Experiment set34S660 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_27040 -4.8 -3.9 3-phosphoglycerate dehydrogenase compare
PS417_01560 -3.8 -2.6 imidazoleglycerol-phosphate dehydratase compare
PS417_23995 -3.5 -1.2 preprotein translocase subunit SecG compare
PS417_23805 -3.5 -5.3 acetolactate synthase 3 regulatory subunit compare
PS417_25720 -3.1 -5.8 anthranilate synthase component II compare
PS417_21480 -3.1 -1.7 23S rRNA pseudouridylate synthase compare
PS417_23915 -3.1 -4.5 pantoate--beta-alanine ligase compare
PS417_25725 -3.0 -14.1 anthranilate synthase component I compare
PS417_23810 -2.9 -9.8 acetolactate synthase 3 catalytic subunit compare
PS417_18560 -2.9 -4.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_19600 -2.8 -1.3 exonuclease compare
PS417_23800 -2.8 -10.9 ketol-acid reductoisomerase compare
PS417_06245 -2.7 -1.8 zinc metallopeptidase RseP compare
PS417_19955 -2.7 -1.8 hypothetical protein compare
PS417_27945 -2.5 -2.1 type VI secretion protein ImpA compare
PS417_06540 -2.5 -2.0 membrane protein compare
PS417_13075 -2.5 -2.0 hypothetical protein compare
PS417_17240 -2.5 -2.8 trigger factor compare
PS417_08620 -2.5 -0.8 hypothetical protein compare
PS417_18600 -2.4 -3.4 isopropylmalate isomerase compare
PS417_02415 -2.4 -4.2 phosphoserine phosphatase compare
PS417_27195 -2.4 -1.1 N-acetylglutamate synthase compare
PS417_03310 -2.3 -5.0 carbonate dehydratase compare
PS417_18595 -2.3 -3.9 3-isopropylmalate dehydratase compare
PS417_13510 -2.3 -1.3 polyketide cyclase compare
PS417_24500 -2.3 -2.5 DEAD/DEAH box helicase compare
PS417_25715 -2.3 -4.3 anthranilate phosphoribosyltransferase compare
PS417_21630 -2.3 -2.2 magnesium transporter compare
PS417_12855 -2.3 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24705 -2.2 -1.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_05595 -2.2 -10.1 ornithine carbamoyltransferase compare
PS417_28220 -2.2 -2.1 LysR family transcriptional regulator compare
PS417_25710 -2.2 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_26890 -2.2 -7.3 dihydroxy-acid dehydratase compare
PS417_23545 -2.2 -1.9 gamma-glutamyl kinase compare
PS417_08685 -2.2 -1.7 flagellar hook-length control protein FliK compare
PS417_28070 -2.1 -5.8 phosphate ABC transporter ATP-binding protein compare
PS417_20635 -2.1 -1.4 ABC transporter ATP-binding protein compare
PS417_24745 -2.1 -2.4 gamma-glutamyl phosphate reductase compare
PS417_07170 -2.0 -3.0 hypothetical protein compare
PS417_16490 -2.0 -0.9 cell division protein FtsK compare
PS417_02000 -1.9 -9.9 glutamate synthase compare
PS417_02005 -1.9 -8.7 glutamate synthase compare
PS417_22620 -1.9 -2.9 pyruvate kinase compare
PS417_04170 -1.8 -4.4 stringent starvation protein A compare
PS417_16990 -1.8 -6.8 acyl-CoA dehydrogenase compare
PS417_02975 -1.8 -3.0 3-dehydroquinate dehydratase compare
PS417_06375 -1.8 -0.6 deoxycytidine triphosphate deaminase compare
PS417_01575 -1.8 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02510 -1.7 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26985 -1.7 -3.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08540 -1.7 -1.5 RNA helicase compare
PS417_00705 -1.7 -1.3 MarR family transcriptional regulator compare
PS417_06645 -1.7 -6.8 RNA polymerase-associated protein RapA compare
PS417_08825 -1.7 -3.3 TetR family transcriptional regulator compare
PS417_10405 -1.7 -1.1 filamentous hemagglutinin compare
PS417_13165 -1.7 -2.5 peroxidase compare
PS417_23375 -1.7 -1.9 cytochrome C oxidase compare
PS417_09420 -1.7 -2.2 LysR family transcriptional regulator compare
PS417_02560 -1.7 -1.4 23S rRNA methyltransferase compare
PS417_16475 -1.7 -3.0 camphor resistance protein CrcB compare
PS417_07620 -1.6 -0.7 beta-hexosaminidase compare
PS417_27870 -1.6 -2.1 ATP-dependent DNA helicase RecG compare
PS417_26740 -1.6 -6.6 homoserine acetyltransferase compare
PS417_18585 -1.6 -4.6 3-isopropylmalate dehydrogenase compare
PS417_00185 -1.5 -1.0 tryptophan synthase subunit beta compare
PS417_04050 -1.5 -2.1 peptide ABC transporter ATP-binding protein compare
PS417_07540 -1.5 -3.0 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_27005 -1.5 -1.1 membrane protein compare
PS417_06735 -1.5 -2.2 3-oxoadipate enol-lactonase compare
PS417_22340 -1.5 -2.9 carbamate kinase compare
PS417_27585 -1.5 -1.1 diaminopimelate epimerase compare
PS417_18530 -1.5 -2.8 O-succinylhomoserine sulfhydrylase compare
PS417_26695 -1.5 -0.9 uracil phosphoribosyltransferase compare
PS417_12535 -1.4 -2.0 nitrilase compare
PS417_19605 -1.4 -1.1 hypothetical protein compare
PS417_08025 -1.4 -1.2 acetylornithine aminotransferase compare
PS417_19350 -1.4 -4.1 GTP cyclohydrolase compare
PS417_23370 -1.4 -2.7 protoheme IX farnesyltransferase compare
PS417_27835 -1.4 -4.1 endoribonuclease compare
PS417_26745 -1.4 -3.7 methionine biosynthesis protein MetW compare
PS417_08580 -1.3 -3.7 histidine kinase compare
PS417_16555 -1.3 -1.1 cupin compare
PS417_10810 -1.3 -1.9 hypothetical protein compare
PS417_07560 -1.3 -1.3 universal stress protein UspA compare
PS417_26685 -1.3 -2.3 hypothetical protein compare
PS417_05100 -1.3 -1.7 RNA polymerase sigma factor compare
PS417_22815 -1.3 -2.2 permease compare
PS417_15085 -1.3 -3.4 ATPase AAA compare
PS417_02895 -1.3 -1.4 precorrin-6Y C5,15-methyltransferase compare
PS417_06530 -1.3 -1.5 membrane protein compare
PS417_14805 -1.3 -1.6 AraC family transcriptional regulator compare
PS417_27435 -1.3 -5.2 polyphosphate kinase compare
PS417_26370 -1.3 -2.9 RNA helicase compare
PS417_03815 -1.3 -1.8 DNA transporter compare
PS417_01920 -1.3 -0.5 ATP-dependent protease subunit HslV compare
PS417_01580 -1.3 -1.1 imidazole glycerol phosphate synthase compare
PS417_22565 -1.3 -0.4 formyltetrahydrofolate deformylase compare
PS417_07165 -1.2 -3.2 dihydrodipicolinate synthase compare
PS417_23390 -1.2 -3.9 ubiquinol oxidase subunit II compare
PS417_05165 -1.2 -2.5 cytosol aminopeptidase compare
PS417_24525 -1.2 -1.5 nuclease compare
PS417_08125 -1.2 -0.4 prephenate dehydratase compare
PS417_10425 -1.2 -1.2 hypothetical protein compare
PS417_12490 -1.2 -1.4 autotransporter adhesin compare
PS417_20670 -1.2 -4.7 glycosyl transferase family 2 compare
PS417_17565 -1.2 -1.5 branched-chain amino acid aminotransferase compare
PS417_00370 -1.2 -0.9 hypothetical protein compare
PS417_03260 -1.2 -0.5 5S ribosomal RNA compare
PS417_22575 -1.2 -4.4 exonuclease I compare
PS417_10025 -1.2 -1.1 bacteriophage lambda NinG family protein compare
PS417_00380 -1.2 -2.9 zinc ABC transporter ATP-binding protein compare
PS417_04585 -1.2 -0.8 hypothetical protein compare
PS417_06600 -1.1 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_23110 -1.1 -4.4 2-isopropylmalate synthase compare
PS417_06680 -1.1 -2.1 nuclease PIN compare
PS417_17545 -1.1 -2.1 2-oxoisovalerate dehydrogenase compare
PS417_02370 -1.1 -1.4 ADP-ribose pyrophosphatase compare
PS417_24765 -1.1 -1.8 membrane protein compare
PS417_23910 -1.1 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_20140 -1.1 -1.8 nucleoprotein/polynucleotide-associated enzyme compare
PS417_25645 -1.1 -3.1 peptidase M23 compare
PS417_23385 -1.1 -4.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_06770 -1.1 -2.3 multidrug transporter compare
PS417_27245 -1.1 -1.5 aminotransferase DegT compare
PS417_15535 -1.1 -2.8 oxidoreductase compare
PS417_22780 -1.1 -1.9 XRE family transcriptional regulator compare
PS417_10575 -1.1 -1.8 DNA alkylation repair protein compare
PS417_17490 -1.1 -1.9 ABC transporter ATP-binding protein compare
PS417_06780 -1.1 -1.7 TetR family transcriptional regulator compare
PS417_08170 -1.1 -3.9 capsular biosynthesis protein compare
PS417_16000 -1.1 -1.3 chemotaxis protein CheY compare
PS417_10655 -1.1 -1.8 LuxR family transcriptional regulator compare
PS417_25390 -1.0 -1.9 MFS transporter compare
PS417_23025 -1.0 -3.1 murein transglycosylase compare
PS417_25650 -1.0 -1.4 anhydro-N-acetylmuramic acid kinase compare
PS417_27305 -1.0 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
PS417_04365 -1.0 -0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_20660 -1.0 -5.7 hypothetical protein compare
PS417_09470 -1.0 -1.0 hypothetical protein compare
PS417_04060 -1.0 -2.3 dipeptide ABC transporter, permease component (from data) compare
PS417_24935 -1.0 -0.6 hypothetical protein compare
PS417_10040 -1.0 -0.9 MFS transporter compare
PS417_26390 -1.0 -1.4 acyltransferase compare
PS417_05105 -1.0 -2.2 membrane protein compare
PS417_20650 -1.0 -5.9 hypothetical protein compare
PS417_12840 -1.0 -1.9 TetR family transcriptional regulator compare
PS417_02175 -1.0 -1.9 transcriptional regulator compare
PS417_08225 -1.0 -3.7 acetolactate synthase compare
PS417_03145 -1.0 -1.6 acetyl-CoA acetyltransferase compare
PS417_17610 -1.0 -1.1 AsnC family transcriptional regulator compare
PS417_26815 -1.0 -1.3 peptidase M16 compare
PS417_16005 -1.0 -1.0 ATPase compare
PS417_04435 -1.0 -5.8 uracil phosphoribosyltransferase compare
PS417_06775 -1.0 -2.3 antibiotic transporter compare
PS417_11680 -1.0 -3.3 MFS transporter compare
PS417_24355 -1.0 -2.0 MFS transporter compare
PS417_15745 -1.0 -1.3 lipid carrier protein compare
PS417_26005 -1.0 -5.1 biotin synthase compare
PS417_11375 -1.0 -2.5 hypothetical protein compare
PS417_26995 -0.9 -3.7 phosphoserine phosphatase compare
PS417_04415 -0.9 -4.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_00220 -0.9 -1.2 hypothetical protein compare
PS417_26605 -0.9 -0.7 malonate decarboxylase subunit beta compare
PS417_18040 -0.9 -1.1 general secretion pathway protein GspN compare
PS417_14080 -0.9 -1.6 hypothetical protein compare
PS417_21125 -0.9 -5.7 phosphoadenosine phosphosulfate reductase compare
PS417_02270 -0.9 -2.2 carbamoyltransferase compare
PS417_23900 -0.9 -3.8 poly(A) polymerase compare
PS417_05015 -0.9 -2.5 homogentisate 1,2-dioxygenase compare
PS417_06605 -0.9 -4.4 leucine/isoleucine/valine transporter permease subunit compare
PS417_01855 -0.9 -0.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_03965 -0.9 -3.5 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_09085 -0.9 -0.9 hypothetical protein compare
PS417_22535 -0.9 -3.3 ornithine acetyltransferase compare
PS417_27590 -0.9 -3.8 hypothetical protein compare
PS417_14315 -0.9 -1.0 2,5-dioxovalerate dehydrogenase compare
PS417_17980 -0.9 -1.5 ABC transporter permease compare
PS417_21070 -0.9 -1.7 aconitate hydratase compare
PS417_04420 -0.9 -4.3 histidinol dehydrogenase compare
PS417_14835 -0.9 -3.6 amidase compare
PS417_28080 -0.9 -4.5 phosphate ABC transporter permease compare
PS417_14140 -0.9 -1.2 membrane protein compare
PS417_24135 -0.9 -1.1 hypothetical protein compare
PS417_12935 -0.9 -1.9 RNA polymerase sigma factor compare
PS417_21210 -0.9 -1.3 amidotransferase compare
PS417_06635 -0.9 -0.8 ferredoxin compare
PS417_14240 -0.9 -1.6 isochorismatase compare
PS417_26730 -0.9 -0.4 pyrroline-5-carboxylate reductase compare
PS417_23490 -0.9 -0.5 dihydrofolate reductase compare
PS417_17125 -0.9 -2.4 transcriptional regulator compare
PS417_09865 -0.9 -1.1 hypothetical protein compare
PS417_19190 -0.8 -1.4 BolA family transcriptional regulator compare
PS417_15790 -0.8 -2.6 hypothetical protein compare
PS417_21575 -0.8 -3.7 chemotaxis protein compare
PS417_13620 -0.8 -1.1 thermostable hemolysin compare
PS417_15510 -0.8 -1.4 hypothetical protein compare
PS417_04090 -0.8 -1.9 hypothetical protein compare
PS417_26290 -0.8 -2.5 4-hydroxybenzoyl-CoA thioesterase compare
PS417_06145 -0.8 -0.6 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms