Experiment set34S659 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.1 -3.5 3-phosphoglycerate dehydrogenase compare
PS417_18600 -4.6 -4.3 isopropylmalate isomerase compare
PS417_23805 -3.9 -6.3 acetolactate synthase 3 regulatory subunit compare
PS417_23995 -3.8 -1.3 preprotein translocase subunit SecG compare
PS417_23810 -3.7 -10.9 acetolactate synthase 3 catalytic subunit compare
PS417_23545 -3.5 -2.4 gamma-glutamyl kinase compare
PS417_18585 -3.3 -6.6 3-isopropylmalate dehydrogenase compare
PS417_23800 -3.1 -11.6 ketol-acid reductoisomerase compare
PS417_18530 -2.9 -4.7 O-succinylhomoserine sulfhydrylase compare
PS417_26740 -2.8 -7.5 homoserine acetyltransferase compare
PS417_26745 -2.7 -7.0 methionine biosynthesis protein MetW compare
PS417_18595 -2.6 -5.2 3-isopropylmalate dehydratase compare
PS417_16005 -2.5 -3.2 ATPase compare
PS417_26890 -2.5 -6.4 dihydroxy-acid dehydratase compare
PS417_24745 -2.5 -2.9 gamma-glutamyl phosphate reductase compare
PS417_25725 -2.5 -14.1 anthranilate synthase component I compare
PS417_02975 -2.5 -3.9 3-dehydroquinate dehydratase compare
PS417_03310 -2.4 -7.1 carbonate dehydratase compare
PS417_08025 -2.4 -1.9 acetylornithine aminotransferase compare
PS417_00755 -2.4 -1.1 biofilm PGA synthesis protein PgaD compare
PS417_25650 -2.3 -2.6 anhydro-N-acetylmuramic acid kinase compare
PS417_02415 -2.3 -4.5 phosphoserine phosphatase compare
PS417_20775 -2.2 -2.6 coproporphyrinogen III oxidase compare
PS417_04585 -2.2 -1.3 hypothetical protein compare
PS417_05595 -2.2 -10.4 ornithine carbamoyltransferase compare
PS417_20855 -2.2 -1.0 hypothetical protein compare
PS417_25720 -2.2 -6.2 anthranilate synthase component II compare
PS417_06245 -2.1 -1.8 zinc metallopeptidase RseP compare
PS417_18560 -2.1 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_12855 -2.1 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_28220 -2.1 -2.3 LysR family transcriptional regulator compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_26985 -2.0 -4.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_00185 -2.0 -1.3 tryptophan synthase subunit beta compare
PS417_23915 -2.0 -3.5 pantoate--beta-alanine ligase compare
PS417_01580 -2.0 -1.5 imidazole glycerol phosphate synthase compare
PS417_20635 -1.9 -1.6 ABC transporter ATP-binding protein compare
PS417_24500 -1.9 -3.3 DEAD/DEAH box helicase compare
PS417_02000 -1.9 -10.0 glutamate synthase compare
PS417_22815 -1.9 -2.5 permease compare
PS417_21480 -1.9 -1.4 23S rRNA pseudouridylate synthase compare
PS417_20610 -1.9 -1.7 hypothetical protein compare
PS417_04365 -1.9 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_17565 -1.8 -3.9 branched-chain amino acid aminotransferase compare
PS417_01855 -1.8 -2.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_02510 -1.7 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25710 -1.7 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_09010 -1.6 -2.0 phosphohistidine phosphatase compare
PS417_09210 -1.6 -1.9 TetR family transcriptional regulator compare
PS417_07140 -1.6 -1.7 peptidase M48 compare
PS417_04170 -1.6 -5.8 stringent starvation protein A compare
PS417_23110 -1.6 -4.4 2-isopropylmalate synthase compare
PS417_08130 -1.6 -1.8 aspartate aminotransferase compare
PS417_02005 -1.6 -7.2 glutamate synthase compare
PS417_27585 -1.6 -1.9 diaminopimelate epimerase compare
PS417_16990 -1.6 -7.1 acyl-CoA dehydrogenase compare
PS417_08200 -1.5 -4.0 hypothetical protein compare
PS417_04415 -1.5 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01565 -1.5 -3.9 imidazole glycerol phosphate synthase compare
PS417_19955 -1.5 -1.9 hypothetical protein compare
PS417_08125 -1.5 -0.5 prephenate dehydratase compare
PS417_08335 -1.5 -1.8 hypothetical protein compare
PS417_22565 -1.5 -0.5 formyltetrahydrofolate deformylase compare
PS417_17795 -1.5 -1.8 ABC transporter permease compare
PS417_03045 -1.5 -2.2 hypothetical protein compare
PS417_21000 -1.5 -1.8 CrfX protein compare
PS417_27435 -1.5 -6.5 polyphosphate kinase compare
PS417_23900 -1.5 -6.1 poly(A) polymerase compare
PS417_00370 -1.5 -1.3 hypothetical protein compare
PS417_10985 -1.4 -1.0 NADH:flavin oxidoreductase compare
PS417_25715 -1.4 -3.4 anthranilate phosphoribosyltransferase compare
PS417_00045 -1.4 -0.8 glycerol acyltransferase compare
PS417_13510 -1.4 -1.2 polyketide cyclase compare
PS417_27835 -1.4 -6.3 endoribonuclease compare
PS417_27195 -1.4 -1.1 N-acetylglutamate synthase compare
PS417_22445 -1.4 -2.3 ATP-dependent DNA helicase RuvB compare
PS417_26695 -1.3 -1.1 uracil phosphoribosyltransferase compare
PS417_01560 -1.3 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_06645 -1.3 -6.9 RNA polymerase-associated protein RapA compare
PS417_01575 -1.3 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_07170 -1.3 -2.9 hypothetical protein compare
PS417_22690 -1.3 -2.7 phosphogluconate dehydratase compare
PS417_18425 -1.3 -1.6 sporulation protein compare
PS417_25270 -1.2 -1.7 NrdR family transcriptional regulator compare
PS417_04420 -1.2 -5.4 histidinol dehydrogenase compare
PS417_22450 -1.2 -0.7 ATP-dependent DNA helicase RuvA compare
PS417_08230 -1.2 -2.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_26990 -1.2 -0.5 RNA pyrophosphohydrolase compare
PS417_20650 -1.2 -8.2 hypothetical protein compare
PS417_01850 -1.2 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_03525 -1.2 -1.6 hypothetical protein compare
PS417_26605 -1.2 -0.8 malonate decarboxylase subunit beta compare
PS417_20785 -1.2 -0.7 transcriptional regulator compare
PS417_23375 -1.2 -1.4 cytochrome C oxidase compare
PS417_27865 -1.1 -1.7 LysR family transcriptional regulator compare
PS417_01955 -1.1 -4.2 peptidase compare
PS417_14755 -1.1 -2.0 UV damage repair endonuclease UvdE compare
PS417_02630 -1.1 -2.7 NAD synthetase compare
PS417_08580 -1.1 -3.4 histidine kinase compare
PS417_01095 -1.1 -1.1 amino acid ABC transporter ATP-binding protein compare
PS417_25790 -1.1 -2.3 aminoglycoside phosphotransferase compare
PS417_23370 -1.1 -2.8 protoheme IX farnesyltransferase compare
PS417_06865 -1.1 -2.1 transporter compare
PS417_20660 -1.1 -6.3 hypothetical protein compare
PS417_08190 -1.1 -8.1 membrane protein compare
PS417_13800 -1.1 -1.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_02270 -1.1 -2.8 carbamoyltransferase compare
PS417_00845 -1.1 -1.0 transcriptional regulator compare
PS417_23380 -1.0 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_20725 -1.0 -1.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_21630 -1.0 -1.4 magnesium transporter compare
PS417_20655 -1.0 -5.9 group 1 glycosyl transferase compare
PS417_01570 -1.0 -1.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08225 -1.0 -3.5 acetolactate synthase compare
PS417_26730 -1.0 -0.5 pyrroline-5-carboxylate reductase compare
PS417_09470 -1.0 -1.1 hypothetical protein compare
PS417_23385 -1.0 -5.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_12535 -1.0 -1.8 nitrilase compare
PS417_01735 -1.0 -2.8 ABC transporter permease compare
PS417_28020 -1.0 -2.3 chorismate--pyruvate lyase compare
PS417_08195 -1.0 -6.1 hypothetical protein compare
PS417_04380 -1.0 -0.6 ABC transporter permease compare
PS417_02255 -1.0 -1.4 lipopolysaccharide kinase compare
PS417_15885 -1.0 -1.7 GCN5 family acetyltransferase compare
PS417_02555 -1.0 -4.5 exoribonuclease R compare
PS417_16475 -1.0 -2.2 camphor resistance protein CrcB compare
PS417_11705 -1.0 -2.8 cyclic peptide transporter compare
PS417_19835 -1.0 -0.9 flagellar biosynthesis protein FliS compare
PS417_19675 -1.0 -3.3 chemotaxis protein CheY compare
PS417_08205 -1.0 -3.0 acetyltransferase compare
PS417_26260 -1.0 -1.4 hypothetical protein compare
PS417_02365 -1.0 -2.6 hypothetical protein compare
PS417_21575 -1.0 -3.6 chemotaxis protein compare
PS417_23770 -1.0 -0.6 exodeoxyribonuclease V subunit alpha compare
PS417_08170 -0.9 -3.9 capsular biosynthesis protein compare
PS417_23910 -0.9 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_15890 -0.9 -2.1 RNA polymerase sigma factor compare
PS417_21430 -0.9 -0.6 3-oxoacyl-ACP synthase compare
PS417_24835 -0.9 -3.5 hypothetical protein compare
PS417_07640 -0.9 -2.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_21125 -0.9 -4.7 phosphoadenosine phosphosulfate reductase compare
PS417_27245 -0.9 -1.6 aminotransferase DegT compare
PS417_05830 -0.9 -1.5 hypothetical protein compare
PS417_08245 -0.9 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_11720 -0.9 -3.1 class V aminotransferase compare
PS417_28080 -0.9 -6.3 phosphate ABC transporter permease compare
PS417_21425 -0.9 -1.3 4-amino-4-deoxychorismate lyase compare
PS417_18360 -0.9 -1.4 hypothetical protein compare
PS417_22620 -0.9 -2.8 pyruvate kinase compare
PS417_04270 -0.9 -3.8 ribonuclease G compare
PS417_03970 -0.9 -1.2 1-phosphofructokinase compare
PS417_27535 -0.9 -4.3 chemotaxis protein CheY compare
PS417_23390 -0.9 -4.0 ubiquinol oxidase subunit II compare
PS417_20055 -0.9 -2.0 cob(II)yrinic acid a,c-diamide reductase compare
PS417_28295 -0.9 -1.6 glutamine synthetase compare
PS417_00535 -0.9 -1.2 Holliday junction resolvase compare
PS417_27180 -0.9 -2.1 peroxidase compare
PS417_02950 -0.9 -1.0 tRNA-dihydrouridine synthase B compare
PS417_13305 -0.9 -1.0 hypothetical protein compare
PS417_20665 -0.9 -4.4 hypothetical protein compare
PS417_09605 -0.9 -1.7 glycosyl transferase compare
PS417_28070 -0.9 -2.6 phosphate ABC transporter ATP-binding protein compare
PS417_05695 -0.9 -3.0 transcriptional regulator compare
PS417_12840 -0.9 -2.5 TetR family transcriptional regulator compare
PS417_02485 -0.9 -1.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27595 -0.9 -1.5 recombinase XerC compare
PS417_07560 -0.9 -1.0 universal stress protein UspA compare
PS417_05840 -0.9 -2.4 LuxR family transcriptional regulator compare
PS417_23755 -0.8 -1.2 membrane protein compare
PS417_03785 -0.8 -1.3 pilus assembly protein PilV compare
PS417_03345 -0.8 -3.4 type I secretion protein TolC compare
PS417_27510 -0.8 -2.7 disulfide bond formation protein B compare
PS417_17805 -0.8 -1.4 microcin B17 processing protein McbC compare
PS417_19690 -0.8 -3.6 histidine kinase compare
PS417_22640 -0.8 -2.7 cytochrome C biogenesis protein CcmE compare
PS417_16825 -0.8 -1.8 membrane protein compare
PS417_27005 -0.8 -0.8 membrane protein compare
PS417_11810 -0.8 -1.1 oxidoreductase compare
PS417_04985 -0.8 -3.0 ketosteroid isomerase compare
PS417_26370 -0.8 -1.5 RNA helicase compare
PS417_12220 -0.8 -2.6 hydroxyacylglutathione hydrolase compare
PS417_02475 -0.8 -1.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_28075 -0.8 -3.1 phosphate ABC transporter permease compare
PS417_06770 -0.8 -2.3 multidrug transporter compare
PS417_00455 -0.8 -1.4 hypothetical protein compare
PS417_02880 -0.8 -0.4 copper chaperone compare
PS417_22780 -0.8 -2.3 XRE family transcriptional regulator compare
PS417_07120 -0.8 -2.3 RNA polymerase sigma-H factor compare
PS417_01405 -0.8 -1.8 sugar transporter compare
PS417_26765 -0.8 -3.1 membrane protein compare
PS417_19505 -0.8 -1.3 2,4-diaminobutyrate 4-aminotransferase compare
PS417_14935 -0.8 -2.3 transposase compare
PS417_10810 -0.8 -1.3 hypothetical protein compare
PS417_27675 -0.8 -1.9 xanthine phosphoribosyltransferase compare
PS417_04340 -0.8 -2.5 ribosome hibernation promoting factor HPF compare
PS417_19350 -0.8 -3.1 GTP cyclohydrolase compare
PS417_14125 -0.8 -2.5 molybdenum ABC transporter ATP-binding protein compare
PS417_05550 -0.8 -2.4 amino acid ABC transporter permease compare
PS417_24615 -0.8 -0.6 hypothetical protein compare
PS417_05925 -0.8 -3.2 spermidine/putrescine ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in in planta experiments

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms