Experiment set34S615 for Pseudomonas simiae WCS417

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Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_27040 -5.3 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_18600 -4.8 -2.9 isopropylmalate isomerase compare
PS417_08245 -4.7 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27435 -4.5 -6.1 polyphosphate kinase compare
PS417_26740 -4.4 -8.0 homoserine acetyltransferase compare
PS417_16990 -4.3 -5.9 acyl-CoA dehydrogenase compare
PS417_03310 -4.0 -7.5 carbonate dehydratase compare
PS417_26890 -3.9 -5.9 dihydroxy-acid dehydratase compare
PS417_23805 -3.7 -4.6 acetolactate synthase 3 regulatory subunit compare
PS417_23800 -3.7 -10.2 ketol-acid reductoisomerase compare
PS417_02510 -3.4 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23810 -3.4 -7.2 acetolactate synthase 3 catalytic subunit compare
PS417_08230 -3.3 -2.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_14065 -3.3 -8.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_23995 -3.3 -0.8 preprotein translocase subunit SecG compare
PS417_02560 -3.2 -1.6 23S rRNA methyltransferase compare
PS417_20635 -3.1 -1.1 ABC transporter ATP-binding protein compare
PS417_04170 -2.9 -3.7 stringent starvation protein A compare
PS417_12855 -2.9 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23775 -2.9 -1.5 exodeoxyribonuclease V subunit beta compare
PS417_23915 -2.8 -3.4 pantoate--beta-alanine ligase compare
PS417_25725 -2.8 -9.9 anthranilate synthase component I compare
PS417_19675 -2.8 -3.6 chemotaxis protein CheY compare
PS417_02895 -2.8 -1.6 precorrin-6Y C5,15-methyltransferase compare
PS417_05595 -2.8 -10.3 ornithine carbamoyltransferase compare
PS417_25720 -2.7 -6.1 anthranilate synthase component II compare
PS417_02415 -2.6 -4.0 phosphoserine phosphatase compare
PS417_25715 -2.6 -4.1 anthranilate phosphoribosyltransferase compare
PS417_18530 -2.5 -3.8 O-succinylhomoserine sulfhydrylase compare
PS417_24710 -2.5 -5.2 lipoprotein compare
PS417_23545 -2.5 -1.3 gamma-glutamyl kinase compare
PS417_18595 -2.5 -2.6 3-isopropylmalate dehydratase compare
PS417_01855 -2.4 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_02975 -2.4 -2.3 3-dehydroquinate dehydratase compare
PS417_18560 -2.4 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26745 -2.4 -4.1 methionine biosynthesis protein MetW compare
PS417_27640 -2.3 -0.6 TetR family transcriptional regulator compare
PS417_16510 -2.3 -2.5 Clp protease ClpX compare
PS417_18585 -2.3 -4.4 3-isopropylmalate dehydrogenase compare
PS417_07595 -2.3 -3.7 PasA protein compare
PS417_05570 -2.3 -4.0 DeoR faimly transcriptional regulator compare
PS417_19415 -2.2 -2.7 allantoinase compare
PS417_27305 -2.2 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
PS417_13510 -2.2 -1.0 polyketide cyclase compare
PS417_23950 -2.2 -0.9 polynucleotide phosphorylase/polyadenylase compare
PS417_16310 -2.2 -3.8 membrane protein compare
PS417_08225 -2.2 -4.7 acetolactate synthase compare
PS417_20025 -2.1 -1.0 alpha-ribazole phosphatase compare
PS417_27195 -2.1 -0.7 N-acetylglutamate synthase compare
PS417_07170 -2.1 -2.0 hypothetical protein compare
PS417_20650 -2.1 -9.1 hypothetical protein compare
PS417_19425 -2.1 -0.7 allantoicase compare
PS417_10040 -2.0 -1.0 MFS transporter compare
PS417_19350 -2.0 -4.0 GTP cyclohydrolase compare
PS417_04220 -2.0 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_04435 -2.0 -9.0 uracil phosphoribosyltransferase compare
PS417_01560 -2.0 -1.7 imidazoleglycerol-phosphate dehydratase compare
PS417_08190 -2.0 -11.7 membrane protein compare
PS417_25710 -1.9 -0.7 indole-3-glycerol-phosphate synthase compare
PS417_25790 -1.9 -2.1 aminoglycoside phosphotransferase compare
PS417_00705 -1.9 -1.2 MarR family transcriptional regulator compare
PS417_09470 -1.9 -1.1 hypothetical protein compare
PS417_23110 -1.9 -5.3 2-isopropylmalate synthase compare
PS417_01575 -1.8 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_08945 -1.8 -5.8 heat shock protein 90 compare
PS417_13455 -1.8 -2.4 alkaline proteinase inhibitor compare
PS417_08195 -1.8 -8.7 hypothetical protein compare
PS417_08335 -1.8 -1.5 hypothetical protein compare
PS417_16490 -1.8 -0.6 cell division protein FtsK compare
PS417_04050 -1.8 -1.5 peptide ABC transporter ATP-binding protein compare
PS417_05985 -1.8 -1.9 chemotaxis protein CheY compare
PS417_20610 -1.8 -1.1 hypothetical protein compare
PS417_01115 -1.7 -1.5 serine acetyltransferase compare
PS417_26530 -1.7 -0.8 hypothetical protein compare
PS417_02980 -1.7 -1.1 chemotaxis protein compare
PS417_22895 -1.7 -5.2 tyrosine recombinase XerD compare
PS417_07120 -1.7 -3.9 RNA polymerase sigma-H factor compare
PS417_12200 -1.7 -3.8 microcin ABC transporter permease compare
PS417_12840 -1.7 -1.9 TetR family transcriptional regulator compare
PS417_17565 -1.7 -1.3 branched-chain amino acid aminotransferase compare
PS417_08205 -1.7 -3.8 acetyltransferase compare
PS417_04420 -1.7 -6.9 histidinol dehydrogenase compare
PS417_22575 -1.7 -6.3 exonuclease I compare
PS417_20130 -1.7 -8.3 dehydrogenase compare
PS417_17630 -1.7 -1.9 RNA polymerase sigma factor compare
PS417_18040 -1.7 -1.2 general secretion pathway protein GspN compare
PS417_08200 -1.7 -2.4 hypothetical protein compare
PS417_27705 -1.7 -1.0 amino acid dehydrogenase compare
PS417_25645 -1.7 -3.6 peptidase M23 compare
PS417_27585 -1.6 -1.4 diaminopimelate epimerase compare
PS417_28070 -1.6 -3.8 phosphate ABC transporter ATP-binding protein compare
PS417_12205 -1.6 -6.0 hypothetical protein compare
PS417_20160 -1.6 -3.2 cysteine synthase compare
PS417_24575 -1.6 -1.0 hypothetical protein compare
PS417_24835 -1.6 -4.0 hypothetical protein compare
PS417_05840 -1.6 -1.8 LuxR family transcriptional regulator compare
PS417_00175 -1.6 -0.9 CigR compare
PS417_08170 -1.5 -3.3 capsular biosynthesis protein compare
PS417_04595 -1.5 -0.9 cell division protein MraZ compare
PS417_16195 -1.5 -0.8 AraC family transcriptional regulator compare
PS417_06375 -1.5 -0.4 deoxycytidine triphosphate deaminase compare
PS417_18885 -1.5 -1.8 GntR family transcriptional regulator compare
PS417_08420 -1.5 -2.1 lipoprotein compare
PS417_07305 -1.5 -1.6 3-beta hydroxysteroid dehydrogenase compare
PS417_28020 -1.5 -2.6 chorismate--pyruvate lyase compare
PS417_15885 -1.5 -1.3 GCN5 family acetyltransferase compare
PS417_06730 -1.5 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_08540 -1.5 -1.0 RNA helicase compare
PS417_23910 -1.5 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_26370 -1.5 -2.6 RNA helicase compare
PS417_22195 -1.5 -3.5 peptidase compare
PS417_15215 -1.5 -1.3 protein activator of alkane oxidation PraA compare
PS417_00370 -1.4 -0.8 hypothetical protein compare
PS417_17805 -1.4 -1.7 microcin B17 processing protein McbC compare
PS417_16005 -1.4 -1.7 ATPase compare
PS417_08360 -1.4 -1.1 DoxX family protein compare
PS417_01145 -1.4 -0.7 taurine transporter ATP-binding subunit compare
PS417_20660 -1.4 -6.8 hypothetical protein compare
PS417_25295 -1.4 -2.0 hypothetical protein compare
PS417_13885 -1.4 -2.2 chemotaxis protein CheY compare
PS417_22690 -1.4 -1.9 phosphogluconate dehydratase compare
PS417_16535 -1.4 -2.2 NUDIX hydrolase compare
PS417_01400 -1.4 -1.4 hypothetical protein compare
PS417_06040 -1.4 -1.9 hypothetical protein compare
PS417_04365 -1.4 -0.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_15085 -1.4 -3.0 ATPase AAA compare
PS417_01290 -1.4 -1.0 ADP-ribose diphosphatase compare
PS417_21000 -1.4 -0.9 CrfX protein compare
PS417_07640 -1.4 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_27110 -1.4 -3.0 spermidine/putrescine ABC transporter permease compare
PS417_02270 -1.4 -2.1 carbamoyltransferase compare
PS417_15705 -1.4 -1.4 nitrate reductase compare
PS417_03495 -1.4 -1.7 type III secretory protein EscS compare
PS417_07865 -1.3 -1.4 hypothetical protein compare
PS417_04685 -1.3 -3.3 histidine kinase compare
PS417_07620 -1.3 -0.4 beta-hexosaminidase compare
PS417_07420 -1.3 -2.2 restriction endonuclease compare
PS417_19650 -1.3 -2.9 chemotaxis protein CheW compare
PS417_12190 -1.3 -3.1 microcin ABC transporter ATP-binding protein compare
PS417_22445 -1.3 -1.5 ATP-dependent DNA helicase RuvB compare
PS417_01580 -1.3 -0.5 imidazole glycerol phosphate synthase compare
PS417_07560 -1.3 -0.8 universal stress protein UspA compare
PS417_24500 -1.3 -1.8 DEAD/DEAH box helicase compare
PS417_19430 -1.3 -2.0 ureidoglycolate hydrolase compare
PS417_08365 -1.3 -0.5 hypothetical protein compare
PS417_00975 -1.3 -1.0 hypothetical protein compare
PS417_01790 -1.3 -6.0 glucan biosynthesis protein G compare
PS417_17125 -1.3 -1.6 transcriptional regulator compare
PS417_24745 -1.3 -0.9 gamma-glutamyl phosphate reductase compare
PS417_27590 -1.3 -5.7 hypothetical protein compare
PS417_02005 -1.3 -4.4 glutamate synthase compare
PS417_05560 -1.3 -1.4 ABC transporter compare
PS417_02000 -1.3 -6.3 glutamate synthase compare
PS417_12490 -1.3 -1.1 autotransporter adhesin compare
PS417_26175 -1.3 -0.6 sarcosine oxidase subunit gamma compare
PS417_04585 -1.3 -0.5 hypothetical protein compare
PS417_03000 -1.2 -2.4 translation initiation factor Sui1 compare
PS417_17560 -1.2 -1.6 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_12195 -1.2 -3.6 ABC transporter permease compare
PS417_23375 -1.2 -1.2 cytochrome C oxidase compare
PS417_08990 -1.2 -2.4 ABC transporter substrate-binding protein compare
PS417_04075 -1.2 -3.7 peptide ABC transporter substrate-binding protein compare
PS417_01850 -1.2 -1.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_20665 -1.2 -3.5 hypothetical protein compare
PS417_11705 -1.2 -2.5 cyclic peptide transporter compare
PS417_22875 -1.2 -1.0 hypothetical protein compare
PS417_15975 -1.2 -1.0 glutamate carboxypeptidase compare
PS417_19805 -1.2 -2.0 flagellar M-ring protein FliF compare
PS417_07635 -1.2 -6.6 transcription-repair coupling factor compare
PS417_19660 -1.2 -5.7 cobalamin biosynthesis protein CobQ compare
PS417_08435 -1.2 -1.2 pilus assembly protein PilZ compare
PS417_19360 -1.2 -1.5 hypothetical protein compare
PS417_20655 -1.2 -6.5 group 1 glycosyl transferase compare
PS417_15035 -1.2 -0.9 alkylhydroperoxidase compare
PS417_04415 -1.2 -3.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_00390 -1.2 -3.0 ABC transporter substrate-binding protein compare
PS417_05820 -1.2 -1.4 recombinase RecX compare
PS417_05235 -1.2 -1.2 peptidase inhibitor I42 compare
PS417_25650 -1.2 -1.2 anhydro-N-acetylmuramic acid kinase compare
PS417_03815 -1.2 -1.4 DNA transporter compare
PS417_19850 -1.2 -5.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_23475 -1.2 -0.9 hypothetical protein compare
PS417_01795 -1.2 -6.2 glucosyltransferase MdoH compare
PS417_09965 -1.1 -5.6 hypothetical protein compare
PS417_07240 -1.1 -2.2 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_05100 -1.1 -0.9 RNA polymerase sigma factor compare
PS417_10425 -1.1 -0.9 hypothetical protein compare
PS417_04070 -1.1 -4.1 porin compare
PS417_07840 -1.1 -2.1 hypothetical protein compare
PS417_21735 -1.1 -5.8 ABC transporter for L-Arginine, permease component 2 (from data) compare
PS417_02575 -1.1 -2.2 membrane protein compare
PS417_27005 -1.1 -0.7 membrane protein compare
PS417_28350 -1.1 -2.9 fatty acid methyltransferase compare
PS417_12375 -1.1 -1.0 serine/threonine protein phosphatase compare
PS417_27425 -1.1 -4.8 exopolyphosphatase compare
PS417_27870 -1.1 -1.3 ATP-dependent DNA helicase RecG compare
PS417_02760 -1.1 -2.2 AraC family transcriptional regulator compare
PS417_15115 -1.1 -2.6 exonuclease SbcD compare
PS417_28140 -1.1 -2.1 asparaginase compare
PS417_05160 -1.1 -0.6 DNA polymerase III subunit chi compare


Specific Phenotypes

For 9 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms