Experiment set34S616 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_23805 -5.8 -4.0 acetolactate synthase 3 regulatory subunit compare
PS417_27040 -5.6 -2.7 3-phosphoglycerate dehydrogenase compare
PS417_16990 -5.5 -6.6 acyl-CoA dehydrogenase compare
PS417_01575 -5.3 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18600 -5.0 -3.0 isopropylmalate isomerase compare
PS417_27435 -4.9 -6.7 polyphosphate kinase compare
PS417_23800 -4.6 -8.3 ketol-acid reductoisomerase compare
PS417_26740 -4.6 -9.2 homoserine acetyltransferase compare
PS417_18595 -4.4 -3.9 3-isopropylmalate dehydratase compare
PS417_25725 -4.4 -13.9 anthranilate synthase component I compare
PS417_03310 -4.2 -4.9 carbonate dehydratase compare
PS417_26890 -4.1 -6.3 dihydroxy-acid dehydratase compare
PS417_01855 -4.1 -1.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_25720 -4.0 -7.7 anthranilate synthase component II compare
PS417_28220 -4.0 -2.7 LysR family transcriptional regulator compare
PS417_23810 -3.8 -8.0 acetolactate synthase 3 catalytic subunit compare
PS417_02510 -3.7 -2.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27585 -3.7 -1.8 diaminopimelate epimerase compare
PS417_14065 -3.7 -12.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_18560 -3.6 -5.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18585 -3.5 -5.9 3-isopropylmalate dehydrogenase compare
PS417_04170 -3.5 -6.9 stringent starvation protein A compare
PS417_26805 -3.4 -1.0 cell division protein FtsE compare
PS417_23915 -3.4 -4.3 pantoate--beta-alanine ligase compare
PS417_05595 -3.3 -11.4 ornithine carbamoyltransferase compare
PS417_18530 -3.2 -3.3 O-succinylhomoserine sulfhydrylase compare
PS417_12855 -3.1 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13510 -3.0 -1.2 polyketide cyclase compare
PS417_16005 -2.8 -2.9 ATPase compare
PS417_24710 -2.8 -5.6 lipoprotein compare
PS417_02415 -2.8 -4.2 phosphoserine phosphatase compare
PS417_22990 -2.8 -1.9 iron dicitrate transport regulator FecR compare
PS417_02005 -2.7 -8.2 glutamate synthase compare
PS417_12355 -2.7 -2.1 magnesium chelatase compare
PS417_19415 -2.7 -3.0 allantoinase compare
PS417_26745 -2.7 -5.3 methionine biosynthesis protein MetW compare
PS417_24745 -2.6 -1.6 gamma-glutamyl phosphate reductase compare
PS417_04420 -2.6 -8.2 histidinol dehydrogenase compare
PS417_28050 -2.6 -2.4 hypothetical protein compare
PS417_02000 -2.6 -12.2 glutamate synthase compare
PS417_19675 -2.6 -4.8 chemotaxis protein CheY compare
PS417_12840 -2.5 -3.4 TetR family transcriptional regulator compare
PS417_01565 -2.5 -3.5 imidazole glycerol phosphate synthase compare
PS417_21210 -2.5 -2.4 amidotransferase compare
PS417_15975 -2.4 -2.3 glutamate carboxypeptidase compare
PS417_01095 -2.3 -1.4 amino acid ABC transporter ATP-binding protein compare
PS417_08200 -2.3 -4.1 hypothetical protein compare
PS417_23775 -2.3 -1.7 exodeoxyribonuclease V subunit beta compare
PS417_19955 -2.3 -1.6 hypothetical protein compare
PS417_23910 -2.3 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_27195 -2.3 -0.9 N-acetylglutamate synthase compare
PS417_25645 -2.3 -4.2 peptidase M23 compare
PS417_27305 -2.3 -8.0 5-formyltetrahydrofolate cyclo-ligase compare
PS417_27110 -2.2 -4.6 spermidine/putrescine ABC transporter permease compare
PS417_25710 -2.2 -0.9 indole-3-glycerol-phosphate synthase compare
PS417_20635 -2.2 -1.2 ABC transporter ATP-binding protein compare
PS417_21630 -2.1 -2.0 magnesium transporter compare
PS417_25650 -2.1 -1.9 anhydro-N-acetylmuramic acid kinase compare
PS417_03830 -2.1 -8.3 protein disaggregation chaperone compare
PS417_20130 -2.1 -6.4 dehydrogenase compare
PS417_00755 -2.0 -0.8 biofilm PGA synthesis protein PgaD compare
PS417_19350 -2.0 -3.6 GTP cyclohydrolase compare
PS417_06200 -2.0 -6.0 protein-PII uridylyltransferase compare
PS417_20610 -2.0 -1.4 hypothetical protein compare
PS417_08205 -2.0 -4.7 acetyltransferase compare
PS417_08230 -2.0 -2.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23110 -2.0 -4.6 2-isopropylmalate synthase compare
PS417_22520 -2.0 -1.1 histidine kinase compare
PS417_23545 -2.0 -1.5 gamma-glutamyl kinase compare
PS417_02270 -2.0 -3.4 carbamoyltransferase compare
PS417_01560 -2.0 -1.9 imidazoleglycerol-phosphate dehydratase compare
PS417_08685 -1.9 -1.5 flagellar hook-length control protein FliK compare
PS417_07170 -1.9 -2.6 hypothetical protein compare
PS417_15540 -1.9 -1.3 NUDIX hydrolase compare
PS417_04270 -1.9 -5.4 ribonuclease G compare
PS417_16510 -1.8 -3.1 Clp protease ClpX compare
PS417_01850 -1.8 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_04080 -1.8 -2.7 peptide ABC transporter substrate-binding protein compare
PS417_27425 -1.8 -6.8 exopolyphosphatase compare
PS417_04585 -1.8 -0.8 hypothetical protein compare
PS417_19705 -1.8 -2.3 flagellar biosynthesis regulator FlhF compare
PS417_06375 -1.8 -0.5 deoxycytidine triphosphate deaminase compare
PS417_05815 -1.8 -3.2 recombinase RecA compare
PS417_02975 -1.7 -2.7 3-dehydroquinate dehydratase compare
PS417_12195 -1.7 -4.0 ABC transporter permease compare
PS417_10025 -1.7 -1.4 bacteriophage lambda NinG family protein compare
PS417_00580 -1.6 -3.2 acyl-CoA dehydrogenase compare
PS417_03045 -1.6 -1.5 hypothetical protein compare
PS417_07620 -1.6 -0.6 beta-hexosaminidase compare
PS417_15090 -1.6 -1.8 hypothetical protein compare
PS417_24500 -1.6 -2.2 DEAD/DEAH box helicase compare
PS417_27835 -1.6 -4.0 endoribonuclease compare
PS417_24115 -1.6 -1.6 hypothetical protein compare
PS417_02560 -1.6 -1.5 23S rRNA methyltransferase compare
PS417_28070 -1.6 -4.1 phosphate ABC transporter ATP-binding protein compare
PS417_16555 -1.6 -1.2 cupin compare
PS417_09235 -1.6 -0.9 molecular chaperone compare
PS417_24705 -1.6 -1.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_05365 -1.5 -1.6 FAD-binding protein compare
PS417_27005 -1.5 -0.9 membrane protein compare
PS417_20650 -1.5 -5.8 hypothetical protein compare
PS417_02070 -1.5 -0.8 membrane protein compare
PS417_23995 -1.5 -0.7 preprotein translocase subunit SecG compare
PS417_02225 -1.5 -1.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_08195 -1.5 -7.3 hypothetical protein compare
PS417_22115 -1.5 -2.4 transcriptional regulator compare
PS417_22195 -1.5 -3.8 peptidase compare
PS417_19600 -1.5 -1.0 exonuclease compare
PS417_15095 -1.5 -2.2 hypothetical protein compare
PS417_25790 -1.5 -2.5 aminoglycoside phosphotransferase compare
PS417_22895 -1.4 -4.5 tyrosine recombinase XerD compare
PS417_15115 -1.4 -3.3 exonuclease SbcD compare
PS417_19650 -1.4 -4.0 chemotaxis protein CheW compare
PS417_04415 -1.4 -2.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_08225 -1.4 -3.7 acetolactate synthase compare
PS417_22575 -1.4 -4.6 exonuclease I compare
PS417_08945 -1.4 -4.9 heat shock protein 90 compare
PS417_12310 -1.4 -4.8 methionine synthase compare
PS417_07165 -1.4 -2.9 dihydrodipicolinate synthase compare
PS417_18710 -1.4 -3.9 hypothetical protein compare
PS417_09470 -1.4 -1.2 hypothetical protein compare
PS417_01115 -1.4 -1.3 serine acetyltransferase compare
PS417_09965 -1.4 -6.8 hypothetical protein compare
PS417_25835 -1.4 -8.1 hypothetical protein compare
PS417_08540 -1.4 -1.2 RNA helicase compare
PS417_25715 -1.3 -2.9 anthranilate phosphoribosyltransferase compare
PS417_16490 -1.3 -0.7 cell division protein FtsK compare
PS417_02950 -1.3 -2.5 tRNA-dihydrouridine synthase B compare
PS417_26995 -1.3 -6.0 phosphoserine phosphatase compare
PS417_04475 -1.3 -3.2 hypothetical protein compare
PS417_01580 -1.3 -1.0 imidazole glycerol phosphate synthase compare
PS417_15665 -1.3 -1.6 hypothetical protein compare
PS417_13870 -1.3 -2.5 hypothetical protein compare
PS417_08580 -1.3 -4.0 histidine kinase compare
PS417_04070 -1.3 -4.7 porin compare
PS417_24585 -1.3 -6.1 AMP nucleosidase compare
PS417_26335 -1.3 -1.1 BetI family transcriptional regulator compare
PS417_25840 -1.3 -6.8 SpoVR family protein compare
PS417_13895 -1.3 -1.8 chemotaxis protein CheB compare
PS417_08190 -1.3 -8.6 membrane protein compare
PS417_15885 -1.3 -1.7 GCN5 family acetyltransferase compare
PS417_27115 -1.3 -6.0 putrescine ABC transporter, ATPase component (from data) compare
PS417_04685 -1.3 -4.1 histidine kinase compare
PS417_01550 -1.3 -3.4 cell envelope biogenesis protein AsmA compare
PS417_07615 -1.3 -3.4 TetR family transcriptional regulator compare
PS417_09140 -1.3 -2.4 biopolymer transporter ExbB compare
PS417_17705 -1.3 -2.1 LacI family transcriptional regulator compare
PS417_01920 -1.3 -0.5 ATP-dependent protease subunit HslV compare
PS417_07140 -1.3 -1.4 peptidase M48 compare
PS417_06145 -1.3 -0.7 hypothetical protein compare
PS417_27290 -1.3 -1.1 hypothetical protein compare
PS417_06530 -1.3 -1.3 membrane protein compare
PS417_00185 -1.2 -1.2 tryptophan synthase subunit beta compare
PS417_25830 -1.2 -5.9 serine/threonine protein kinase compare
PS417_01400 -1.2 -1.6 hypothetical protein compare
PS417_05160 -1.2 -0.8 DNA polymerase III subunit chi compare
PS417_08125 -1.2 -0.3 prephenate dehydratase compare
PS417_22690 -1.2 -1.9 phosphogluconate dehydratase compare
PS417_27105 -1.2 -2.8 spermidine/putrescine ABC transporter permease compare
PS417_20055 -1.2 -2.6 cob(II)yrinic acid a,c-diamide reductase compare
PS417_06680 -1.2 -3.1 nuclease PIN compare
PS417_22780 -1.2 -2.2 XRE family transcriptional regulator compare
PS417_26510 -1.2 -3.9 5,10-methylenetetrahydrofolate reductase compare
PS417_27295 -1.2 -2.4 hypothetical protein compare
PS417_22565 -1.2 -0.3 formyltetrahydrofolate deformylase compare
PS417_10810 -1.2 -1.3 hypothetical protein compare
PS417_27125 -1.2 -5.5 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_00975 -1.2 -1.0 hypothetical protein compare
PS417_12190 -1.2 -1.3 microcin ABC transporter ATP-binding protein compare
PS417_23825 -1.2 -4.5 penicillin-binding protein compare
PS417_28225 -1.2 -1.0 hypothetical protein compare
PS417_22445 -1.2 -1.4 ATP-dependent DNA helicase RuvB compare
PS417_06775 -1.2 -2.6 antibiotic transporter compare
PS417_02255 -1.2 -1.0 lipopolysaccharide kinase compare
PS417_06205 -1.2 -3.4 methionine aminopeptidase compare
PS417_04340 -1.2 -2.3 ribosome hibernation promoting factor HPF compare
PS417_27595 -1.2 -1.2 recombinase XerC compare
PS417_09210 -1.2 -1.0 TetR family transcriptional regulator compare
PS417_03260 -1.2 -0.4 5S ribosomal RNA compare
PS417_13165 -1.2 -1.5 peroxidase compare
PS417_28080 -1.2 -6.3 phosphate ABC transporter permease compare
PS417_27675 -1.2 -2.4 xanthine phosphoribosyltransferase compare
PS417_08620 -1.2 -0.4 hypothetical protein compare
PS417_21360 -1.2 -0.7 termination factor Rho compare
PS417_04865 -1.1 -2.2 molybdenum cofactor biosynthesis protein MoaC compare
PS417_08170 -1.1 -4.1 capsular biosynthesis protein compare
PS417_01620 -1.1 -1.5 preprotein translocase subunit SecB compare
PS417_19505 -1.1 -1.7 2,4-diaminobutyrate 4-aminotransferase compare
PS417_04435 -1.1 -5.7 uracil phosphoribosyltransferase compare
PS417_04595 -1.1 -0.9 cell division protein MraZ compare
PS417_16715 -1.1 -1.3 DoxX family protein compare
PS417_17590 -1.1 -1.6 ABC transporter substrate-binding protein compare
PS417_00370 -1.1 -0.8 hypothetical protein compare
PS417_21125 -1.1 -4.3 phosphoadenosine phosphosulfate reductase compare
PS417_12205 -1.1 -4.6 hypothetical protein compare
PS417_00405 -1.1 -4.5 DNA polymerase I compare
PS417_11705 -1.1 -2.8 cyclic peptide transporter compare
PS417_02280 -1.1 -0.5 GlcNAc-PI de-N-acetylase compare
PS417_08415 -1.1 -4.3 hypothetical protein compare
PS417_26050 -1.1 -3.4 response regulator compare


Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms