Experiment set34S614 for Pseudomonas simiae WCS417

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Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_16005 -5.0 -2.4 ATPase compare
PS417_27040 -4.4 -3.2 3-phosphoglycerate dehydrogenase compare
PS417_16990 -4.3 -7.8 acyl-CoA dehydrogenase compare
PS417_23805 -4.3 -4.3 acetolactate synthase 3 regulatory subunit compare
PS417_23810 -4.2 -7.0 acetolactate synthase 3 catalytic subunit compare
PS417_23915 -4.2 -3.9 pantoate--beta-alanine ligase compare
PS417_26890 -4.1 -6.9 dihydroxy-acid dehydratase compare
PS417_03310 -4.1 -7.6 carbonate dehydratase compare
PS417_23800 -3.7 -12.1 ketol-acid reductoisomerase compare
PS417_18600 -3.7 -2.8 isopropylmalate isomerase compare
PS417_18585 -3.7 -5.5 3-isopropylmalate dehydrogenase compare
PS417_14065 -3.6 -10.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_20635 -3.4 -1.2 ABC transporter ATP-binding protein compare
PS417_01095 -3.3 -1.4 amino acid ABC transporter ATP-binding protein compare
PS417_24710 -3.2 -5.7 lipoprotein compare
PS417_27435 -3.1 -5.2 polyphosphate kinase compare
PS417_23545 -3.0 -1.5 gamma-glutamyl kinase compare
PS417_04170 -3.0 -3.6 stringent starvation protein A compare
PS417_01290 -2.9 -1.7 ADP-ribose diphosphatase compare
PS417_09210 -2.9 -1.5 TetR family transcriptional regulator compare
PS417_16510 -2.8 -2.7 Clp protease ClpX compare
PS417_25720 -2.7 -7.0 anthranilate synthase component II compare
PS417_05595 -2.7 -8.6 ornithine carbamoyltransferase compare
PS417_18595 -2.7 -3.8 3-isopropylmalate dehydratase compare
PS417_27640 -2.6 -0.6 TetR family transcriptional regulator compare
PS417_13510 -2.6 -1.1 polyketide cyclase compare
PS417_18560 -2.6 -5.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26745 -2.5 -6.1 methionine biosynthesis protein MetW compare
PS417_08620 -2.5 -0.6 hypothetical protein compare
PS417_07640 -2.5 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_19415 -2.5 -2.8 allantoinase compare
PS417_04270 -2.5 -6.2 ribonuclease G compare
PS417_21270 -2.5 -1.5 translation initiation factor 2 compare
PS417_26740 -2.4 -6.6 homoserine acetyltransferase compare
PS417_25725 -2.4 -10.4 anthranilate synthase component I compare
PS417_01560 -2.4 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_27195 -2.4 -0.8 N-acetylglutamate synthase compare
PS417_25650 -2.4 -1.9 anhydro-N-acetylmuramic acid kinase compare
PS417_02560 -2.4 -1.7 23S rRNA methyltransferase compare
PS417_02975 -2.3 -2.9 3-dehydroquinate dehydratase compare
PS417_19425 -2.3 -0.8 allantoicase compare
PS417_23315 -2.3 -1.1 transcriptional regulator compare
PS417_08540 -2.2 -1.3 RNA helicase compare
PS417_04080 -2.2 -2.3 peptide ABC transporter substrate-binding protein compare
PS417_07560 -2.2 -0.9 universal stress protein UspA compare
PS417_02915 -2.2 -3.6 precorrin-3B C17-methyltransferase compare
PS417_08225 -2.2 -4.8 acetolactate synthase compare
PS417_27135 -2.2 -0.5 glutamine synthetase compare
PS417_11825 -2.2 -2.6 transcriptional regulator compare
PS417_00755 -2.2 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_24745 -2.1 -1.9 gamma-glutamyl phosphate reductase compare
PS417_12840 -2.1 -2.7 TetR family transcriptional regulator compare
PS417_02510 -2.1 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_12195 -2.1 -5.8 ABC transporter permease compare
PS417_01855 -2.1 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_27305 -2.0 -5.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_27585 -2.0 -1.5 diaminopimelate epimerase compare
PS417_16490 -2.0 -0.7 cell division protein FtsK compare
PS417_17125 -2.0 -3.5 transcriptional regulator compare
PS417_01575 -2.0 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19605 -2.0 -1.0 hypothetical protein compare
PS417_04220 -2.0 -1.1 4-carboxymuconolactone decarboxylase compare
PS417_18530 -2.0 -3.8 O-succinylhomoserine sulfhydrylase compare
PS417_04420 -2.0 -6.6 histidinol dehydrogenase compare
PS417_25715 -2.0 -3.9 anthranilate phosphoribosyltransferase compare
PS417_10405 -2.0 -0.9 filamentous hemagglutinin compare
PS417_19600 -1.9 -0.9 exonuclease compare
PS417_20130 -1.9 -9.9 dehydrogenase compare
PS417_22375 -1.9 -0.6 cold-shock protein compare
PS417_20610 -1.9 -1.0 hypothetical protein compare
PS417_06530 -1.9 -1.4 membrane protein compare
PS417_22795 -1.9 -1.4 exclusion suppressor FxsA compare
PS417_06375 -1.8 -0.4 deoxycytidine triphosphate deaminase compare
PS417_25790 -1.8 -2.6 aminoglycoside phosphotransferase compare
PS417_27870 -1.8 -1.9 ATP-dependent DNA helicase RecG compare
PS417_11705 -1.8 -2.9 cyclic peptide transporter compare
PS417_23490 -1.8 -0.6 dihydrofolate reductase compare
PS417_24615 -1.8 -0.6 hypothetical protein compare
PS417_10985 -1.8 -0.7 NADH:flavin oxidoreductase compare
PS417_12355 -1.8 -1.6 magnesium chelatase compare
PS417_02575 -1.8 -2.6 membrane protein compare
PS417_20650 -1.7 -8.2 hypothetical protein compare
PS417_23110 -1.7 -5.4 2-isopropylmalate synthase compare
PS417_28220 -1.7 -1.6 LysR family transcriptional regulator compare
PS417_08245 -1.7 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_22620 -1.7 -3.4 pyruvate kinase compare
PS417_27865 -1.7 -1.7 LysR family transcriptional regulator compare
PS417_26605 -1.7 -0.8 malonate decarboxylase subunit beta compare
PS417_17405 -1.7 -2.1 AraC family transcriptional regulator compare
PS417_08220 -1.7 -0.7 epimerase compare
PS417_08200 -1.6 -2.6 hypothetical protein compare
PS417_02675 -1.6 -3.3 ABC transporter ATP-binding protein compare
PS417_16555 -1.6 -1.1 cupin compare
PS417_08685 -1.6 -1.1 flagellar hook-length control protein FliK compare
PS417_08195 -1.6 -8.0 hypothetical protein compare
PS417_07655 -1.6 -2.5 glycerophosphodiester phosphodiesterase compare
PS417_26695 -1.6 -0.7 uracil phosphoribosyltransferase compare
PS417_08945 -1.6 -5.8 heat shock protein 90 compare
PS417_20775 -1.6 -1.6 coproporphyrinogen III oxidase compare
PS417_02980 -1.6 -1.0 chemotaxis protein compare
PS417_21630 -1.5 -1.8 magnesium transporter compare
PS417_24115 -1.5 -1.4 hypothetical protein compare
PS417_12310 -1.5 -5.6 methionine synthase compare
PS417_26850 -1.5 -0.6 twin-arginine translocation pathway signal protein compare
PS417_21695 -1.5 -3.1 succinylglutamate-semialdehyde dehydrogenase compare
PS417_12375 -1.5 -1.6 serine/threonine protein phosphatase compare
PS417_16715 -1.5 -1.4 DoxX family protein compare
PS417_07870 -1.5 -1.9 hypothetical protein compare
PS417_12535 -1.5 -1.6 nitrilase compare
PS417_23390 -1.5 -4.8 ubiquinol oxidase subunit II compare
PS417_00085 -1.5 -1.3 16S rRNA methyltransferase compare
PS417_19675 -1.5 -2.4 chemotaxis protein CheY compare
PS417_01405 -1.5 -1.7 sugar transporter compare
PS417_18395 -1.5 -1.7 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_06675 -1.5 -2.4 ATP-dependent helicase compare
PS417_07770 -1.4 -1.4 hypothetical protein compare
PS417_04185 -1.4 -1.7 hypothetical protein compare
PS417_17240 -1.4 -1.7 trigger factor compare
PS417_02740 -1.4 -1.5 LysR family transcriptional regulator compare
PS417_04340 -1.4 -3.1 ribosome hibernation promoting factor HPF compare
PS417_14980 -1.4 -0.7 universal stress protein UspA compare
PS417_06205 -1.4 -6.4 methionine aminopeptidase compare
PS417_05445 -1.4 -1.0 DNA mismatch repair protein MutT compare
PS417_24500 -1.4 -2.0 DEAD/DEAH box helicase compare
PS417_15200 -1.4 -1.9 protein activator of alkane oxidation PraB compare
PS417_17565 -1.4 -1.9 branched-chain amino acid aminotransferase compare
PS417_19350 -1.4 -2.8 GTP cyclohydrolase compare
PS417_06200 -1.4 -4.4 protein-PII uridylyltransferase compare
PS417_05545 -1.4 -4.5 amino acid ABC transporter ATP-binding protein compare
PS417_02890 -1.4 -2.9 cobalt-precorrin-6X reductase compare
PS417_23370 -1.4 -2.3 protoheme IX farnesyltransferase compare
PS417_24085 -1.4 -1.9 protein RnfH compare
PS417_13175 -1.3 -1.5 iron transporter compare
PS417_26240 -1.3 -1.4 N-methylproline demethylase compare
PS417_01565 -1.3 -1.4 imidazole glycerol phosphate synthase compare
PS417_12280 -1.3 -1.3 MerR family transcriptional regulator compare
PS417_24800 -1.3 -2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_23775 -1.3 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_21830 -1.3 -1.7 TetR family transcriptional regulator compare
PS417_26225 -1.3 -2.7 electron transfer flavoprotein subunit beta compare
PS417_07575 -1.3 -2.9 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_08170 -1.3 -4.6 capsular biosynthesis protein compare
PS417_21210 -1.3 -1.5 amidotransferase compare
PS417_21575 -1.3 -3.8 chemotaxis protein compare
PS417_12205 -1.3 -3.9 hypothetical protein compare
PS417_01580 -1.3 -0.7 imidazole glycerol phosphate synthase compare
PS417_26715 -1.3 -2.6 peptidase P60 compare
PS417_10040 -1.3 -0.8 MFS transporter compare
PS417_00510 -1.3 -0.7 membrane protein compare
PS417_11950 -1.3 -1.1 hypothetical protein compare
PS417_06780 -1.3 -1.8 TetR family transcriptional regulator compare
PS417_26535 -1.3 -2.9 cytochrome B561 compare
PS417_19835 -1.3 -0.7 flagellar biosynthesis protein FliS compare
PS417_23105 -1.3 -1.1 hypothetical protein compare
PS417_01920 -1.3 -0.4 ATP-dependent protease subunit HslV compare
PS417_22815 -1.3 -1.7 permease compare
PS417_24785 -1.3 -1.6 nucleoside-diphosphate sugar epimerase compare
PS417_22565 -1.3 -0.3 formyltetrahydrofolate deformylase compare
PS417_04475 -1.3 -2.8 hypothetical protein compare
PS417_08125 -1.3 -0.3 prephenate dehydratase compare
PS417_00845 -1.3 -0.9 transcriptional regulator compare
PS417_22520 -1.3 -0.8 histidine kinase compare
PS417_04585 -1.3 -0.7 hypothetical protein compare
PS417_22895 -1.3 -4.3 tyrosine recombinase XerD compare
PS417_15115 -1.2 -2.9 exonuclease SbcD compare
PS417_19705 -1.2 -1.4 flagellar biosynthesis regulator FlhF compare
PS417_04435 -1.2 -6.1 uracil phosphoribosyltransferase compare
PS417_06245 -1.2 -1.0 zinc metallopeptidase RseP compare
PS417_25645 -1.2 -3.3 peptidase M23 compare
PS417_25120 -1.2 -2.6 capsular biosynthesis protein compare
PS417_08320 -1.2 -1.6 metal-chelation protein CHAD compare
PS417_05555 -1.2 -2.7 amino acid ABC transporter permease compare
PS417_08205 -1.2 -3.4 acetyltransferase compare
PS417_13800 -1.2 -1.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_20665 -1.2 -5.0 hypothetical protein compare
PS417_08580 -1.2 -3.0 histidine kinase compare
PS417_15095 -1.2 -1.8 hypothetical protein compare
PS417_22735 -1.2 -6.2 thiol oxidoreductase compare
PS417_00705 -1.2 -1.0 MarR family transcriptional regulator compare
PS417_23580 -1.2 -0.9 peptidylprolyl isomerase compare
PS417_04320 -1.2 -3.2 divalent cation transporter compare
PS417_12855 -1.2 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17855 -1.2 -2.1 major facilitator transporter compare
PS417_15135 -1.2 -0.9 hypothetical protein compare
PS417_05975 -1.2 -0.5 chemotaxis protein CheW compare
PS417_03260 -1.2 -0.4 5S ribosomal RNA compare
PS417_04415 -1.2 -3.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_08090 -1.2 -0.4 3-oxoacyl-ACP reductase compare
PS417_04195 -1.2 -2.6 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
PS417_07170 -1.2 -2.5 hypothetical protein compare
PS417_07240 -1.2 -3.4 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_26370 -1.2 -1.9 RNA helicase compare
PS417_27115 -1.2 -4.6 putrescine ABC transporter, ATPase component (from data) compare
PS417_18455 -1.1 -1.4 hypothetical protein compare
PS417_25840 -1.1 -5.3 SpoVR family protein compare
PS417_05550 -1.1 -2.4 amino acid ABC transporter permease compare
PS417_09150 -1.1 -1.4 energy transducer TonB compare
PS417_18710 -1.1 -3.1 hypothetical protein compare
PS417_06060 -1.1 -4.7 phosphoenolpyruvate carboxylase compare
PS417_28325 -1.1 -1.2 phosphoribosyl-AMP cyclohydrolase compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms