Experiment set34S663 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_18600 -6.3 -2.4 isopropylmalate isomerase compare
PS417_27040 -5.5 -2.0 3-phosphoglycerate dehydrogenase compare
PS417_16990 -4.8 -5.9 acyl-CoA dehydrogenase compare
PS417_02510 -4.7 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23800 -4.6 -8.3 ketol-acid reductoisomerase compare
PS417_14065 -4.6 -11.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_01575 -4.2 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18595 -4.2 -3.1 3-isopropylmalate dehydratase compare
PS417_18585 -4.2 -4.6 3-isopropylmalate dehydrogenase compare
PS417_01565 -3.8 -3.4 imidazole glycerol phosphate synthase compare
PS417_25725 -3.6 -12.8 anthranilate synthase component I compare
PS417_25720 -3.5 -5.2 anthranilate synthase component II compare
PS417_23995 -3.5 -0.8 preprotein translocase subunit SecG compare
PS417_03310 -3.5 -6.3 carbonate dehydratase compare
PS417_04420 -3.4 -8.5 histidinol dehydrogenase compare
PS417_00755 -3.3 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_02415 -3.3 -3.2 phosphoserine phosphatase compare
PS417_23810 -3.3 -7.3 acetolactate synthase 3 catalytic subunit compare
PS417_08540 -3.2 -1.2 RNA helicase compare
PS417_26890 -3.2 -5.4 dihydroxy-acid dehydratase compare
PS417_23805 -3.1 -3.8 acetolactate synthase 3 regulatory subunit compare
PS417_04415 -3.1 -8.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_13510 -3.1 -0.9 polyketide cyclase compare
PS417_02895 -3.0 -1.5 precorrin-6Y C5,15-methyltransferase compare
PS417_01855 -2.9 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_02975 -2.9 -1.9 3-dehydroquinate dehydratase compare
PS417_12695 -2.9 -3.8 mannitol dehydrogenase compare
PS417_23545 -2.8 -1.2 gamma-glutamyl kinase compare
PS417_26985 -2.8 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26740 -2.8 -6.0 homoserine acetyltransferase compare
PS417_26745 -2.7 -4.9 methionine biosynthesis protein MetW compare
PS417_18530 -2.6 -3.7 O-succinylhomoserine sulfhydrylase compare
PS417_05595 -2.6 -9.5 ornithine carbamoyltransferase compare
PS417_23915 -2.6 -3.1 pantoate--beta-alanine ligase compare
PS417_27305 -2.5 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
PS417_08620 -2.5 -0.5 hypothetical protein compare
PS417_20610 -2.5 -1.0 hypothetical protein compare
PS417_18560 -2.4 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01580 -2.4 -0.7 imidazole glycerol phosphate synthase compare
PS417_25715 -2.4 -3.8 anthranilate phosphoribosyltransferase compare
PS417_10405 -2.3 -0.8 filamentous hemagglutinin compare
PS417_16005 -2.3 -2.5 ATPase compare
PS417_20880 -2.3 -1.9 GntR family transcriptional regulator compare
PS417_27945 -2.3 -1.4 type VI secretion protein ImpA compare
PS417_27195 -2.3 -0.7 N-acetylglutamate synthase compare
PS417_07170 -2.2 -2.5 hypothetical protein compare
PS417_04170 -2.2 -4.8 stringent starvation protein A compare
PS417_24745 -2.2 -1.5 gamma-glutamyl phosphate reductase compare
PS417_27585 -2.2 -1.3 diaminopimelate epimerase compare
PS417_23110 -2.2 -5.0 2-isopropylmalate synthase compare
PS417_09600 -2.1 -3.9 glycosyl transferase family 1 compare
PS417_25710 -2.1 -0.6 indole-3-glycerol-phosphate synthase compare
PS417_19415 -2.1 -2.2 allantoinase compare
PS417_00995 -2.1 -1.3 alpha/beta hydrolase compare
PS417_00535 -2.1 -1.9 Holliday junction resolvase compare
PS417_07140 -2.0 -1.0 peptidase M48 compare
PS417_23370 -2.0 -4.1 protoheme IX farnesyltransferase compare
PS417_14940 -2.0 -1.1 LysR family transcriptional regulator compare
PS417_08230 -2.0 -1.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21630 -2.0 -1.6 magnesium transporter compare
PS417_17565 -2.0 -2.0 branched-chain amino acid aminotransferase compare
PS417_19350 -2.0 -4.0 GTP cyclohydrolase compare
PS417_25650 -2.0 -1.4 anhydro-N-acetylmuramic acid kinase compare
PS417_01560 -1.9 -1.5 imidazoleglycerol-phosphate dehydratase compare
PS417_10920 -1.9 -2.3 LysR family transcriptional regulator compare
PS417_20030 -1.9 -1.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_21480 -1.9 -0.9 23S rRNA pseudouridylate synthase compare
PS417_02560 -1.9 -1.3 23S rRNA methyltransferase compare
PS417_06635 -1.9 -0.9 ferredoxin compare
PS417_17125 -1.8 -2.5 transcriptional regulator compare
PS417_08945 -1.8 -6.4 heat shock protein 90 compare
PS417_20635 -1.8 -0.8 ABC transporter ATP-binding protein compare
PS417_23910 -1.8 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_24710 -1.8 -4.4 lipoprotein compare
PS417_00045 -1.8 -0.5 glycerol acyltransferase compare
PS417_03045 -1.8 -1.2 hypothetical protein compare
PS417_03785 -1.8 -1.3 pilus assembly protein PilV compare
PS417_04225 -1.8 -1.7 conjugal transfer protein TraR compare
PS417_06375 -1.7 -0.4 deoxycytidine triphosphate deaminase compare
PS417_04595 -1.7 -0.9 cell division protein MraZ compare
PS417_25790 -1.7 -2.5 aminoglycoside phosphotransferase compare
PS417_24115 -1.7 -1.1 hypothetical protein compare
PS417_12855 -1.7 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_16510 -1.7 -1.9 Clp protease ClpX compare
PS417_21655 -1.7 -0.5 aspartate kinase compare
PS417_06245 -1.7 -1.0 zinc metallopeptidase RseP compare
PS417_12200 -1.7 -4.4 microcin ABC transporter permease compare
PS417_20130 -1.7 -6.5 dehydrogenase compare
PS417_04440 -1.7 -1.4 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_23765 -1.7 -2.9 hypothetical protein compare
PS417_02575 -1.7 -2.6 membrane protein compare
PS417_04960 -1.6 -1.0 hypothetical protein compare
PS417_14590 -1.6 -1.1 LysR family transcriptional regulator compare
PS417_23390 -1.6 -5.3 ubiquinol oxidase subunit II compare
PS417_08580 -1.6 -4.4 histidine kinase compare
PS417_01570 -1.6 -1.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_06075 -1.6 -1.0 hypothetical protein compare
PS417_19425 -1.6 -0.6 allantoicase compare
PS417_26235 -1.6 -3.9 (Fe-S)-binding protein compare
PS417_26995 -1.6 -5.5 phosphoserine phosphatase compare
PS417_02000 -1.6 -7.3 glutamate synthase compare
PS417_05570 -1.6 -2.2 DeoR faimly transcriptional regulator compare
PS417_07620 -1.6 -0.4 beta-hexosaminidase compare
PS417_11865 -1.6 -2.2 xylose isomerase compare
PS417_26815 -1.5 -1.2 peptidase M16 compare
PS417_07640 -1.5 -1.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_21510 -1.5 -2.0 histidine kinase compare
PS417_02475 -1.5 -1.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_15135 -1.5 -0.9 hypothetical protein compare
PS417_16715 -1.5 -1.0 DoxX family protein compare
PS417_06685 -1.5 -0.4 beta-ketoadipyl CoA thiolase compare
PS417_02005 -1.5 -5.2 glutamate synthase compare
PS417_12195 -1.5 -2.6 ABC transporter permease compare
PS417_11825 -1.5 -1.5 transcriptional regulator compare
PS417_09325 -1.4 -1.8 peptidase S41 compare
PS417_28230 -1.4 -1.6 transcriptional regulator compare
PS417_02705 -1.4 -1.5 urease accessory protein UreF compare
PS417_26230 -1.4 -2.6 electron transfer flavoprotein subunit alpha compare
PS417_28050 -1.4 -1.7 hypothetical protein compare
PS417_10390 -1.4 -1.8 RNA polymerase subunit sigma24 compare
PS417_04080 -1.4 -1.9 peptide ABC transporter substrate-binding protein compare
PS417_08205 -1.4 -3.4 acetyltransferase compare
PS417_12205 -1.4 -4.5 hypothetical protein compare
PS417_16515 -1.4 -1.7 Clp protease ClpS compare
PS417_04865 -1.4 -2.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_16885 -1.4 -2.0 hypothetical protein compare
PS417_18060 -1.4 -1.3 general secretion pathway protein GspJ compare
PS417_26175 -1.4 -0.6 sarcosine oxidase subunit gamma compare
PS417_27435 -1.4 -4.5 polyphosphate kinase compare
PS417_05550 -1.4 -3.2 amino acid ABC transporter permease compare
PS417_00185 -1.4 -0.7 tryptophan synthase subunit beta compare
PS417_16520 -1.3 -1.4 cold-shock protein compare
PS417_24290 -1.3 -2.9 hypothetical protein compare
PS417_05830 -1.3 -1.6 hypothetical protein compare
PS417_06680 -1.3 -1.8 nuclease PIN compare
PS417_23825 -1.3 -3.7 penicillin-binding protein compare
PS417_03475 -1.3 -1.9 type III secretion protein compare
PS417_24800 -1.3 -2.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_11885 -1.3 -1.3 Inositol transport system sugar-binding protein (from data) compare
PS417_05010 -1.3 -1.1 IclR family transcriptional regulator compare
PS417_25645 -1.3 -2.6 peptidase M23 compare
PS417_24230 -1.3 -4.3 ATP-dependent protease compare
PS417_20340 -1.3 -1.3 hypothetical protein compare
PS417_12310 -1.3 -4.7 methionine synthase compare
PS417_08200 -1.3 -3.1 hypothetical protein compare
PS417_03815 -1.3 -1.5 DNA transporter compare
PS417_22895 -1.3 -4.0 tyrosine recombinase XerD compare
PS417_26225 -1.3 -2.2 electron transfer flavoprotein subunit beta compare
PS417_00380 -1.3 -2.1 zinc ABC transporter ATP-binding protein compare
PS417_03830 -1.3 -5.2 protein disaggregation chaperone compare
PS417_16195 -1.3 -0.6 AraC family transcriptional regulator compare
PS417_05105 -1.3 -2.1 membrane protein compare
PS417_06025 -1.3 -1.9 alpha/beta hydrolase compare
PS417_09200 -1.3 -2.2 ABC transporter compare
PS417_06530 -1.3 -1.0 membrane protein compare
PS417_17590 -1.3 -1.3 ABC transporter substrate-binding protein compare
PS417_22795 -1.3 -1.0 exclusion suppressor FxsA compare
PS417_18425 -1.2 -0.9 sporulation protein compare
PS417_27425 -1.2 -4.7 exopolyphosphatase compare
PS417_01620 -1.2 -1.1 preprotein translocase subunit SecB compare
PS417_05165 -1.2 -1.5 cytosol aminopeptidase compare
PS417_11860 -1.2 -2.7 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
PS417_20650 -1.2 -5.6 hypothetical protein compare
PS417_19420 -1.2 -2.6 OHCU decarboxylase compare
PS417_05160 -1.2 -0.6 DNA polymerase III subunit chi compare
PS417_08125 -1.2 -0.2 prephenate dehydratase compare
PS417_08170 -1.2 -4.3 capsular biosynthesis protein compare
PS417_27835 -1.2 -3.1 endoribonuclease compare
PS417_26420 -1.2 -0.6 hypothetical protein compare
PS417_28070 -1.2 -3.4 phosphate ABC transporter ATP-binding protein compare
PS417_01675 -1.2 -5.1 maltodextrin phosphorylase compare
PS417_23775 -1.2 -0.9 exodeoxyribonuclease V subunit beta compare
PS417_19835 -1.2 -0.6 flagellar biosynthesis protein FliS compare
PS417_07165 -1.2 -2.4 dihydrodipicolinate synthase compare
PS417_24535 -1.2 -1.1 membrane protein compare
PS417_06775 -1.2 -1.9 antibiotic transporter compare
PS417_18630 -1.2 -1.7 tRNA-dihydrouridine synthase C compare
PS417_12035 -1.2 -1.4 dihydroxyacetone kinase compare
PS417_02915 -1.2 -2.2 precorrin-3B C17-methyltransferase compare
PS417_04050 -1.2 -1.1 peptide ABC transporter ATP-binding protein compare
PS417_09575 -1.2 -1.4 glutathione S-transferase compare
PS417_19675 -1.2 -1.8 chemotaxis protein CheY compare
PS417_13795 -1.2 -4.1 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_27340 -1.1 -2.0 NADPH:quinone oxidoreductase compare
PS417_04270 -1.1 -3.4 ribonuclease G compare
PS417_16400 -1.1 -1.1 NAD(P)H-quinone oxidoreductase compare
PS417_03795 -1.1 -3.2 pilus assembly protein PilX compare
PS417_00370 -1.1 -0.6 hypothetical protein compare
PS417_22445 -1.1 -1.0 ATP-dependent DNA helicase RuvB compare
PS417_04220 -1.1 -0.6 4-carboxymuconolactone decarboxylase compare
PS417_12375 -1.1 -1.0 serine/threonine protein phosphatase compare
PS417_24835 -1.1 -3.1 hypothetical protein compare
PS417_22300 -1.1 -0.7 LTXXQ domain protein compare
PS417_09915 -1.1 -0.7 hypothetical protein compare
PS417_08090 -1.1 -0.3 3-oxoacyl-ACP reductase compare
PS417_03260 -1.1 -0.3 5S ribosomal RNA compare
PS417_02375 -1.1 -3.2 hypothetical protein compare
PS417_00295 -1.1 -3.9 hypothetical protein compare
PS417_15510 -1.1 -1.1 hypothetical protein compare
PS417_22565 -1.1 -0.2 formyltetrahydrofolate deformylase compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms