Experiment set34S657 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
PS417_06100 +3.0 7.7 SAM-dependent methyltransferase compare
PS417_16370 +2.7 12.0 chemotaxis protein CheY compare
PS417_01915 +2.6 0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_24650 +2.5 1.9 membrane protein compare
PS417_18470 +2.5 1.1 hypothetical protein compare
PS417_09695 +2.5 2.3 hydrolase compare
PS417_11900 +2.2 4.6 conjugal transfer protein TraR compare
PS417_08365 +2.2 2.7 hypothetical protein compare
PS417_07820 +2.2 2.8 transposase compare
PS417_14595 +2.1 1.5 pyrroline-5-carboxylate reductase compare
PS417_06835 +2.0 1.9 phospholipase compare
PS417_27605 +2.0 7.1 hypothetical protein compare
PS417_01630 +2.0 4.5 hypothetical protein compare
PS417_08360 +1.9 5.8 DoxX family protein compare
PS417_06365 +1.8 7.6 RNA polymerase sigma factor compare
PS417_28265 +1.6 2.3 pyridoxamine kinase compare
PS417_21625 +1.6 2.2 DNA-binding protein compare
PS417_20105 +1.6 8.9 glycosyl transferase compare
PS417_06465 +1.6 1.5 transcriptional regulator compare
PS417_08465 +1.5 1.2 elongation factor GreAB compare
PS417_07455 +1.5 1.4 glutamine amidotransferase compare
PS417_05990 +1.5 3.4 diguanylate cyclase compare
PS417_21000 +1.5 1.6 CrfX protein compare
PS417_09085 +1.5 1.3 hypothetical protein compare
PS417_17215 +1.5 2.0 peptidylprolyl isomerase compare
PS417_25030 +1.5 1.7 hypothetical protein compare
PS417_18360 +1.5 2.4 hypothetical protein compare
PS417_15910 +1.4 1.3 lysine transporter LysE compare
PS417_19600 +1.4 1.8 exonuclease compare
PS417_10720 +1.3 5.1 chemotaxis protein CheY compare
PS417_19825 +1.3 10.6 ATPase AAA compare
PS417_23490 +1.3 1.2 dihydrofolate reductase compare
PS417_27075 +1.3 1.6 thiol-disulfide isomerase compare
PS417_00795 +1.2 1.3 lipoprotein compare
PS417_03455 +1.2 1.5 type III secretion protein compare
PS417_05960 +1.2 2.0 chemotaxis protein compare
PS417_15065 +1.2 3.0 GntR family transcriptional regulator compare
PS417_26465 +1.2 3.4 hypothetical protein compare
PS417_01605 +1.2 1.1 phosphoglycerate mutase compare
PS417_05050 +1.2 1.0 carboxymethylenebutenolidase compare
PS417_27315 +1.2 1.2 hypothetical protein compare
PS417_00385 +1.2 0.8 Fur family transcriptional regulator compare
PS417_27810 +1.2 2.4 ribonuclease PH compare
PS417_26145 +1.1 3.0 hypothetical protein compare
PS417_20715 +1.1 1.0 cytochrome Cbb3 compare
PS417_22870 +1.1 2.4 lipoprotein compare
PS417_26645 +1.1 2.4 chemotaxis protein compare
PS417_13075 +1.1 1.9 hypothetical protein compare
PS417_06500 +1.1 1.2 hypothetical protein compare
PS417_01750 +1.1 2.1 histidine ammonia-lyase compare
PS417_24155 +1.1 1.2 ATP-binding protein compare
PS417_00575 +1.1 1.3 LysR family transcriptional regulator compare
PS417_27800 +1.1 1.1 exodeoxyribonuclease III compare
PS417_10170 +1.1 1.8 hypothetical protein compare
PS417_13855 +1.1 1.3 acetyl-CoA acetyltransferase compare
PS417_05120 +1.1 1.5 RNA polymerase subunit sigma-24 compare
PS417_20985 +1.0 0.6 porin compare
PS417_01405 +1.0 1.9 sugar transporter compare
PS417_09160 +1.0 3.0 GNAT family acetyltransferase compare
PS417_27610 +1.0 3.3 hypothetical protein compare
PS417_14960 +1.0 1.8 ATPase compare
PS417_03385 +1.0 0.8 flavin reductase compare
PS417_26190 +1.0 1.6 sarcosine oxidase subunit beta compare
PS417_21670 +1.0 2.1 6,7-dimethyl-8-ribityllumazine synthase compare
PS417_12460 +1.0 3.5 hypothetical protein compare
PS417_25380 +1.0 2.9 hypothetical protein compare
PS417_02805 +1.0 1.5 urease subunit gamma compare
PS417_01970 +1.0 1.4 pilus assembly protein compare
PS417_23950 +1.0 1.0 polynucleotide phosphorylase/polyadenylase compare
PS417_24265 +1.0 3.6 ABC transporter ATP-binding protein compare
PS417_15895 +1.0 2.8 iron dicitrate transport regulator FecR compare
PS417_14760 +1.0 3.0 membrane protein compare
PS417_12940 +0.9 2.7 sugar ABC transporter substrate-binding protein compare
PS417_06145 +0.9 1.0 hypothetical protein compare
PS417_03070 +0.9 2.4 LuxR family transcriptional regulator compare
PS417_09545 +0.9 1.5 aldehyde-activating protein compare
PS417_27935 +0.9 1.3 type VI secretion protein compare
PS417_03790 +0.9 2.1 pilus assembly protein PilW compare
PS417_19935 +0.9 2.3 hypothetical protein compare
PS417_00155 +0.9 3.5 2-dehydro-3-deoxygalactonokinase compare
PS417_10265 +0.9 2.9 peptidase compare
PS417_20095 +0.9 2.9 hypothetical protein compare
PS417_19560 +0.9 4.4 amino acid ABC transporter substrate-binding protein compare
PS417_18310 +0.9 0.4 hypothetical protein compare
PS417_22385 +0.9 2.9 quinolinate synthase A compare
PS417_16975 +0.9 1.3 GNAT family acetyltransferase compare
PS417_21880 +0.9 2.5 fatty acid hydroxylase compare
PS417_12155 +0.9 1.5 transporter compare
PS417_23755 +0.9 1.1 membrane protein compare
PS417_13505 +0.9 1.5 alpha/beta hydrolase compare
PS417_08740 +0.8 2.2 ribose-phosphate pyrophosphokinase compare
PS417_18350 +0.8 2.4 hypothetical protein compare
PS417_12630 +0.8 1.7 monooxygenase compare
PS417_11360 +0.8 2.5 energy transducer TonB compare
PS417_05825 +0.8 2.2 cytochrome D ubiquinol oxidase subunit II compare
PS417_26330 +0.8 1.3 beta-aspartyl peptidase compare
PS417_08525 +0.8 1.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_07870 +0.8 1.7 hypothetical protein compare
PS417_07495 +0.8 1.6 ATPase AAA compare
PS417_04375 +0.8 0.7 ABC transporter ATP-binding protein compare
PS417_10105 +0.8 2.3 hypothetical protein compare
PS417_17810 +0.8 2.0 microcin B17-processing protein McbB compare
PS417_18850 +0.8 1.3 hypothetical protein compare
PS417_28145 +0.8 1.7 AraC family transcriptional regulator compare
PS417_00775 +0.8 2.2 hypothetical protein compare
PS417_00180 +0.8 1.1 tryptophan synthase subunit alpha compare
PS417_27900 +0.8 1.9 ABC transporter ATP-binding protein compare
PS417_07950 +0.8 1.8 MFS transporter compare
PS417_05040 +0.8 1.5 amino acid dehydrogenase compare
PS417_12990 +0.8 1.3 nucleoside hydrolase compare
PS417_11950 +0.8 1.4 hypothetical protein compare
PS417_04305 +0.8 1.1 aspartate ammonia-lyase compare
PS417_27055 +0.8 2.1 hypothetical protein compare
PS417_17200 +0.8 1.7 hypothetical protein compare
PS417_14420 +0.8 1.3 acyl-CoA dehydrogenase compare
PS417_21900 +0.8 2.1 allophanate hydrolase compare
PS417_05535 +0.8 1.1 Fis family transcriptional regulator compare
PS417_06810 +0.8 1.1 hemolysin compare
PS417_04425 +0.8 1.4 histidinol-phosphate aminotransferase compare
PS417_18055 +0.8 0.8 general secretion pathway protein GspK compare
PS417_15180 +0.8 2.6 acyl dehydratase compare
PS417_22410 +0.8 2.6 hypothetical protein compare
PS417_08840 +0.8 1.1 serine/threonine protein kinase compare
PS417_04760 +0.8 1.6 hypothetical protein compare
PS417_17415 +0.8 3.7 histidine kinase compare
PS417_17000 +0.8 1.8 MerR family transcriptional regulator compare
PS417_23135 +0.8 1.2 GTP-binding protein compare
PS417_07585 +0.8 1.2 hypothetical protein compare
PS417_15050 +0.8 2.0 3-methyladenine DNA glycosylase compare
PS417_01735 +0.7 1.4 ABC transporter permease compare
PS417_21155 +0.7 1.9 hypothetical protein compare
PS417_23625 +0.7 1.9 LysR family transcriptional regulator compare
PS417_23770 +0.7 0.6 exodeoxyribonuclease V subunit alpha compare
PS417_00755 +0.7 0.7 biofilm PGA synthesis protein PgaD compare
PS417_01960 +0.7 1.8 pilus assembly protein compare
PS417_13710 +0.7 2.0 hypothetical protein compare
PS417_23520 +0.7 1.1 cysteine biosynthesis protein CysZ compare
PS417_28270 +0.7 2.6 hypothetical protein compare
PS417_19870 +0.7 3.0 flagellar rod assembly protein FlgJ compare
PS417_04195 +0.7 0.9 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
PS417_28180 +0.7 1.8 GNAT family acetyltransferase compare
PS417_28030 +0.7 2.0 hypothetical protein compare
PS417_25315 +0.7 1.5 membrane protein compare
PS417_10870 +0.7 1.7 GABA permease compare
PS417_21425 +0.7 1.0 4-amino-4-deoxychorismate lyase compare
PS417_22190 +0.7 1.5 diguanylate cyclase compare
PS417_04705 +0.7 1.2 hypothetical protein compare
PS417_15215 +0.7 1.0 protein activator of alkane oxidation PraA compare
PS417_27170 +0.7 3.1 ABC transporter substrate-binding protein compare
PS417_10715 +0.7 1.1 Cro/Cl family transcriptional regulator compare
PS417_27520 +0.7 1.3 uroporphyrin-III methyltransferase compare
PS417_00925 +0.7 1.3 hypothetical protein compare
PS417_21220 +0.7 1.8 acetyl-CoA acetyltransferase compare
PS417_18235 +0.7 1.3 nitrile hydratase compare
PS417_23775 +0.7 1.4 exodeoxyribonuclease V subunit beta compare
PS417_19785 +0.7 3.4 flagellar biogenesis protein compare
PS417_05160 +0.7 0.8 DNA polymerase III subunit chi compare
PS417_12580 +0.7 1.4 membrane protein compare
PS417_00615 +0.7 2.4 hypothetical protein compare
PS417_15285 +0.7 0.8 type VI secretion protein compare
PS417_11825 +0.7 0.8 transcriptional regulator compare
PS417_17065 +0.7 0.9 catalase compare
PS417_24535 +0.7 1.6 membrane protein compare
PS417_11115 +0.7 1.6 peroxidase compare
PS417_09580 +0.7 1.8 tyrosyl-trna synthetase compare
PS417_19735 +0.7 3.1 flagellar biosynthesis protein FliQ compare
PS417_19620 +0.7 1.3 hypothetical protein compare
PS417_19730 +0.7 2.2 flagellar biosynthesis protein FliR compare
PS417_07710 +0.7 0.7 membrane protein compare
PS417_00960 +0.7 0.9 transcriptional regulator compare
PS417_07315 +0.7 2.3 LysR family transcriptional regulator compare
PS417_27940 +0.7 1.2 type VI secretion protein compare
PS417_01360 +0.7 2.0 4-oxalocrotonate tautomerase compare
PS417_14040 +0.7 2.3 alkyl hydroperoxide reductase compare
PS417_19235 +0.7 1.7 GNAT family acetyltransferase compare
PS417_02360 +0.7 2.0 nitrate reductase compare
PS417_04180 +0.6 1.3 GntR family transcriptional regulator compare
PS417_11300 +0.6 2.0 general secretion pathway protein GspE compare
PS417_15505 +0.6 0.9 glutaminase compare
PS417_09625 +0.6 1.0 sugar ABC transporter substrate-binding protein compare
PS417_26555 +0.6 1.6 endoribonuclease L-PSP compare
PS417_05970 +0.6 2.3 chemotaxis protein CheR compare
PS417_13425 +0.6 1.4 cupin compare
PS417_26755 +0.6 0.5 nucleoside-triphosphate diphosphatase compare
PS417_02595 +0.6 1.7 NAD synthetase compare
PS417_17485 +0.6 2.2 membrane protein compare
PS417_26250 +0.6 2.7 peptidase M19 compare
PS417_05435 +0.6 1.3 diguanylate cyclase compare
PS417_24705 +0.6 1.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_11870 +0.6 2.1 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_14395 +0.6 1.6 fe2+ zn2+ uptake regulation protein compare
PS417_15475 +0.6 2.0 IclR family transcriptional regulator compare
PS417_11075 +0.6 1.3 hydroxypyruvate isomerase compare
PS417_01920 +0.6 0.5 ATP-dependent protease subunit HslV compare
PS417_02870 +0.6 1.9 TonB-dependent receptor compare
PS417_12755 +0.6 1.2 RND transporter compare
PS417_12620 +0.6 2.2 SAM-dependent methyltransferase compare
PS417_26900 +0.6 0.9 L-cystine transporter tcyP compare
PS417_17445 +0.6 1.9 sulfur oxidation protein SoxZ compare
PS417_17010 +0.6 1.8 AMP-binding protein compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms