Experiment set34S658 for Pseudomonas simiae WCS417

200 most important genes:

gene	name	fitness	t score	description
PS417_27040		-3.7	-3.6	3-phosphoglycerate dehydrogenase
PS417_16005		-3.7	-3.4	ATPase
PS417_21625		-3.5	-1.2	DNA-binding protein
PS417_18600		-3.1	-2.2	isopropylmalate isomerase
PS417_11440		-2.8	-1.9	hypothetical protein
PS417_13510		-2.6	-1.2	polyketide cyclase
PS417_23805		-2.4	-3.6	acetolactate synthase 3 regulatory subunit
PS417_23810		-2.4	-7.9	acetolactate synthase 3 catalytic subunit
PS417_08540		-2.3	-1.5	RNA helicase
PS417_25985		-2.3	-1.7	dethiobiotin synthetase
PS417_08230		-2.3	-2.3	lipopolysaccharide biosynthesis protein RfbH
PS417_01575		-2.2	-3.3	1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data)
PS417_18595		-2.2	-3.6	3-isopropylmalate dehydratase
PS417_18530		-2.2	-5.1	O-succinylhomoserine sulfhydrylase
PS417_23800		-2.1	-7.7	ketol-acid reductoisomerase
PS417_23915		-2.1	-3.6	pantoate--beta-alanine ligase
PS417_23545		-2.0	-1.3	gamma-glutamyl kinase
PS417_27585		-2.0	-1.3	diaminopimelate epimerase
PS417_02975		-2.0	-2.3	3-dehydroquinate dehydratase
PS417_01565		-1.8	-3.9	imidazole glycerol phosphate synthase
PS417_26745		-1.8	-5.2	methionine biosynthesis protein MetW
PS417_23995		-1.8	-0.8	preprotein translocase subunit SecG
PS417_09245		-1.8	-1.5	recombinase RdgC
PS417_18585		-1.8	-4.4	3-isopropylmalate dehydrogenase
PS417_08200		-1.8	-4.0	hypothetical protein
PS417_02560		-1.8	-1.5	23S rRNA methyltransferase
PS417_25725		-1.7	-10.4	anthranilate synthase component I
PS417_26985		-1.6	-3.0	phosphoenolpyruvate-protein phosphotransferase
PS417_03310		-1.6	-5.6	carbonate dehydratase
PS417_06540		-1.6	-1.1	membrane protein
PS417_26740		-1.6	-5.8	homoserine acetyltransferase
PS417_00650		-1.6	-0.7	LysR family transcriptional regulator
PS417_00755		-1.6	-0.7	biofilm PGA synthesis protein PgaD
PS417_04080		-1.6	-2.6	peptide ABC transporter substrate-binding protein
PS417_04415		-1.5	-6.1	ATP phosphoribosyltransferase (EC 2.4.2.17) (from data)
PS417_22875		-1.5	-1.4	hypothetical protein
PS417_11615		-1.5	-1.4	urea ABC transporter ATP-binding protein
PS417_18395		-1.5	-2.4	D-ribose ABC transporter, permease component RbsC (from data)
PS417_17705		-1.5	-3.0	LacI family transcriptional regulator
PS417_28070		-1.5	-4.2	phosphate ABC transporter ATP-binding protein
PS417_25720		-1.5	-4.8	anthranilate synthase component II
PS417_19675		-1.5	-2.7	chemotaxis protein CheY
PS417_05595		-1.5	-5.5	ornithine carbamoyltransferase
PS417_26890		-1.5	-4.8	dihydroxy-acid dehydratase
PS417_24500		-1.5	-2.2	DEAD/DEAH box helicase
PS417_08245		-1.5	-1.2	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase
PS417_13620		-1.5	-1.1	thermostable hemolysin
PS417_05840		-1.5	-2.4	LuxR family transcriptional regulator
PS417_15520		-1.4	-2.9	hypothetical protein
PS417_09210		-1.4	-1.3	TetR family transcriptional regulator
PS417_17405		-1.4	-2.0	AraC family transcriptional regulator
PS417_25650		-1.4	-1.4	anhydro-N-acetylmuramic acid kinase
PS417_08205		-1.4	-3.2	acetyltransferase
PS417_08190		-1.4	-9.8	membrane protein
PS417_16990		-1.4	-4.6	acyl-CoA dehydrogenase
PS417_27155		-1.4	-1.1	aliphatic sulfonates transport ATP-binding subunit
PS417_02510		-1.4	-3.4	ATP phosphoribosyltransferase regulatory subunit
PS417_16715		-1.4	-1.4	DoxX family protein
PS417_08350		-1.3	-2.8	preprotein translocase subunit TatD
PS417_25120		-1.3	-2.7	capsular biosynthesis protein
PS417_13455		-1.3	-2.1	alkaline proteinase inhibitor
PS417_08225		-1.3	-2.3	acetolactate synthase
PS417_16475		-1.3	-1.9	camphor resistance protein CrcB
PS417_16000		-1.3	-1.7	chemotaxis protein CheY
PS417_18560		-1.3	-3.7	N-(5'-phosphoribosyl)anthranilate isomerase
PS417_18495		-1.3	-2.2	hypothetical protein
PS417_27870		-1.3	-0.9	ATP-dependent DNA helicase RecG
PS417_26370		-1.3	-2.8	RNA helicase
PS417_20670		-1.3	-4.5	glycosyl transferase family 2
PS417_21630		-1.3	-1.2	magnesium transporter
PS417_23910		-1.3	-3.6	3-methyl-2-oxobutanoate hydroxymethyltransferase
PS417_08435		-1.3	-1.2	pilus assembly protein PilZ
PS417_26240		-1.2	-1.5	N-methylproline demethylase
PS417_05975		-1.2	-0.6	chemotaxis protein CheW
PS417_05365		-1.2	-1.5	FAD-binding protein
PS417_07560		-1.2	-0.6	universal stress protein UspA
PS417_23900		-1.2	-5.2	poly(A) polymerase
PS417_07985		-1.2	-1.3	AbrB family transcriptional regulator
PS417_22840		-1.2	-0.9	tRNA-Met
PS417_04270		-1.2	-5.2	ribonuclease G
PS417_06375		-1.2	-0.4	deoxycytidine triphosphate deaminase
PS417_27435		-1.2	-4.1	polyphosphate kinase
PS417_12695		-1.2	-3.8	mannitol dehydrogenase
PS417_01145		-1.2	-0.8	taurine transporter ATP-binding subunit
PS417_08580		-1.2	-3.4	histidine kinase
PS417_01400		-1.2	-1.2	hypothetical protein
PS417_25275		-1.2	-2.6	hypothetical protein
PS417_06445		-1.2	-1.3	iron-siderophore ABC transporter permease
PS417_15585		-1.2	-2.9	DNA repair nucleotidyltransferase
PS417_20880		-1.2	-1.7	GntR family transcriptional regulator
PS417_27910		-1.2	-2.1	PppA
PS417_08220		-1.2	-0.6	epimerase
PS417_24710		-1.2	-2.9	lipoprotein
PS417_20650		-1.1	-6.9	hypothetical protein
PS417_09470		-1.1	-0.9	hypothetical protein
PS417_26715		-1.1	-3.2	peptidase P60
PS417_21870		-1.1	-2.0	glycerophosphodiester phosphodiesterase
PS417_18730		-1.1	-1.2	ABC transporter permease
PS417_04170		-1.1	-2.9	stringent starvation protein A
PS417_17445		-1.1	-2.1	sulfur oxidation protein SoxZ
PS417_28080		-1.1	-6.7	phosphate ABC transporter permease
PS417_02950		-1.1	-2.1	tRNA-dihydrouridine synthase B
PS417_20665		-1.1	-5.0	hypothetical protein
PS417_04865		-1.1	-2.4	molybdenum cofactor biosynthesis protein MoaC
PS417_16535		-1.1	-2.5	NUDIX hydrolase
PS417_03935		-1.1	-1.0	N-acetyl-anhydromuranmyl-L-alanine amidase
PS417_21695		-1.1	-1.8	succinylglutamate-semialdehyde dehydrogenase
PS417_01115		-1.1	-1.3	serine acetyltransferase
PS417_00085		-1.1	-1.2	16S rRNA methyltransferase
PS417_11950		-1.1	-1.1	hypothetical protein
PS417_01855		-1.1	-1.5	phosphoribosyl-AMP cyclohydrolase
PS417_08195		-1.1	-4.9	hypothetical protein
PS417_04365		-1.1	-0.4	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
PS417_19690		-1.1	-3.5	histidine kinase
PS417_15890		-1.1	-1.5	RNA polymerase sigma factor
PS417_02005		-1.0	-5.6	glutamate synthase
PS417_17035		-1.0	-0.8	Cro/Cl family transcriptional regulator
PS417_12375		-1.0	-1.4	serine/threonine protein phosphatase
PS417_23385		-1.0	-5.1	cytochrome o ubiquinol oxidase subunit I
PS417_20525		-1.0	-3.9	LysR family transcriptional regulator
PS417_21210		-1.0	-1.1	amidotransferase
PS417_02630		-1.0	-1.4	NAD synthetase
PS417_07165		-1.0	-2.2	dihydrodipicolinate synthase
PS417_23150		-1.0	-1.1	Cro/Cl family transcriptional regulator
PS417_23855		-1.0	-1.2	ABC transporter substrate-binding protein
PS417_17645		-1.0	-1.2	RND transporter
PS417_15285		-1.0	-0.7	type VI secretion protein
PS417_04420		-1.0	-4.5	histidinol dehydrogenase
PS417_17160		-1.0	-1.8	1-aminocyclopropane-1-carboxylate deaminase
PS417_20160		-1.0	-2.9	cysteine synthase
PS417_06645		-1.0	-4.4	RNA polymerase-associated protein RapA
PS417_01290		-1.0	-1.2	ADP-ribose diphosphatase
PS417_07850		-1.0	-3.3	hypothetical protein
PS417_20645		-1.0	-5.8	membrane protein
PS417_23110		-1.0	-4.6	2-isopropylmalate synthase
PS417_10050		-1.0	-1.7	hypothetical protein
PS417_26725		-1.0	-2.1	hypothetical protein
PS417_00370		-1.0	-0.7	hypothetical protein
PS417_28075		-1.0	-4.2	phosphate ABC transporter permease
PS417_25715		-1.0	-1.7	anthranilate phosphoribosyltransferase
PS417_23370		-1.0	-2.3	protoheme IX farnesyltransferase
PS417_20660		-1.0	-4.1	hypothetical protein
PS417_04440		-1.0	-1.2	hypoxanthine-guanine phosphoribosyltransferase
PS417_13205		-0.9	-1.2	isochorismate-pyruvate lyase
PS417_00825		-0.9	-1.7	recombinase RecF
PS417_01580		-0.9	-0.8	imidazole glycerol phosphate synthase
PS417_23170		-0.9	-1.2	FeS assembly protein IscX
PS417_00900		-0.9	-1.2	4-aminobutyrate aminotransferase
PS417_22195		-0.9	-2.9	peptidase
PS417_22570		-0.9	-0.3	H-NS histone
PS417_24835		-0.9	-3.1	hypothetical protein
PS417_23580		-0.9	-0.8	peptidylprolyl isomerase
PS417_04225		-0.9	-2.0	conjugal transfer protein TraR
PS417_18250		-0.9	-2.4	chemotaxis protein
PS417_08170		-0.9	-2.8	capsular biosynthesis protein
PS417_02955		-0.9	-2.9	hypothetical protein
PS417_01715		-0.9	-0.8	hypothetical protein
PS417_23375		-0.9	-1.0	cytochrome C oxidase
PS417_08430		-0.9	-3.5	phospho-2-dehydro-3-deoxyheptonate aldolase
PS417_26465		-0.9	-1.4	hypothetical protein
PS417_23390		-0.9	-3.2	ubiquinol oxidase subunit II
PS417_18040		-0.9	-1.0	general secretion pathway protein GspN
PS417_22620		-0.9	-2.1	pyruvate kinase
PS417_20655		-0.9	-3.6	group 1 glycosyl transferase
PS417_28440		-0.9	-2.5	hypothetical protein
PS417_15095		-0.9	-1.8	hypothetical protein
PS417_13855		-0.9	-0.6	acetyl-CoA acetyltransferase
PS417_05165		-0.9	-1.6	cytosol aminopeptidase
PS417_18025		-0.9	-1.5	cytochrome C
PS417_22895		-0.9	-2.7	tyrosine recombinase XerD
PS417_22535		-0.9	-2.8	ornithine acetyltransferase
PS417_12855		-0.9	-1.7	3-phosphoshikimate 1-carboxyvinyltransferase
PS417_19360		-0.8	-1.5	hypothetical protein
PS417_01875		-0.8	-1.1	polyhydroxyalkanoic acid system protein
PS417_21575		-0.8	-3.2	chemotaxis protein
PS417_12220		-0.8	-2.3	hydroxyacylglutathione hydrolase
PS417_27510		-0.8	-2.4	disulfide bond formation protein B
PS417_16520		-0.8	-1.0	cold-shock protein
PS417_00705		-0.8	-0.6	MarR family transcriptional regulator
PS417_13175		-0.8	-0.8	iron transporter
PS417_01300		-0.8	-1.8	thioesterase
PS417_16320		-0.8	-0.8	protein tyrosine phosphatase
PS417_00535		-0.8	-1.4	Holliday junction resolvase
PS417_25710		-0.8	-0.5	indole-3-glycerol-phosphate synthase
PS417_07640		-0.8	-1.6	glyceraldehyde-3-phosphate dehydrogenase
PS417_18425		-0.8	-0.9	sporulation protein
PS417_25645		-0.8	-2.1	peptidase M23
PS417_08650		-0.8	-1.5	transcriptional regulator
PS417_00845		-0.8	-0.9	transcriptional regulator
PS417_10275		-0.8	-1.3	histidine kinase
PS417_01735		-0.8	-1.7	ABC transporter permease
PS417_02000		-0.8	-4.3	glutamate synthase
PS417_14065		-0.8	-2.3	UTP--glucose-1-phosphate uridylyltransferase
PS417_19350		-0.8	-1.8	GTP cyclohydrolase
PS417_28220		-0.8	-1.1	LysR family transcriptional regulator
PS417_04685		-0.8	-2.3	histidine kinase
PS417_21495		-0.8	-2.0	lipoprotein
PS417_05900		-0.8	-1.4	TetR family transcriptional regulator
PS417_16125		-0.8	-2.1	AraC family transcriptional regulator
PS417_00375		-0.8	-1.1	membrane protein

Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in in planta experiments

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms