Experiment set34S659 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
PS417_08730 +4.1 3.7 cytochrome C compare
PS417_11900 +3.1 4.7 conjugal transfer protein TraR compare
PS417_13445 +2.7 4.5 D-aminopeptidase compare
PS417_07470 +2.4 2.7 hypothetical protein compare
PS417_12515 +2.3 1.9 lactate dehydrogenase compare
PS417_22570 +2.1 1.4 H-NS histone compare
PS417_16370 +2.1 9.5 chemotaxis protein CheY compare
PS417_06365 +2.0 8.0 RNA polymerase sigma factor compare
PS417_27605 +2.0 5.9 hypothetical protein compare
PS417_10720 +1.9 5.3 chemotaxis protein CheY compare
PS417_28265 +1.8 2.3 pyridoxamine kinase compare
PS417_04180 +1.8 6.4 GntR family transcriptional regulator compare
PS417_18370 +1.7 1.4 hypothetical protein compare
PS417_15135 +1.5 1.6 hypothetical protein compare
PS417_15390 +1.5 1.3 hypothetical protein compare
PS417_16160 +1.4 1.5 ABC transporter substrate-binding protein compare
PS417_24885 +1.4 2.7 transcriptional regulator compare
PS417_17105 +1.4 2.1 spore coat protein compare
PS417_09740 +1.4 0.9 RNA polymerase subunit sigma-24 compare
PS417_06040 +1.3 1.8 hypothetical protein compare
PS417_27875 +1.3 4.8 histidine kinase compare
PS417_18235 +1.3 1.6 nitrile hydratase compare
PS417_06500 +1.2 2.1 hypothetical protein compare
PS417_02820 +1.2 2.6 urea ABC transporter ATP-binding protein compare
PS417_05535 +1.2 2.3 Fis family transcriptional regulator compare
PS417_06745 +1.1 1.1 polysaccharide deacetylase compare
PS417_12595 +1.1 3.0 transcriptional regulator compare
PS417_04530 +1.1 2.5 glycerate dehydrogenase compare
PS417_10320 +1.1 1.9 hypothetical protein compare
PS417_04305 +1.1 1.8 aspartate ammonia-lyase compare
PS417_04500 +1.1 1.5 hypothetical protein compare
PS417_07845 +1.1 1.4 transcriptional regulator compare
PS417_27940 +1.0 1.6 type VI secretion protein compare
PS417_14905 +1.0 1.5 C4-dicarboxylate ABC transporter compare
PS417_27610 +1.0 3.8 hypothetical protein compare
PS417_13425 +1.0 1.3 cupin compare
PS417_23015 +1.0 1.1 NGG1p interacting factor 3 protein, NIF3 compare
PS417_04915 +1.0 1.9 glutamine ABC transporter ATP-binding protein compare
PS417_27315 +1.0 1.0 hypothetical protein compare
PS417_24650 +1.0 1.9 membrane protein compare
PS417_19995 +1.0 4.0 Long-chain fatty acid transport protein compare
PS417_02155 +1.0 4.3 chemotaxis protein compare
PS417_13085 +1.0 3.3 FMN-dependent NADH-azoreductase compare
PS417_19800 +1.0 3.6 flagellar motor switch protein FliG compare
PS417_03080 +1.0 2.1 hypothetical protein compare
PS417_22530 +1.0 2.3 hypothetical protein compare
PS417_01105 +1.0 1.5 cystine transporter subunit compare
PS417_21255 +1.0 2.1 hypothetical protein compare
PS417_05025 +1.0 1.0 maleylacetoacetate isomerase compare
PS417_26525 +1.0 4.1 DEAD/DEAH box helicase compare
PS417_20265 +1.0 1.0 transcriptional regulator compare
PS417_24895 +0.9 1.8 hypothetical protein compare
PS417_24030 +0.9 1.4 MFS transporter compare
PS417_16195 +0.9 1.3 AraC family transcriptional regulator compare
PS417_07410 +0.9 2.6 hypothetical protein compare
PS417_19095 +0.9 1.7 hypothetical protein compare
PS417_21360 +0.9 1.2 termination factor Rho compare
PS417_17755 +0.9 2.4 hypothetical protein compare
PS417_16180 +0.9 2.0 MFS transporter compare
PS417_11180 +0.9 2.8 TetR family transcriptional regulator compare
PS417_02710 +0.9 2.5 Urease maturation and nickel insertion protein UreE (from data) compare
PS417_00385 +0.9 0.7 Fur family transcriptional regulator compare
PS417_19045 +0.9 1.2 amino acid:proton symporter compare
PS417_10675 +0.9 0.9 TetR family transcriptional regulator compare
PS417_17945 +0.9 0.8 hypothetical protein compare
PS417_28515 +0.9 2.1 16S rRNA methyltransferase compare
PS417_19805 +0.9 3.3 flagellar M-ring protein FliF compare
PS417_06445 +0.9 1.5 iron-siderophore ABC transporter permease compare
PS417_11885 +0.9 1.9 Inositol transport system sugar-binding protein (from data) compare
PS417_26805 +0.9 1.0 cell division protein FtsE compare
PS417_01620 +0.9 1.4 preprotein translocase subunit SecB compare
PS417_13135 +0.9 2.0 hypothetical protein compare
PS417_23170 +0.9 1.7 FeS assembly protein IscX compare
PS417_17735 +0.8 0.7 LacI family transcriptional regulator compare
PS417_09655 +0.8 3.3 RNA polymerase sigma factor compare
PS417_03075 +0.8 4.8 hypothetical protein compare
PS417_21185 +0.8 4.4 hypothetical protein compare
PS417_13730 +0.8 1.3 hypothetical protein compare
PS417_26625 +0.8 2.7 hypothetical protein compare
PS417_19135 +0.8 3.1 DeoR faimly transcriptional regulator compare
PS417_08015 +0.8 2.2 haloacid dehalogenase compare
PS417_13850 +0.8 1.3 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_14210 +0.8 1.6 hypothetical protein compare
PS417_11075 +0.8 2.0 hydroxypyruvate isomerase compare
PS417_21850 +0.8 1.2 LysR family transcriptional regulator compare
PS417_22660 +0.8 3.1 hypothetical protein compare
PS417_19055 +0.8 3.3 ArsR family transcriptional regulator compare
PS417_16875 +0.8 2.9 signal peptidase compare
PS417_02680 +0.8 3.2 hypothetical protein compare
PS417_23155 +0.8 2.9 pilus assembly protein PilW compare
PS417_15365 +0.8 2.4 diaminopimelate epimerase compare
PS417_11300 +0.8 3.5 general secretion pathway protein GspE compare
PS417_21375 +0.8 1.3 ADP-ribosylglycohydrolase compare
PS417_27140 +0.8 2.3 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_19560 +0.8 4.6 amino acid ABC transporter substrate-binding protein compare
PS417_20825 +0.8 1.5 drug:proton antiporter compare
PS417_28205 +0.8 2.3 transporter compare
PS417_02740 +0.8 0.8 LysR family transcriptional regulator compare
PS417_00465 +0.8 1.9 hypothetical protein compare
PS417_20105 +0.8 4.7 glycosyl transferase compare
PS417_01005 +0.8 2.5 methionine ABC transporter substrate-binding protein compare
PS417_19740 +0.8 3.8 flagellar biosynthesis protein flip compare
PS417_08510 +0.8 0.6 LysR family transcriptional regulator compare
PS417_07615 +0.8 3.0 TetR family transcriptional regulator compare
PS417_07875 +0.8 0.9 hypothetical protein compare
PS417_00075 +0.8 0.9 hypothetical protein compare
PS417_02210 +0.7 4.7 diguanylate cyclase compare
PS417_01875 +0.7 0.8 polyhydroxyalkanoic acid system protein compare
PS417_14075 +0.7 1.6 hypothetical protein compare
PS417_10875 +0.7 2.1 AraC family transcriptional regulator compare
PS417_16675 +0.7 1.3 hypothetical protein compare
PS417_22770 +0.7 4.1 SAM-dependent methyltransferase compare
PS417_12650 +0.7 2.1 magnesium transporter compare
PS417_05325 +0.7 1.3 fimbrial protein compare
PS417_20375 +0.7 2.1 hypothetical protein compare
PS417_24460 +0.7 1.2 hypothetical protein compare
PS417_21340 +0.7 1.5 short-chain dehydrogenase compare
PS417_17215 +0.7 1.0 peptidylprolyl isomerase compare
PS417_25145 +0.7 1.7 hypothetical protein compare
PS417_13140 +0.7 0.9 oxidoreductase compare
PS417_06685 +0.7 0.6 beta-ketoadipyl CoA thiolase compare
PS417_07940 +0.7 1.8 hypothetical protein compare
PS417_02060 +0.7 1.7 FAD-dependent oxidoreductase compare
PS417_21220 +0.7 2.2 acetyl-CoA acetyltransferase compare
PS417_11540 +0.7 1.1 NAD synthetase compare
PS417_27490 +0.7 1.1 hypothetical protein compare
PS417_07400 +0.7 1.5 hypothetical protein compare
PS417_01270 +0.7 1.0 iron ABC transporter substrate-binding protein compare
PS417_00175 +0.7 1.0 CigR compare
PS417_22550 +0.7 1.8 ATP-binding protein compare
PS417_00780 +0.7 1.6 hypothetical protein compare
PS417_19020 +0.7 1.3 dimethylmenaquinone methyltransferase compare
PS417_03560 +0.7 0.7 GTP-binding protein compare
PS417_09325 +0.7 1.1 peptidase S41 compare
PS417_26655 +0.7 1.3 chemotaxis protein compare
PS417_23540 +0.7 2.2 CreA compare
PS417_20250 +0.6 2.8 copper resistance protein CopC compare
PS417_27460 +0.6 1.0 hypothetical protein compare
PS417_17440 +0.6 0.7 beta-lactamase compare
PS417_10490 +0.6 1.6 delta-aminolevulinic acid dehydratase compare
PS417_25280 +0.6 1.1 methyltransferase compare
PS417_03110 +0.6 3.5 pilus assembly protein CpaB compare
PS417_12460 +0.6 2.4 hypothetical protein compare
PS417_12655 +0.6 3.2 methionine aminopeptidase compare
PS417_21025 +0.6 2.8 PEP synthetase regulatory protein compare
PS417_14300 +0.6 2.0 aspartate:proton symporter compare
PS417_22175 +0.6 1.1 amino acid transporter LysE compare
PS417_14165 +0.6 2.3 ArsR family transcriptional regulator compare
PS417_18020 +0.6 1.4 hypothetical protein compare
PS417_07455 +0.6 1.4 glutamine amidotransferase compare
PS417_14220 +0.6 1.4 aldehyde-activating protein compare
PS417_23460 +0.6 2.5 LysR family transcriptional regulator compare
PS417_01920 +0.6 0.6 ATP-dependent protease subunit HslV compare
PS417_16350 +0.6 1.4 competence protein ComEC compare
PS417_11360 +0.6 1.6 energy transducer TonB compare
PS417_02115 +0.6 1.2 acyltransferase compare
PS417_19730 +0.6 2.9 flagellar biosynthesis protein FliR compare
PS417_13940 +0.6 2.0 racemase compare
PS417_01375 +0.6 0.9 hypothetical protein compare
PS417_09695 +0.6 1.2 hydrolase compare
PS417_11570 +0.6 2.0 ABC transporter permease compare
PS417_03070 +0.6 3.3 LuxR family transcriptional regulator compare
PS417_25360 +0.6 2.9 Isochorismatase compare
PS417_16240 +0.6 1.3 ABC transporter ATP-binding protein compare
PS417_11400 +0.6 0.8 phosphoglycerate mutase compare
PS417_27810 +0.6 2.9 ribonuclease PH compare
PS417_19950 +0.6 2.4 ATP-dependent DNA helicase RecQ compare
PS417_28250 +0.6 3.3 cell wall assembly protein compare
PS417_19335 +0.6 1.5 isochorismatase compare
PS417_15915 +0.6 1.1 hypothetical protein compare
PS417_17930 +0.6 1.4 aldehyde dehydrogenase compare
PS417_03510 +0.6 2.4 type III secretion system negative regulatory protein RspV compare
PS417_11510 +0.6 1.1 AraC family transcriptional regulator compare
PS417_28145 +0.6 1.2 AraC family transcriptional regulator compare
PS417_00905 +0.6 1.3 histidine kinase compare
PS417_10265 +0.6 1.4 peptidase compare
PS417_02960 +0.6 0.9 ribosomal protein L11 methyltransferase compare
PS417_17320 +0.6 0.8 phenylhydantoinase compare
PS417_03655 +0.6 1.0 short-chain dehydrogenase compare
PS417_12700 +0.6 1.8 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) compare
PS417_05940 +0.6 1.1 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_08930 +0.6 2.0 hypothetical protein compare
PS417_06020 +0.6 2.7 membrane protein compare
PS417_17840 +0.6 1.6 betaine-aldehyde dehydrogenase compare
PS417_27505 +0.6 1.7 transcriptional regulator compare
PS417_02160 +0.6 0.8 hypothetical protein compare
PS417_05315 +0.6 1.6 membrane protein compare
PS417_03085 +0.6 2.2 type II secretion system protein F compare
PS417_05825 +0.6 1.2 cytochrome D ubiquinol oxidase subunit II compare
PS417_03065 +0.6 2.4 peptidase A24 compare
PS417_07205 +0.6 2.5 LysR family transcriptional regulator compare
PS417_24370 +0.6 0.5 (2Fe-2S)-binding protein compare
PS417_26190 +0.6 1.5 sarcosine oxidase subunit beta compare
PS417_18460 +0.6 1.2 transcriptional regulator compare
PS417_00635 +0.6 0.9 sulfonate ABC transporter ATP-binding protein compare
PS417_26400 +0.6 1.8 metal-dependent hydrolase compare
PS417_05040 +0.6 1.1 amino acid dehydrogenase compare
PS417_14620 +0.6 2.1 hypothetical protein compare
PS417_07950 +0.6 1.6 MFS transporter compare
PS417_03400 +0.6 2.0 D-alanine--D-alanine ligase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in in planta experiments

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms