Experiment set34S661 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.2 -3.7 3-phosphoglycerate dehydrogenase compare
PS417_23915 -3.8 -5.2 pantoate--beta-alanine ligase compare
PS417_18560 -3.7 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_03310 -3.4 -10.3 carbonate dehydratase compare
PS417_23805 -3.3 -4.9 acetolactate synthase 3 regulatory subunit compare
PS417_25725 -3.0 -13.6 anthranilate synthase component I compare
PS417_18530 -3.0 -7.4 O-succinylhomoserine sulfhydrylase compare
PS417_02415 -2.9 -5.1 phosphoserine phosphatase compare
PS417_23810 -2.9 -10.9 acetolactate synthase 3 catalytic subunit compare
PS417_25720 -2.8 -9.1 anthranilate synthase component II compare
PS417_23800 -2.7 -11.7 ketol-acid reductoisomerase compare
PS417_12855 -2.6 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25715 -2.6 -5.5 anthranilate phosphoribosyltransferase compare
PS417_07165 -2.5 -5.1 dihydrodipicolinate synthase compare
PS417_27435 -2.5 -9.0 polyphosphate kinase compare
PS417_25710 -2.5 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_16005 -2.5 -3.8 ATPase compare
PS417_26740 -2.4 -9.5 homoserine acetyltransferase compare
PS417_06245 -2.3 -2.2 zinc metallopeptidase RseP compare
PS417_18595 -2.3 -5.5 3-isopropylmalate dehydratase compare
PS417_13510 -2.3 -1.6 polyketide cyclase compare
PS417_06645 -2.3 -9.4 RNA polymerase-associated protein RapA compare
PS417_07560 -2.2 -1.9 universal stress protein UspA compare
PS417_08245 -2.2 -1.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18585 -2.2 -5.6 3-isopropylmalate dehydrogenase compare
PS417_25650 -2.2 -2.8 anhydro-N-acetylmuramic acid kinase compare
PS417_24575 -2.2 -1.9 hypothetical protein compare
PS417_23545 -2.1 -2.4 gamma-glutamyl kinase compare
PS417_06375 -2.1 -0.7 deoxycytidine triphosphate deaminase compare
PS417_26890 -2.1 -6.8 dihydroxy-acid dehydratase compare
PS417_26745 -2.1 -6.3 methionine biosynthesis protein MetW compare
PS417_28220 -2.1 -2.6 LysR family transcriptional regulator compare
PS417_07170 -2.0 -3.7 hypothetical protein compare
PS417_18600 -2.0 -3.8 isopropylmalate isomerase compare
PS417_02000 -2.0 -10.9 glutamate synthase compare
PS417_23375 -2.0 -2.5 cytochrome C oxidase compare
PS417_02510 -1.8 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_22815 -1.8 -2.7 permease compare
PS417_27585 -1.8 -2.1 diaminopimelate epimerase compare
PS417_02975 -1.8 -2.3 3-dehydroquinate dehydratase compare
PS417_20775 -1.8 -2.3 coproporphyrinogen III oxidase compare
PS417_26695 -1.8 -1.2 uracil phosphoribosyltransferase compare
PS417_23775 -1.8 -2.1 exodeoxyribonuclease V subunit beta compare
PS417_22520 -1.7 -1.6 histidine kinase compare
PS417_19505 -1.7 -2.3 2,4-diaminobutyrate 4-aminotransferase compare
PS417_02005 -1.7 -6.1 glutamate synthase compare
PS417_04170 -1.7 -4.7 stringent starvation protein A compare
PS417_24705 -1.7 -2.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_04585 -1.7 -1.4 hypothetical protein compare
PS417_05595 -1.6 -6.9 ornithine carbamoyltransferase compare
PS417_22780 -1.6 -5.6 XRE family transcriptional regulator compare
PS417_00185 -1.6 -1.7 tryptophan synthase subunit beta compare
PS417_05235 -1.5 -2.7 peptidase inhibitor I42 compare
PS417_22565 -1.5 -0.5 formyltetrahydrofolate deformylase compare
PS417_01920 -1.5 -0.7 ATP-dependent protease subunit HslV compare
PS417_19425 -1.5 -1.0 allantoicase compare
PS417_08620 -1.5 -0.7 hypothetical protein compare
PS417_02575 -1.5 -2.8 membrane protein compare
PS417_23110 -1.5 -5.9 2-isopropylmalate synthase compare
PS417_27195 -1.5 -1.2 N-acetylglutamate synthase compare
PS417_23390 -1.4 -6.5 ubiquinol oxidase subunit II compare
PS417_08580 -1.4 -5.1 histidine kinase compare
PS417_08685 -1.4 -1.9 flagellar hook-length control protein FliK compare
PS417_03045 -1.4 -2.2 hypothetical protein compare
PS417_26985 -1.4 -3.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_04415 -1.4 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_04365 -1.4 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_00085 -1.3 -2.3 16S rRNA methyltransferase compare
PS417_24745 -1.3 -2.2 gamma-glutamyl phosphate reductase compare
PS417_02560 -1.3 -1.8 23S rRNA methyltransferase compare
PS417_08170 -1.3 -5.2 capsular biosynthesis protein compare
PS417_17470 -1.3 -1.1 LuxR family transcriptional regulator compare
PS417_06735 -1.3 -1.8 3-oxoadipate enol-lactonase compare
PS417_08540 -1.3 -1.6 RNA helicase compare
PS417_28225 -1.3 -1.6 hypothetical protein compare
PS417_21630 -1.3 -1.9 magnesium transporter compare
PS417_23370 -1.3 -4.0 protoheme IX farnesyltransferase compare
PS417_01575 -1.3 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02270 -1.3 -3.3 carbamoyltransferase compare
PS417_02555 -1.3 -5.3 exoribonuclease R compare
PS417_01580 -1.2 -1.4 imidazole glycerol phosphate synthase compare
PS417_01855 -1.2 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_24710 -1.2 -3.5 lipoprotein compare
PS417_20125 -1.2 -3.0 phosphoribosylglycinamide formyltransferase compare
PS417_01950 -1.2 -4.7 malate dehydrogenase compare
PS417_22690 -1.2 -2.7 phosphogluconate dehydratase compare
PS417_23385 -1.2 -6.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_23910 -1.2 -3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_20755 -1.2 -2.5 membrane protein compare
PS417_26370 -1.1 -3.3 RNA helicase compare
PS417_07305 -1.1 -1.7 3-beta hydroxysteroid dehydrogenase compare
PS417_27135 -1.1 -0.5 glutamine synthetase compare
PS417_16990 -1.1 -4.5 acyl-CoA dehydrogenase compare
PS417_27835 -1.1 -4.2 endoribonuclease compare
PS417_15885 -1.1 -2.0 GCN5 family acetyltransferase compare
PS417_23995 -1.1 -0.8 preprotein translocase subunit SecG compare
PS417_04380 -1.1 -0.6 ABC transporter permease compare
PS417_11430 -1.1 -5.4 EamA compare
PS417_01850 -1.1 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_22795 -1.1 -1.3 exclusion suppressor FxsA compare
PS417_26120 -1.1 -1.4 hypothetical protein compare
PS417_26730 -1.1 -0.5 pyrroline-5-carboxylate reductase compare
PS417_01565 -1.1 -2.8 imidazole glycerol phosphate synthase compare
PS417_22445 -1.1 -1.5 ATP-dependent DNA helicase RuvB compare
PS417_05165 -1.1 -2.8 cytosol aminopeptidase compare
PS417_27945 -1.1 -1.6 type VI secretion protein ImpA compare
PS417_23900 -1.0 -4.9 poly(A) polymerase compare
PS417_07870 -1.0 -1.7 hypothetical protein compare
PS417_05570 -1.0 -3.0 DeoR faimly transcriptional regulator compare
PS417_11440 -1.0 -1.3 hypothetical protein compare
PS417_27245 -1.0 -1.7 aminotransferase DegT compare
PS417_21430 -1.0 -0.6 3-oxoacyl-ACP synthase compare
PS417_20670 -1.0 -4.9 glycosyl transferase family 2 compare
PS417_23770 -1.0 -0.6 exodeoxyribonuclease V subunit alpha compare
PS417_20650 -1.0 -6.4 hypothetical protein compare
PS417_17125 -1.0 -3.0 transcriptional regulator compare
PS417_06680 -1.0 -2.6 nuclease PIN compare
PS417_20030 -1.0 -2.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_21480 -1.0 -1.1 23S rRNA pseudouridylate synthase compare
PS417_08225 -1.0 -3.4 acetolactate synthase compare
PS417_00390 -1.0 -3.0 ABC transporter substrate-binding protein compare
PS417_04270 -1.0 -4.5 ribonuclease G compare
PS417_21575 -1.0 -3.8 chemotaxis protein compare
PS417_27675 -1.0 -2.7 xanthine phosphoribosyltransferase compare
PS417_22300 -1.0 -1.2 LTXXQ domain protein compare
PS417_08825 -0.9 -2.4 TetR family transcriptional regulator compare
PS417_16475 -0.9 -2.9 camphor resistance protein CrcB compare
PS417_00550 -0.9 -0.9 hypothetical protein compare
PS417_08205 -0.9 -3.2 acetyltransferase compare
PS417_01560 -0.9 -1.2 imidazoleglycerol-phosphate dehydratase compare
PS417_08195 -0.9 -6.1 hypothetical protein compare
PS417_16560 -0.9 -1.4 GNAT family acetyltransferase compare
PS417_22575 -0.9 -5.0 exonuclease I compare
PS417_28070 -0.9 -3.2 phosphate ABC transporter ATP-binding protein compare
PS417_20880 -0.9 -2.0 GntR family transcriptional regulator compare
PS417_20785 -0.9 -0.8 transcriptional regulator compare
PS417_21125 -0.9 -5.4 phosphoadenosine phosphosulfate reductase compare
PS417_20160 -0.9 -2.5 cysteine synthase compare
PS417_14905 -0.9 -1.9 C4-dicarboxylate ABC transporter compare
PS417_08200 -0.9 -2.6 hypothetical protein compare
PS417_05695 -0.9 -3.1 transcriptional regulator compare
PS417_04650 -0.9 -0.4 D-alanine--D-alanine ligase compare
PS417_04225 -0.9 -2.2 conjugal transfer protein TraR compare
PS417_28080 -0.9 -6.3 phosphate ABC transporter permease compare
PS417_04220 -0.9 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_16855 -0.9 -1.4 cation:proton antiporter compare
PS417_18250 -0.9 -1.9 chemotaxis protein compare
PS417_16520 -0.9 -1.2 cold-shock protein compare
PS417_18425 -0.9 -1.3 sporulation protein compare
PS417_15030 -0.9 -1.0 short-chain dehydrogenase compare
PS417_25645 -0.8 -2.3 peptidase M23 compare
PS417_18730 -0.8 -2.2 ABC transporter permease compare
PS417_16275 -0.8 -1.7 hypothetical protein compare
PS417_02890 -0.8 -2.5 cobalt-precorrin-6X reductase compare
PS417_12035 -0.8 -2.1 dihydroxyacetone kinase compare
PS417_28275 -0.8 -2.2 cobalamin biosynthesis protein CobW compare
PS417_28440 -0.8 -2.0 hypothetical protein compare
PS417_08090 -0.8 -0.5 3-oxoacyl-ACP reductase compare
PS417_06635 -0.8 -1.1 ferredoxin compare
PS417_23250 -0.8 -2.9 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_00180 -0.8 -0.5 tryptophan synthase subunit alpha compare
PS417_13800 -0.8 -2.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_07420 -0.8 -2.6 restriction endonuclease compare
PS417_13885 -0.8 -1.6 chemotaxis protein CheY compare
PS417_15510 -0.8 -1.3 hypothetical protein compare
PS417_23380 -0.8 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_25705 -0.8 -1.8 lipoate--protein ligase compare
PS417_17565 -0.8 -1.8 branched-chain amino acid aminotransferase compare
PS417_20265 -0.8 -3.5 transcriptional regulator compare
PS417_01570 -0.8 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_27100 -0.8 -2.6 phosphohydrolase compare
PS417_00940 -0.8 -3.2 sulfate ABC transporter permease compare
PS417_02885 -0.8 -0.8 hypothetical protein compare
PS417_11705 -0.8 -2.5 cyclic peptide transporter compare
PS417_12310 -0.8 -3.9 methionine synthase compare
PS417_17505 -0.8 -2.3 LuxR family transcriptional regulator compare
PS417_12375 -0.8 -1.5 serine/threonine protein phosphatase compare
PS417_27425 -0.8 -4.2 exopolyphosphatase compare
PS417_21380 -0.8 -2.8 GntR family transcriptional regulator compare
PS417_13455 -0.8 -2.1 alkaline proteinase inhibitor compare
PS417_12345 -0.8 -2.5 cobalamin biosynthesis protein CobW compare
PS417_08335 -0.8 -1.3 hypothetical protein compare
PS417_02630 -0.8 -1.8 NAD synthetase compare
PS417_04865 -0.8 -2.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_05010 -0.7 -1.3 IclR family transcriptional regulator compare
PS417_14835 -0.7 -3.1 amidase compare
PS417_02370 -0.7 -1.2 ADP-ribose pyrophosphatase compare
PS417_20610 -0.7 -0.9 hypothetical protein compare
PS417_04420 -0.7 -3.8 histidinol dehydrogenase compare
PS417_10275 -0.7 -1.5 histidine kinase compare
PS417_26715 -0.7 -3.3 peptidase P60 compare
PS417_21180 -0.7 -2.2 short-chain dehydrogenase compare
PS417_28020 -0.7 -1.5 chorismate--pyruvate lyase compare
PS417_28085 -0.7 -4.6 phosphate-binding protein compare
PS417_08350 -0.7 -2.1 preprotein translocase subunit TatD compare
PS417_28200 -0.7 -1.2 hypothetical protein compare
PS417_07565 -0.7 -1.1 hypothetical protein compare
PS417_25290 -0.7 -2.1 hypothetical protein compare
PS417_11015 -0.7 -1.9 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_01710 -0.7 -2.7 histidine utilization repressor compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in in planta experiments

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms