.1 protein disaggregation chaperone compare
PS417_05570 -2.7 -4.1 DeoR faimly transcriptional regulator compare
PS417_22690 -2.6 -3.3 phosphogluconate dehydratase compare
PS417_27195 -2.6 -1.2 N-acetylglutamate synthase compare
PS417_01570 -2.5 -3.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_25715 -2.4 -4.9 anthranilate phosphoribosyltransferase compare
PS417_13075 -2.4 -2.2 hypothetical protein compare
PS417_01850 -2.4 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27135 -2.4 -0.8 glutamine synthetase compare
PS417_04270 -2.3 -6.2 ribonuclease G compare
PS417_07170 -2.2 -3.6 hypothetical protein compare
PS417_27305 -2.2 -8.6 5-formyltetrahydrofolate cyclo-ligase compare
PS417_28050 -2.2 -3.3 hypothetical protein compare
PS417_21630 -2.1 -2.4 magnesium transporter compare
PS417_02975 -2.1 -2.7 3-dehydroquinate dehydratase compare
PS417_05975 -2.1 -0.9 chemotaxis protein CheW compare
PS417_12555 -2.1 -10.8 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_25650 -2.1 -2.4 anhydro-N-acetylmuramic acid kinase compare
PS417_06375 -2.1 -0.6 deoxycytidine triphosphate deaminase compare
PS417_22815 -2.0 -2.0 permease compare
PS417_06530 -2.0 -1.9 membrane protein compare
PS417_23110 -2.0 -4.0 2-isopropylmalate synthase compare
PS417_13510 -2.0 -1.4 polyketide cyclase compare
PS417_26995 -2.0 -6.6 phosphoserine phosphatase compare
PS417_27870 -1.9 -2.5 ATP-dependent DNA helicase RecG compare
PS417_04365 -1.9 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27110 -1.9 -4.9 spermidine/putrescine ABC transporter permease compare
PS417_23995 -1.9 -1.0 preprotein translocase subunit SecG compare
PS417_02630 -1.9 -3.5 NAD synthetase compare
PS417_24500 -1.9 -3.0 DEAD/DEAH box helicase compare
PS417_19350 -1.9 -4.3 GTP cyclohydrolase compare
PS417_25830 -1.9 -10.3 serine/threonine protein kinase conserved
PS417_25840 -1.9 -10.2 SpoVR family protein compare
PS417_27105 -1.9 -4.6 spermidine/putrescine ABC transporter permease compare
PS417_28220 -1.9 -2.6 LysR family transcriptional regulator compare
PS417_20125 -1.9 -4.3 phosphoribosylglycinamide formyltransferase compare
PS417_07620 -1.8 -0.8 beta-hexosaminidase compare
PS417_23095 -1.8 -1.2 exodeoxyribonuclease compare
PS417_08945 -1.8 -7.1 heat shock protein 90 compare
PS417_25790 -1.8 -3.1 aminoglycoside phosphotransferase compare
PS417_08170 -1.8 -5.8 capsular biosynthesis protein compare
PS417_20130 -1.8 -7.6 dehydrogenase compare
PS417_00405 -1.8 -6.0 DNA polymerase I compare
PS417_25835 -1.8 -7.5 hypothetical protein compare
PS417_17565 -1.8 -2.7 branched-chain amino acid aminotransferase compare
PS417_04080 -1.8 -3.7 peptide ABC transporter substrate-binding protein compare
PS417_26985 -1.7 -2.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_22445 -1.7 -2.5 ATP-dependent DNA helicase RuvB compare
PS417_20610 -1.7 -1.2 hypothetical protein compare
PS417_00185 -1.7 -1.6 tryptophan synthase subunit beta compare
PS417_16510 -1.7 -2.3 Clp protease ClpX compare
PS417_12195 -1.7 -5.7 ABC transporter permease compare
PS417_02560 -1.7 -2.1 23S rRNA methyltransferase compare
PS417_24705 -1.7 -1.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_16490 -1.7 -1.0 cell division protein FtsK compare
PS417_27585 -1.6 -1.8 diaminopimelate epimerase compare
PS417_08540 -1.6 -1.7 RNA helicase compare
PS417_07615 -1.6 -4.2 TetR family transcriptional regulator compare
PS417_25645 -1.6 -4.4 peptidase M23 compare
PS417_04050 -1.5 -2.2 peptide ABC transporter ATP-binding protein compare
PS417_18205 -1.5 -2.3 aldehyde dehydrogenase compare
PS417_04435 -1.5 -5.9 uracil phosphoribosyltransferase compare
PS417_07595 -1.5 -2.9 PasA protein compare
PS417_23775 -1.5 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_21480 -1.5 -1.4 23S rRNA pseudouridylate synthase compare
PS417_24585 -1.5 -6.8 AMP nucleosidase compare
PS417_13990 -1.4 -1.7 LysR family transcriptional regulator compare
PS417_00045 -1.4 -0.8 glycerol acyltransferase compare
PS417_01095 -1.4 -1.3 amino acid ABC transporter ATP-binding protein compare
PS417_02555 -1.4 -4.8 exoribonuclease R compare
PS417_05830 -1.4 -2.4 hypothetical protein compare
PS417_28070 -1.4 -5.3 phosphate ABC transporter ATP-binding protein compare
PS417_21125 -1.4 -8.6 phosphoadenosine phosphosulfate reductase compare
PS417_26900 -1.4 -1.5 L-cystine transporter tcyP compare
PS417_27115 -1.4 -7.6 putrescine ABC transporter, ATPase component (from data) compare
PS417_09420 -1.4 -2.1 LysR family transcriptional regulator compare
PS417_23910 -1.4 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_07165 -1.4 -3.1 dihydrodipicolinate synthase compare
PS417_00960 -1.4 -2.0 transcriptional regulator compare
PS417_12200 -1.4 -4.3 microcin ABC transporter permease compare
PS417_10025 -1.4 -1.4 bacteriophage lambda NinG family protein compare
PS417_28080 -1.4 -7.6 phosphate ABC transporter permease compare
PS417_19675 -1.3 -3.7 chemotaxis protein CheY compare
PS417_09965 -1.3 -6.6 hypothetical protein compare
PS417_12310 -1.3 -5.9 methionine synthase compare
PS417_22895 -1.3 -5.9 tyrosine recombinase XerD compare
PS417_09210 -1.3 -1.4 TetR family transcriptional regulator compare
PS417_26725 -1.3 -3.2 hypothetical protein compare
PS417_04070 -1.3 -5.3 porin compare
PS417_00370 -1.3 -1.1 hypothetical protein compare
PS417_04340 -1.3 -3.6 ribosome hibernation promoting factor HPF compare
PS417_08685 -1.3 -1.6 flagellar hook-length control protein FliK compare
PS417_05365 -1.3 -2.0 FAD-binding protein compare
PS417_04475 -1.3 -2.9 hypothetical protein compare
PS417_19955 -1.3 -1.4 hypothetical protein compare
PS417_25270 -1.3 -2.3 NrdR family transcriptional regulator compare
PS417_13455 -1.2 -2.5 alkaline proteinase inhibitor compare
PS417_05160 -1.2 -1.0 DNA polymerase III subunit chi compare
PS417_26990 -1.2 -0.5 RNA pyrophosphohydrolase compare
PS417_23825 -1.2 -4.4 penicillin-binding protein compare
PS417_03685 -1.2 -3.0 FAD-dependent oxidoreductase compare
PS417_22575 -1.2 -3.0 exonuclease I compare
PS417_27125 -1.2 -6.5 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_08245 -1.2 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_23375 -1.2 -2.1 cytochrome C oxidase compare
PS417_22450 -1.2 -0.6 ATP-dependent DNA helicase RuvA compare
PS417_00175 -1.2 -1.1 CigR compare
PS417_02980 -1.2 -1.3 chemotaxis protein compare
PS417_20030 -1.2 -2.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_06770 -1.2 -2.9 multidrug transporter compare
PS417_23950 -1.2 -0.9 polynucleotide phosphorylase/polyadenylase compare
PS417_27425 -1.2 -4.3 exopolyphosphatase compare
PS417_26510 -1.1 -5.2 5,10-methylenetetrahydrofolate reductase compare
PS417_21070 -1.1 -2.3 aconitate hydratase compare
PS417_19415 -1.1 -2.7 allantoinase compare
PS417_26715 -1.1 -4.5 peptidase P60 compare
PS417_23045 -1.1 -2.2 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_02375 -1.1 -4.9 hypothetical protein compare
PS417_09245 -1.1 -1.7 recombinase RdgC compare
PS417_22620 -1.1 -1.9 pyruvate kinase compare
PS417_16465 -1.1 -4.9 sirohydrochlorin ferrochelatase compare
PS417_04865 -1.1 -3.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_13800 -1.1 -1.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_16320 -1.1 -2.1 protein tyrosine phosphatase compare
PS417_13965 -1.1 -3.7 acetoin utilization protein compare
PS417_04380 -1.1 -0.6 ABC transporter permease compare
PS417_18690 -1.1 -2.8 aromatic amino acid aminotransferase compare
PS417_04585 -1.1 -0.9 hypothetical protein compare
PS417_04875 -1.1 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_26730 -1.0 -0.5 pyrroline-5-carboxylate reductase compare
PS417_20880 -1.0 -1.0 GntR family transcriptional regulator compare
PS417_06780 -1.0 -2.0 TetR family transcriptional regulator compare
PS417_12280 -1.0 -1.1 MerR family transcriptional regulator compare
PS417_12205 -1.0 -4.7 hypothetical protein compare
PS417_23025 -1.0 -3.6 murein transglycosylase compare
PS417_02280 -1.0 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_28225 -1.0 -1.2 hypothetical protein compare
PS417_27595 -1.0 -1.6 recombinase XerC compare
PS417_22795 -1.0 -1.4 exclusion suppressor FxsA compare
PS417_22410 -1.0 -3.5 hypothetical protein compare
PS417_18455 -1.0 -1.2 hypothetical protein compare
PS417_20035 -1.0 -3.6 adenosylcobinamide kinase compare
PS417_19335 -1.0 -2.1 isochorismatase compare
PS417_03045 -1.0 -1.6 hypothetical protein compare
PS417_01750 -1.0 -1.7 histidine ammonia-lyase compare
PS417_20050 -1.0 -4.7 cobalamin biosynthesis protein CobD compare
PS417_24620 -1.0 -1.6 hypothetical protein compare
PS417_20160 -1.0 -3.7 cysteine synthase compare
PS417_22360 -1.0 -4.5 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) compare
PS417_00085 -1.0 -1.1 16S rRNA methyltransferase compare
PS417_06025 -1.0 -1.7 alpha/beta hydrolase compare
PS417_14755 -1.0 -1.4 UV damage repair endonuclease UvdE compare
PS417_02395 -0.9 -3.3 DNA topoisomerase IV subunit B compare
PS417_04440 -0.9 -1.4 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_23770 -0.9 -0.6 exodeoxyribonuclease V subunit alpha compare
PS417_13885 -0.9 -2.3 chemotaxis protein CheY compare
PS417_16495 -0.9 -2.6 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_24135 -0.9 -1.4 hypothetical protein compare
PS417_22735 -0.9 -4.8 thiol oxidoreductase compare


Specific Phenotypes

For 10 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms