Experiment set34S656 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_18600 -3.6 -3.1 isopropylmalate isomerase compare
PS417_00045 -3.0 -0.8 glycerol acyltransferase compare
PS417_16005 -3.0 -2.7 ATPase compare
PS417_23805 -2.9 -4.7 acetolactate synthase 3 regulatory subunit compare
PS417_23810 -2.8 -9.2 acetolactate synthase 3 catalytic subunit compare
PS417_21480 -2.8 -1.2 23S rRNA pseudouridylate synthase compare
PS417_18595 -2.6 -3.6 3-isopropylmalate dehydratase compare
PS417_18585 -2.6 -5.0 3-isopropylmalate dehydrogenase compare
PS417_23800 -2.5 -11.5 ketol-acid reductoisomerase compare
PS417_02560 -2.5 -1.7 23S rRNA methyltransferase compare
PS417_08230 -2.5 -2.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08540 -2.4 -1.4 RNA helicase compare
PS417_26890 -2.4 -7.2 dihydroxy-acid dehydratase compare
PS417_02975 -2.3 -2.9 3-dehydroquinate dehydratase compare
PS417_24935 -2.2 -0.8 hypothetical protein compare
PS417_20635 -2.2 -1.1 ABC transporter ATP-binding protein compare
PS417_23775 -2.2 -1.5 exodeoxyribonuclease V subunit beta compare
PS417_24745 -2.1 -1.7 gamma-glutamyl phosphate reductase compare
PS417_03310 -2.1 -7.0 carbonate dehydratase compare
PS417_27040 -2.1 -2.8 3-phosphoglycerate dehydrogenase compare
PS417_25710 -2.0 -0.7 indole-3-glycerol-phosphate synthase compare
PS417_08200 -2.0 -3.8 hypothetical protein compare
PS417_25650 -1.9 -1.6 anhydro-N-acetylmuramic acid kinase compare
PS417_04170 -1.9 -5.5 stringent starvation protein A compare
PS417_16555 -1.9 -1.0 cupin compare
PS417_28225 -1.9 -1.3 hypothetical protein compare
PS417_16490 -1.8 -0.6 cell division protein FtsK compare
PS417_21210 -1.8 -2.4 amidotransferase compare
PS417_23545 -1.8 -1.3 gamma-glutamyl kinase compare
PS417_06675 -1.7 -2.2 ATP-dependent helicase compare
PS417_08225 -1.7 -3.2 acetolactate synthase compare
PS417_12855 -1.7 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13075 -1.7 -1.0 hypothetical protein compare
PS417_06375 -1.7 -0.4 deoxycytidine triphosphate deaminase compare
PS417_08205 -1.7 -3.7 acetyltransferase compare
PS417_19425 -1.6 -0.7 allantoicase compare
PS417_14590 -1.6 -1.3 LysR family transcriptional regulator compare
PS417_24835 -1.6 -4.1 hypothetical protein compare
PS417_08335 -1.6 -1.6 hypothetical protein compare
PS417_16990 -1.6 -5.9 acyl-CoA dehydrogenase compare
PS417_27585 -1.6 -1.4 diaminopimelate epimerase compare
PS417_28070 -1.6 -5.1 phosphate ABC transporter ATP-binding protein compare
PS417_00175 -1.5 -0.9 CigR compare
PS417_23915 -1.5 -3.0 pantoate--beta-alanine ligase compare
PS417_04585 -1.5 -0.7 hypothetical protein compare
PS417_04365 -1.5 -0.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21000 -1.5 -1.2 CrfX protein compare
PS417_24125 -1.4 -2.9 hypothetical protein compare
PS417_18530 -1.4 -3.2 O-succinylhomoserine sulfhydrylase compare
PS417_14065 -1.4 -6.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_10025 -1.4 -1.1 bacteriophage lambda NinG family protein compare
PS417_21630 -1.4 -1.7 magnesium transporter compare
PS417_27195 -1.4 -0.6 N-acetylglutamate synthase compare
PS417_01290 -1.4 -1.2 ADP-ribose diphosphatase compare
PS417_07640 -1.3 -2.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01620 -1.3 -1.5 preprotein translocase subunit SecB compare
PS417_26260 -1.3 -1.1 hypothetical protein compare
PS417_26175 -1.3 -0.7 sarcosine oxidase subunit gamma compare
PS417_09085 -1.3 -0.9 hypothetical protein compare
PS417_07420 -1.3 -2.7 restriction endonuclease compare
PS417_26985 -1.3 -2.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20140 -1.3 -1.8 nucleoprotein/polynucleotide-associated enzyme compare
PS417_13455 -1.3 -1.5 alkaline proteinase inhibitor compare
PS417_20880 -1.3 -1.6 GntR family transcriptional regulator compare
PS417_09235 -1.3 -0.8 molecular chaperone compare
PS417_17705 -1.3 -2.4 LacI family transcriptional regulator compare
PS417_19835 -1.3 -0.8 flagellar biosynthesis protein FliS compare
PS417_06245 -1.3 -1.0 zinc metallopeptidase RseP compare
PS417_08685 -1.3 -0.8 flagellar hook-length control protein FliK compare
PS417_20610 -1.3 -1.0 hypothetical protein compare
PS417_23900 -1.3 -6.0 poly(A) polymerase compare
PS417_13185 -1.3 -1.8 RND transporter compare
PS417_07165 -1.2 -3.2 dihydrodipicolinate synthase compare
PS417_16715 -1.2 -1.2 DoxX family protein compare
PS417_11810 -1.2 -2.1 oxidoreductase compare
PS417_21255 -1.2 -1.5 hypothetical protein compare
PS417_23385 -1.2 -5.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_04865 -1.2 -2.5 molybdenum cofactor biosynthesis protein MoaC compare
PS417_20650 -1.2 -6.3 hypothetical protein compare
PS417_02415 -1.2 -2.4 phosphoserine phosphatase compare
PS417_14555 -1.2 -2.4 AsnC family transcriptional regulator compare
PS417_24710 -1.2 -2.9 lipoprotein compare
PS417_08185 -1.2 -3.6 glycosyl transferase compare
PS417_13800 -1.2 -2.0 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_12915 -1.2 -2.8 DNA-binding protein compare
PS417_01850 -1.2 -1.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_05445 -1.2 -1.0 DNA mismatch repair protein MutT compare
PS417_19095 -1.2 -1.1 hypothetical protein compare
PS417_08190 -1.2 -7.7 membrane protein compare
PS417_22350 -1.2 -1.3 Fis family transcriptional regulator compare
PS417_25720 -1.2 -3.5 anthranilate synthase component II compare
PS417_20755 -1.2 -2.5 membrane protein compare
PS417_15285 -1.2 -0.7 type VI secretion protein compare
PS417_08170 -1.1 -4.1 capsular biosynthesis protein compare
PS417_09245 -1.1 -0.9 recombinase RdgC compare
PS417_18560 -1.1 -5.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26745 -1.1 -2.8 methionine biosynthesis protein MetW compare
PS417_08195 -1.1 -4.5 hypothetical protein compare
PS417_23380 -1.1 -1.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_26370 -1.1 -2.3 RNA helicase compare
PS417_15885 -1.1 -1.3 GCN5 family acetyltransferase compare
PS417_23725 -1.1 -2.2 methylmalonate-semialdehyde dehydrogenase compare
PS417_14835 -1.1 -3.4 amidase compare
PS417_16195 -1.1 -0.7 AraC family transcriptional regulator compare
PS417_04050 -1.1 -1.4 peptide ABC transporter ATP-binding protein compare
PS417_00705 -1.1 -1.0 MarR family transcriptional regulator compare
PS417_22990 -1.1 -1.0 iron dicitrate transport regulator FecR compare
PS417_02895 -1.1 -0.8 precorrin-6Y C5,15-methyltransferase compare
PS417_23110 -1.1 -4.5 2-isopropylmalate synthase compare
PS417_07120 -1.1 -3.1 RNA polymerase sigma-H factor compare
PS417_12520 -1.1 -1.8 hypothetical protein compare
PS417_13620 -1.1 -0.8 thermostable hemolysin compare
PS417_26740 -1.1 -2.4 homoserine acetyltransferase compare
PS417_23370 -1.1 -3.0 protoheme IX farnesyltransferase compare
PS417_22565 -1.1 -0.3 formyltetrahydrofolate deformylase compare
PS417_08125 -1.1 -0.3 prephenate dehydratase compare
PS417_25645 -1.1 -3.0 peptidase M23 compare
PS417_23580 -1.1 -0.8 peptidylprolyl isomerase compare
PS417_02005 -1.0 -5.7 glutamate synthase compare
PS417_04415 -1.0 -3.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_12195 -1.0 -2.8 ABC transporter permease compare
PS417_05010 -1.0 -1.4 IclR family transcriptional regulator compare
PS417_12160 -1.0 -2.5 Fis family transcriptional regulator compare
PS417_01145 -1.0 -0.6 taurine transporter ATP-binding subunit compare
PS417_15465 -1.0 -2.5 carboxynorspermidine decarboxylase compare
PS417_01710 -1.0 -2.6 histidine utilization repressor compare
PS417_01510 -1.0 -1.1 hypothetical protein compare
PS417_02510 -1.0 -3.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25725 -1.0 -6.8 anthranilate synthase component I compare
PS417_25120 -1.0 -2.2 capsular biosynthesis protein compare
PS417_19955 -1.0 -1.0 hypothetical protein compare
PS417_10275 -1.0 -1.8 histidine kinase compare
PS417_01095 -1.0 -0.8 amino acid ABC transporter ATP-binding protein compare
PS417_12870 -1.0 -1.1 enoyl-CoA hydratase compare
PS417_27315 -1.0 -0.6 hypothetical protein compare
PS417_05815 -1.0 -2.5 recombinase RecA compare
PS417_05595 -1.0 -4.9 ornithine carbamoyltransferase compare
PS417_01580 -1.0 -0.5 imidazole glycerol phosphate synthase compare
PS417_23715 -1.0 -1.5 cupin compare
PS417_20660 -1.0 -5.2 hypothetical protein compare
PS417_07305 -1.0 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_00375 -1.0 -1.3 membrane protein compare
PS417_27245 -1.0 -0.9 aminotransferase DegT compare
PS417_14125 -1.0 -2.2 molybdenum ABC transporter ATP-binding protein compare
PS417_05570 -1.0 -2.7 DeoR faimly transcriptional regulator compare
PS417_08680 -1.0 -1.3 flagellar biosynthesis protein FlhB compare
PS417_07240 -0.9 -2.1 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_19655 -0.9 -2.2 chemotaxis protein CheW compare
PS417_08090 -0.9 -0.3 3-oxoacyl-ACP reductase compare
PS417_24555 -0.9 -2.5 polyribonucleotide nucleotidyltransferase compare
PS417_17890 -0.9 -3.2 3-oxoacyl-ACP reductase compare
PS417_15940 -0.9 -2.8 mechanosensitive ion channel protein MscS compare
PS417_27675 -0.9 -1.9 xanthine phosphoribosyltransferase compare
PS417_12490 -0.9 -1.0 autotransporter adhesin compare
PS417_12735 -0.9 -1.1 peroxidase compare
PS417_07170 -0.9 -2.0 hypothetical protein compare
PS417_27005 -0.9 -0.6 membrane protein compare
PS417_09470 -0.9 -0.8 hypothetical protein compare
PS417_04875 -0.9 -0.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_10860 -0.9 -1.9 flagellar basal body rod protein FlgG compare
PS417_28080 -0.9 -5.9 phosphate ABC transporter permease compare
PS417_15480 -0.9 -1.2 ABC transporter substrate-binding protein compare
PS417_20160 -0.9 -2.1 cysteine synthase compare
PS417_15135 -0.9 -0.8 hypothetical protein compare
PS417_07620 -0.9 -0.4 beta-hexosaminidase compare
PS417_25280 -0.9 -2.3 methyltransferase compare
PS417_00155 -0.9 -2.5 2-dehydro-3-deoxygalactonokinase compare
PS417_18390 -0.9 -3.5 LacI family transcriptional regulator compare
PS417_06880 -0.9 -2.6 RNA polymerase sigma factor compare
PS417_23360 -0.9 -0.6 hypothetical protein compare
PS417_15370 -0.9 -1.7 kinase compare
PS417_27435 -0.9 -3.5 polyphosphate kinase compare
PS417_10490 -0.9 -1.7 delta-aminolevulinic acid dehydratase compare
PS417_19660 -0.9 -2.9 cobalamin biosynthesis protein CobQ compare
PS417_04725 -0.9 -2.8 chemotaxis protein CheW compare
PS417_01310 -0.9 -1.5 ATPase compare
PS417_15295 -0.9 -2.7 Fis family transcriptional regulator compare
PS417_05860 -0.9 -1.3 hypothetical protein compare
PS417_08245 -0.9 -0.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_19685 -0.8 -3.2 protein phosphatase compare
PS417_16645 -0.8 -1.8 XRE family transcriptional regulator compare
PS417_20130 -0.8 -3.2 dehydrogenase compare
PS417_07875 -0.8 -0.5 hypothetical protein compare
PS417_07595 -0.8 -2.0 PasA protein compare
PS417_00185 -0.8 -0.9 tryptophan synthase subunit beta compare
PS417_21055 -0.8 -1.7 threonyl-tRNA synthetase compare
PS417_25705 -0.8 -1.3 lipoate--protein ligase compare
PS417_18930 -0.8 -0.8 restriction endonuclease subunit S compare
PS417_17735 -0.8 -1.8 LacI family transcriptional regulator compare
PS417_14255 -0.8 -1.4 phosphate import ATP-binding protein PstB compare
PS417_19535 -0.8 -2.3 dihydroneopterin aldolase compare
PS417_22815 -0.8 -1.3 permease compare
PS417_26900 -0.8 -0.9 L-cystine transporter tcyP compare
PS417_18300 -0.8 -2.0 transcriptional regulator compare
PS417_17440 -0.8 -1.1 beta-lactamase compare
PS417_14850 -0.8 -1.4 hypothetical protein compare
PS417_01565 -0.8 -2.1 imidazole glycerol phosphate synthase compare
PS417_16825 -0.8 -1.7 membrane protein compare
PS417_03965 -0.8 -2.8 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_24775 -0.8 -1.5 dehydratase compare


Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms