Experiment set34S657 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_02560 -3.4 -2.3 23S rRNA methyltransferase compare
PS417_03465 -3.3 -1.9 type III secretion protein compare
PS417_16005 -3.0 -2.3 ATPase compare
PS417_00045 -2.9 -1.0 glycerol acyltransferase compare
PS417_13510 -2.9 -1.4 polyketide cyclase compare
PS417_23805 -2.8 -5.0 acetolactate synthase 3 regulatory subunit compare
PS417_23375 -2.8 -2.0 cytochrome C oxidase compare
PS417_21480 -2.8 -1.5 23S rRNA pseudouridylate synthase compare
PS417_12855 -2.8 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18595 -2.7 -3.9 3-isopropylmalate dehydratase compare
PS417_19065 -2.5 -1.2 monooxygenase compare
PS417_23800 -2.4 -11.7 ketol-acid reductoisomerase compare
PS417_23810 -2.3 -8.8 acetolactate synthase 3 catalytic subunit compare
PS417_21630 -2.2 -1.5 magnesium transporter compare
PS417_02975 -2.2 -2.8 3-dehydroquinate dehydratase compare
PS417_27195 -2.2 -1.0 N-acetylglutamate synthase compare
PS417_05365 -2.2 -2.3 FAD-binding protein compare
PS417_23995 -2.2 -1.0 preprotein translocase subunit SecG compare
PS417_10040 -2.2 -1.4 MFS transporter compare
PS417_15035 -2.2 -1.7 alkylhydroperoxidase compare
PS417_27300 -2.1 -0.7 cell division protein ZapA compare
PS417_22795 -2.1 -1.5 exclusion suppressor FxsA compare
PS417_25710 -2.0 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_27135 -2.0 -0.6 glutamine synthetase compare
PS417_01145 -1.9 -1.1 taurine transporter ATP-binding subunit compare
PS417_25650 -1.9 -1.8 anhydro-N-acetylmuramic acid kinase compare
PS417_26890 -1.9 -4.8 dihydroxy-acid dehydratase compare
PS417_18600 -1.8 -2.2 isopropylmalate isomerase compare
PS417_24745 -1.8 -2.1 gamma-glutamyl phosphate reductase compare
PS417_08540 -1.8 -1.6 RNA helicase compare
PS417_23545 -1.8 -1.5 gamma-glutamyl kinase compare
PS417_24370 -1.8 -0.8 (2Fe-2S)-binding protein compare
PS417_02415 -1.8 -3.5 phosphoserine phosphatase compare
PS417_27040 -1.7 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_22445 -1.7 -2.0 ATP-dependent DNA helicase RuvB compare
PS417_23915 -1.7 -2.9 pantoate--beta-alanine ligase compare
PS417_08410 -1.6 -1.6 hypothetical protein compare
PS417_25720 -1.6 -3.9 anthranilate synthase component II compare
PS417_06375 -1.6 -0.5 deoxycytidine triphosphate deaminase compare
PS417_20880 -1.6 -2.3 GntR family transcriptional regulator compare
PS417_01620 -1.6 -2.1 preprotein translocase subunit SecB compare
PS417_01575 -1.6 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_07165 -1.6 -5.4 dihydrodipicolinate synthase compare
PS417_07170 -1.6 -2.9 hypothetical protein compare
PS417_24710 -1.6 -3.6 lipoprotein compare
PS417_04585 -1.6 -0.9 hypothetical protein compare
PS417_18530 -1.5 -3.9 O-succinylhomoserine sulfhydrylase compare
PS417_27585 -1.5 -1.7 diaminopimelate epimerase compare
PS417_02510 -1.5 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_03145 -1.5 -1.7 acetyl-CoA acetyltransferase compare
PS417_27870 -1.5 -1.7 ATP-dependent DNA helicase RecG compare
PS417_07620 -1.5 -0.6 beta-hexosaminidase compare
PS417_05595 -1.4 -8.4 ornithine carbamoyltransferase compare
PS417_06685 -1.4 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_03310 -1.4 -4.5 carbonate dehydratase compare
PS417_18585 -1.4 -3.8 3-isopropylmalate dehydrogenase compare
PS417_25725 -1.4 -7.9 anthranilate synthase component I compare
PS417_15540 -1.4 -1.2 NUDIX hydrolase compare
PS417_04170 -1.4 -3.2 stringent starvation protein A compare
PS417_26740 -1.4 -5.4 homoserine acetyltransferase compare
PS417_23900 -1.4 -5.5 poly(A) polymerase compare
PS417_05445 -1.4 -1.3 DNA mismatch repair protein MutT compare
PS417_18730 -1.4 -2.4 ABC transporter permease compare
PS417_17855 -1.4 -3.1 major facilitator transporter compare
PS417_22570 -1.3 -0.4 H-NS histone compare
PS417_16645 -1.3 -2.6 XRE family transcriptional regulator compare
PS417_18560 -1.3 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_22620 -1.3 -3.0 pyruvate kinase compare
PS417_11440 -1.3 -1.6 hypothetical protein compare
PS417_08170 -1.3 -4.3 capsular biosynthesis protein compare
PS417_19350 -1.3 -3.2 GTP cyclohydrolase compare
PS417_02000 -1.3 -7.1 glutamate synthase compare
PS417_16520 -1.2 -2.0 cold-shock protein compare
PS417_16990 -1.2 -5.3 acyl-CoA dehydrogenase compare
PS417_25155 -1.2 -1.7 hypothetical protein compare
PS417_23380 -1.2 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_08200 -1.2 -3.2 hypothetical protein compare
PS417_17610 -1.2 -0.9 AsnC family transcriptional regulator compare
PS417_04270 -1.2 -5.5 ribonuclease G compare
PS417_23390 -1.2 -5.3 ubiquinol oxidase subunit II compare
PS417_13055 -1.2 -1.9 aminotransferase compare
PS417_14065 -1.2 -4.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_13990 -1.2 -1.8 LysR family transcriptional regulator compare
PS417_01290 -1.2 -1.6 ADP-ribose diphosphatase compare
PS417_08225 -1.2 -4.0 acetolactate synthase compare
PS417_27155 -1.2 -1.3 aliphatic sulfonates transport ATP-binding subunit compare
PS417_10390 -1.2 -2.0 RNA polymerase subunit sigma24 compare
PS417_02770 -1.1 -1.9 membrane protein compare
PS417_27245 -1.1 -1.3 aminotransferase DegT compare
PS417_23025 -1.1 -3.1 murein transglycosylase compare
PS417_08125 -1.1 -0.3 prephenate dehydratase compare
PS417_02270 -1.1 -1.7 carbamoyltransferase compare
PS417_26335 -1.1 -1.2 BetI family transcriptional regulator compare
PS417_22060 -1.1 -0.9 hypothetical protein compare
PS417_25290 -1.1 -1.8 hypothetical protein compare
PS417_14045 -1.1 -3.1 alkyl hydroperoxide reductase compare
PS417_28070 -1.1 -3.6 phosphate ABC transporter ATP-binding protein compare
PS417_11535 -1.1 -2.0 nicotinate phosphoribosyltransferase compare
PS417_18755 -1.1 -1.4 CrtK compare
PS417_10480 -1.1 -1.8 glutathione S-transferase compare
PS417_08220 -1.1 -0.7 epimerase compare
PS417_01565 -1.1 -2.0 imidazole glycerol phosphate synthase compare
PS417_22895 -1.1 -5.4 tyrosine recombinase XerD compare
PS417_14835 -1.1 -2.5 amidase compare
PS417_14280 -1.1 -2.0 hypothetical protein compare
PS417_25645 -1.1 -2.9 peptidase M23 compare
PS417_16020 -1.1 -2.7 LysR family transcriptional regulator compare
PS417_08580 -1.0 -3.6 histidine kinase compare
PS417_23370 -1.0 -2.5 protoheme IX farnesyltransferase compare
PS417_22565 -1.0 -0.3 formyltetrahydrofolate deformylase compare
PS417_19675 -1.0 -2.6 chemotaxis protein CheY compare
PS417_09930 -1.0 -1.3 hypothetical protein compare
PS417_10025 -1.0 -0.8 bacteriophage lambda NinG family protein compare
PS417_13165 -1.0 -1.7 peroxidase compare
PS417_28080 -1.0 -6.5 phosphate ABC transporter permease compare
PS417_26390 -1.0 -1.1 acyltransferase compare
PS417_05820 -1.0 -1.8 recombinase RecX compare
PS417_26745 -1.0 -2.9 methionine biosynthesis protein MetW compare
PS417_25715 -1.0 -2.6 anthranilate phosphoribosyltransferase compare
PS417_21655 -1.0 -0.6 aspartate kinase compare
PS417_03260 -1.0 -0.5 5S ribosomal RNA compare
PS417_06680 -1.0 -1.8 nuclease PIN compare
PS417_23110 -1.0 -4.0 2-isopropylmalate synthase compare
PS417_00185 -1.0 -0.9 tryptophan synthase subunit beta compare
PS417_11925 -1.0 -1.4 hypothetical protein compare
PS417_23385 -1.0 -4.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_08230 -1.0 -1.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_01580 -1.0 -1.0 imidazole glycerol phosphate synthase compare
PS417_20650 -1.0 -5.2 hypothetical protein compare
PS417_15745 -1.0 -1.4 lipid carrier protein compare
PS417_11015 -1.0 -2.0 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_08205 -1.0 -3.5 acetyltransferase compare
PS417_01560 -1.0 -1.5 imidazoleglycerol-phosphate dehydratase compare
PS417_19955 -1.0 -0.8 hypothetical protein compare
PS417_27835 -1.0 -3.6 endoribonuclease compare
PS417_26805 -1.0 -0.6 cell division protein FtsE compare
PS417_04060 -1.0 -2.1 dipeptide ABC transporter, permease component (from data) compare
PS417_18395 -0.9 -1.7 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_06675 -0.9 -1.7 ATP-dependent helicase compare
PS417_21495 -0.9 -2.7 lipoprotein compare
PS417_07560 -0.9 -1.0 universal stress protein UspA compare
PS417_27865 -0.9 -1.1 LysR family transcriptional regulator compare
PS417_24115 -0.9 -1.4 hypothetical protein compare
PS417_04220 -0.9 -0.9 4-carboxymuconolactone decarboxylase compare
PS417_07085 -0.9 -2.1 transcriptional regulator compare
PS417_23500 -0.9 -3.0 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
PS417_08245 -0.9 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_24615 -0.9 -0.6 hypothetical protein compare
PS417_21180 -0.9 -2.5 short-chain dehydrogenase compare
PS417_19305 -0.9 -2.7 acireductone dioxygenase compare
PS417_06770 -0.9 -1.5 multidrug transporter compare
PS417_24835 -0.9 -2.4 hypothetical protein compare
PS417_07140 -0.9 -1.1 peptidase M48 compare
PS417_02575 -0.9 -2.4 membrane protein compare
PS417_03525 -0.9 -1.0 hypothetical protein compare
PS417_15325 -0.9 -0.8 type VI secretion protein compare
PS417_18710 -0.9 -3.2 hypothetical protein compare
PS417_00390 -0.9 -3.1 ABC transporter substrate-binding protein compare
PS417_15510 -0.9 -1.3 hypothetical protein compare
PS417_23105 -0.9 -1.1 hypothetical protein compare
PS417_18690 -0.9 -2.3 aromatic amino acid aminotransferase compare
PS417_26835 -0.9 -1.5 3-mercaptopyruvate sulfurtransferase compare
PS417_00535 -0.9 -1.7 Holliday junction resolvase compare
PS417_12695 -0.9 -3.4 mannitol dehydrogenase compare
PS417_20480 -0.9 -1.8 hypothetical protein compare
PS417_22815 -0.9 -1.7 permease compare
PS417_20140 -0.9 -1.7 nucleoprotein/polynucleotide-associated enzyme compare
PS417_08335 -0.9 -1.0 hypothetical protein compare
PS417_12505 -0.9 -2.4 peptidase compare
PS417_04410 -0.9 -1.3 hypothetical protein compare
PS417_26990 -0.8 -0.4 RNA pyrophosphohydrolase compare
PS417_10600 -0.8 -1.4 hypothetical protein compare
PS417_06645 -0.8 -4.3 RNA polymerase-associated protein RapA compare
PS417_20775 -0.8 -1.2 coproporphyrinogen III oxidase compare
PS417_16555 -0.8 -0.9 cupin compare
PS417_26985 -0.8 -1.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01030 -0.8 -1.0 glutamine ABC transporter substrate-binding protein compare
PS417_08190 -0.8 -5.9 membrane protein compare
PS417_27005 -0.8 -0.7 membrane protein compare
PS417_04415 -0.8 -3.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_21680 -0.8 -2.0 succinylglutamate desuccinylase compare
PS417_24575 -0.8 -0.9 hypothetical protein compare
PS417_00370 -0.8 -0.7 hypothetical protein compare
PS417_26370 -0.8 -2.1 RNA helicase compare
PS417_21575 -0.8 -2.7 chemotaxis protein compare
PS417_08195 -0.8 -3.8 hypothetical protein compare
PS417_05550 -0.8 -2.9 amino acid ABC transporter permease compare
PS417_12490 -0.8 -1.2 autotransporter adhesin compare
PS417_17140 -0.8 -2.9 LysR family transcriptional regulator compare
PS417_19505 -0.8 -1.3 2,4-diaminobutyrate 4-aminotransferase compare
PS417_05815 -0.8 -2.0 recombinase RecA compare
PS417_24100 -0.8 -3.8 transcriptional regulator PdhR compare
PS417_04800 -0.8 -1.2 alginate O-acetyltransferase compare
PS417_00995 -0.8 -1.2 alpha/beta hydrolase compare
PS417_14950 -0.8 -2.1 structural protein MipA compare
PS417_00915 -0.8 -2.2 aminotransferase compare
PS417_10045 -0.8 -1.8 hypothetical protein compare
PS417_15975 -0.8 -1.1 glutamate carboxypeptidase compare
PS417_17890 -0.8 -1.9 3-oxoacyl-ACP reductase compare
PS417_09925 -0.8 -2.1 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms