Experiment set34S658 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
PS417_06850 +4.0 2.4 methanol dehydrogenase compare
PS417_17945 +3.7 4.3 hypothetical protein compare
PS417_11900 +3.5 3.5 conjugal transfer protein TraR compare
PS417_27605 +3.4 3.7 hypothetical protein compare
PS417_14590 +2.9 2.6 LysR family transcriptional regulator compare
PS417_27875 +2.9 4.1 histidine kinase compare
PS417_11820 +2.6 1.3 histidine kinase compare
PS417_16045 +2.5 1.6 acyl-CoA dehydrogenase compare
PS417_15655 +2.5 1.4 hypothetical protein compare
PS417_01915 +2.3 0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_10720 +2.1 4.0 chemotaxis protein CheY compare
PS417_15540 +2.1 4.0 NUDIX hydrolase compare
PS417_20715 +2.0 1.8 cytochrome Cbb3 compare
PS417_19270 +2.0 2.2 hypothetical protein compare
PS417_17875 +2.0 1.6 FAD-dependent oxidoreductase compare
PS417_20985 +2.0 1.1 porin compare
PS417_20105 +2.0 7.9 glycosyl transferase compare
PS417_16415 +1.9 1.5 tRNA 2-thiocytidine biosynthesis protein TtcA compare
PS417_27800 +1.9 1.2 exodeoxyribonuclease III compare
PS417_16980 +1.9 1.6 exonuclease III compare
PS417_06365 +1.9 7.0 RNA polymerase sigma factor compare
PS417_08410 +1.8 1.9 hypothetical protein compare
PS417_18310 +1.8 0.8 hypothetical protein compare
PS417_23770 +1.7 1.7 exodeoxyribonuclease V subunit alpha compare
PS417_11885 +1.7 2.9 Inositol transport system sugar-binding protein (from data) compare
PS417_15875 +1.7 1.7 LuxR family transcriptional regulator compare
PS417_08155 +1.7 1.8 integration host factor subunit beta compare
PS417_04375 +1.7 1.4 ABC transporter ATP-binding protein compare
PS417_17105 +1.7 3.6 spore coat protein compare
PS417_18635 +1.7 1.5 4-hydroxybenzoyl-CoA thioesterase compare
PS417_24155 +1.6 1.1 ATP-binding protein compare
PS417_00545 +1.6 2.2 hypothetical protein compare
PS417_07710 +1.6 2.2 membrane protein compare
PS417_18265 +1.6 1.5 AsnC family transcriptional regulator compare
PS417_02815 +1.6 3.1 urea ABC transporter ATP-binding protein compare
PS417_25315 +1.6 3.5 membrane protein compare
PS417_03900 +1.6 1.5 type II secretion system protein F compare
PS417_27075 +1.6 1.0 thiol-disulfide isomerase compare
PS417_17215 +1.5 1.8 peptidylprolyl isomerase compare
PS417_07655 +1.5 2.8 glycerophosphodiester phosphodiesterase compare
PS417_09545 +1.5 2.6 aldehyde-activating protein compare
PS417_01605 +1.5 0.9 phosphoglycerate mutase compare
PS417_10185 +1.5 1.9 hypothetical protein compare
PS417_05535 +1.5 2.3 Fis family transcriptional regulator compare
PS417_26235 +1.5 2.7 (Fe-S)-binding protein compare
PS417_19825 +1.5 10.0 ATPase AAA compare
PS417_04380 +1.5 1.0 ABC transporter permease compare
PS417_16395 +1.5 1.1 arsenate reductase compare
PS417_18020 +1.5 3.2 hypothetical protein compare
PS417_16370 +1.5 5.9 chemotaxis protein CheY compare
PS417_03090 +1.5 2.8 type II secretion system protein F compare
PS417_26335 +1.5 1.6 BetI family transcriptional regulator compare
PS417_20775 +1.4 2.2 coproporphyrinogen III oxidase compare
PS417_15100 +1.4 2.5 BatB protein compare
PS417_09735 +1.4 1.2 hypothetical protein compare
PS417_04385 +1.4 0.9 organic solvent ABC transporter substrate-binding protein compare
PS417_19240 +1.4 1.6 peptidase M42 compare
PS417_07825 +1.4 2.8 transposase compare
PS417_20705 +1.4 0.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_07470 +1.4 1.4 hypothetical protein compare
PS417_23825 +1.4 2.0 penicillin-binding protein compare
PS417_17480 +1.4 1.6 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_23490 +1.3 1.2 dihydrofolate reductase compare
PS417_04985 +1.3 2.7 ketosteroid isomerase compare
PS417_07750 +1.3 1.4 hypothetical protein compare
PS417_19335 +1.3 1.7 isochorismatase compare
PS417_22115 +1.3 2.5 transcriptional regulator compare
PS417_19560 +1.3 5.9 amino acid ABC transporter substrate-binding protein compare
PS417_22210 +1.3 1.9 AraC family transcriptional regulator compare
PS417_09010 +1.3 2.4 phosphohistidine phosphatase compare
PS417_05050 +1.3 1.2 carboxymethylenebutenolidase compare
PS417_22175 +1.3 2.2 amino acid transporter LysE compare
PS417_13960 +1.3 2.5 MFS transporter compare
PS417_26655 +1.3 1.4 chemotaxis protein compare
PS417_16275 +1.3 1.7 hypothetical protein compare
PS417_09930 +1.3 2.5 hypothetical protein compare
PS417_06675 +1.2 2.0 ATP-dependent helicase compare
PS417_18360 +1.2 3.2 hypothetical protein compare
PS417_04500 +1.2 1.2 hypothetical protein compare
PS417_22705 +1.2 1.5 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_20090 +1.2 2.8 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_15640 +1.2 1.5 DNA methylase compare
PS417_28265 +1.2 1.4 pyridoxamine kinase compare
PS417_15780 +1.2 1.5 membrane protein compare
PS417_05475 +1.2 2.7 arginase compare
PS417_18105 +1.2 1.7 iron-dicitrate transporter substrate-binding subunit compare
PS417_01510 +1.2 1.3 hypothetical protein compare
PS417_20095 +1.2 3.8 hypothetical protein compare
PS417_14745 +1.2 2.5 hypothetical protein compare
PS417_01815 +1.2 4.4 peptide ABC transporter ATP-binding protein compare
PS417_04180 +1.2 2.5 GntR family transcriptional regulator compare
PS417_18765 +1.2 3.0 hypothetical protein compare
PS417_18145 +1.2 1.4 histidine kinase compare
PS417_10870 +1.1 2.1 GABA permease compare
PS417_08685 +1.1 2.0 flagellar hook-length control protein FliK compare
PS417_24885 +1.1 2.8 transcriptional regulator compare
PS417_00180 +1.1 1.1 tryptophan synthase subunit alpha compare
PS417_06930 +1.1 1.9 carnitine dehydratase compare
PS417_03200 +1.1 1.6 ArsR family transcriptional regulator compare
PS417_19995 +1.1 2.1 Long-chain fatty acid transport protein compare
PS417_08045 +1.1 1.4 uracil permease compare
PS417_03095 +1.1 4.2 ATPase compare
PS417_10105 +1.1 1.6 hypothetical protein compare
PS417_12055 +1.1 3.9 xylitol ABC transporter, substrate-binding component (from data) compare
PS417_24615 +1.1 0.8 hypothetical protein compare
PS417_10675 +1.1 0.9 TetR family transcriptional regulator compare
PS417_11000 +1.1 1.7 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
PS417_15710 +1.1 1.0 nitrate reductase compare
PS417_21840 +1.1 1.5 chemotaxis protein compare
PS417_05445 +1.1 1.7 DNA mismatch repair protein MutT compare
PS417_09445 +1.1 0.9 antibiotic biosynthesis monooxygenase compare
PS417_05560 +1.1 2.2 ABC transporter compare
PS417_24030 +1.1 2.5 MFS transporter compare
PS417_02870 +1.1 2.7 TonB-dependent receptor compare
PS417_03065 +1.0 3.9 peptidase A24 compare
PS417_24830 +1.0 2.6 GNAT family acetyltransferase compare
PS417_18775 +1.0 2.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
PS417_03105 +1.0 2.2 secretin compare
PS417_22610 +1.0 3.2 pilus assembly protein PilZ compare
PS417_21045 +1.0 2.2 cysteine synthase compare
PS417_27795 +1.0 0.2 orotate phosphoribosyltransferase compare
PS417_23085 +1.0 2.4 permease compare
PS417_09085 +1.0 0.8 hypothetical protein compare
PS417_22015 +1.0 3.3 hypothetical protein compare
PS417_02070 +1.0 1.1 membrane protein compare
PS417_11790 +1.0 1.0 ABC transporter substrate-binding protein compare
PS417_07410 +1.0 1.8 hypothetical protein compare
PS417_18225 +1.0 3.9 phenol degradation protein meta compare
PS417_14540 +1.0 1.6 cytochrome C oxidase subunit III compare
PS417_18270 +1.0 1.8 alcohol dehydrogenase compare
PS417_24510 +0.9 2.4 AsnC family transcriptional regulator compare
PS417_00345 +0.9 0.6 copper-binding protein compare
PS417_27640 +0.9 0.6 TetR family transcriptional regulator compare
PS417_03050 +0.9 5.2 hypothetical protein compare
PS417_09960 +0.9 2.4 hypothetical protein compare
PS417_27610 +0.9 2.0 hypothetical protein compare
PS417_01650 +0.9 1.8 chorismate mutase compare
PS417_03070 +0.9 4.4 LuxR family transcriptional regulator compare
PS417_27320 +0.9 3.1 hemolysin secretion protein D compare
PS417_15250 +0.9 3.2 DNA repair protein compare
PS417_06530 +0.9 1.3 membrane protein compare
PS417_01200 +0.9 1.3 phosphoesterase compare
PS417_03060 +0.9 4.7 pilus assembly protein TadE compare
PS417_12945 +0.9 1.4 sulfonate ABC transporter ATP-binding protein compare
PS417_18160 +0.9 2.2 YeeE/YedE compare
PS417_19285 +0.9 1.1 ankyrin compare
PS417_03115 +0.9 3.4 pilus assembly protein compare
PS417_14755 +0.9 1.2 UV damage repair endonuclease UvdE compare
PS417_12400 +0.9 2.1 oxidoreductase compare
PS417_02225 +0.9 0.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_19140 +0.9 1.5 TenA family transcriptional regulator compare
PS417_15230 +0.9 1.8 4-hydroxyacetophenone monooxygenase compare
PS417_10425 +0.9 1.5 hypothetical protein compare
PS417_09140 +0.9 2.7 biopolymer transporter ExbB compare
PS417_20170 +0.9 1.5 hypothetical protein compare
PS417_01760 +0.9 2.3 imidazolonepropionase compare
PS417_08320 +0.9 1.5 metal-chelation protein CHAD compare
PS417_19975 +0.9 1.7 hypothetical protein compare
PS417_27315 +0.9 0.7 hypothetical protein compare
PS417_26605 +0.8 0.7 malonate decarboxylase subunit beta compare
PS417_09635 +0.8 2.4 mannose-1-phosphate guanylyltransferase compare
PS417_15770 +0.8 1.1 pyridoxine 5'-phosphate oxidase compare
PS417_07615 +0.8 3.3 TetR family transcriptional regulator compare
PS417_05970 +0.8 5.0 chemotaxis protein CheR compare
PS417_12060 +0.8 2.4 xylitol ABC transporter, permease component (from data) compare
PS417_19400 +0.8 1.7 amino acid transporter LysE compare
PS417_17980 +0.8 2.4 ABC transporter permease compare
PS417_23625 +0.8 1.6 LysR family transcriptional regulator compare
PS417_00450 +0.8 2.3 chemotaxis protein CheY compare
PS417_25380 +0.8 1.1 hypothetical protein compare
PS417_05135 +0.8 2.8 nucleoid-associated protein compare
PS417_11110 +0.8 3.9 xylose isomerase compare
PS417_21555 +0.8 4.5 flagellar hook protein FlgE compare
PS417_06620 +0.8 1.7 hypothetical protein compare
PS417_18940 +0.8 1.7 LysR family transcriptional regulator compare
PS417_20220 +0.8 2.2 membrane protein compare
PS417_18235 +0.8 2.3 nitrile hydratase compare
PS417_18435 +0.8 2.0 hypothetical protein compare
PS417_20940 +0.8 2.0 invasion protein IagB compare
PS417_02800 +0.8 1.4 acetyltransferase compare
PS417_22550 +0.8 2.3 ATP-binding protein compare
PS417_03110 +0.8 2.7 pilus assembly protein CpaB compare
PS417_13655 +0.8 1.0 xylulose kinase compare
PS417_24320 +0.8 1.3 large-conductance mechanosensitive channel compare
PS417_18845 +0.8 1.9 peptidase compare
PS417_07845 +0.8 1.9 transcriptional regulator compare
PS417_08135 +0.8 0.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25225 +0.8 1.6 MFS transporter compare
PS417_24135 +0.8 1.8 hypothetical protein compare
PS417_11075 +0.8 1.9 hydroxypyruvate isomerase compare
PS417_01965 +0.8 0.8 fimbriae biosynthesis protein compare
PS417_12175 +0.8 2.0 peptide ABC transporter permease compare
PS417_18920 +0.8 1.1 hypothetical protein compare
PS417_07140 +0.8 1.2 peptidase M48 compare
PS417_22670 +0.8 2.6 AraC family transcriptional regulator compare
PS417_26525 +0.8 2.7 DEAD/DEAH box helicase compare
PS417_01235 +0.8 3.1 cell division protein Fic compare
PS417_12870 +0.8 1.5 enoyl-CoA hydratase compare
PS417_03510 +0.8 1.7 type III secretion system negative regulatory protein RspV compare
PS417_23060 +0.8 1.5 aminoglycoside phosphotransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in in planta experiments

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms