Experiment set34S613 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_27040 -4.6 -4.6 3-phosphoglycerate dehydrogenase compare
PS417_23995 -3.7 -1.3 preprotein translocase subunit SecG compare
PS417_23805 -3.5 -5.8 acetolactate synthase 3 regulatory subunit compare
PS417_23800 -3.5 -12.6 ketol-acid reductoisomerase compare
PS417_18595 -3.4 -5.4 3-isopropylmalate dehydratase compare
PS417_18530 -3.3 -6.5 O-succinylhomoserine sulfhydrylase compare
PS417_25720 -3.3 -8.9 anthranilate synthase component II compare
PS417_13510 -3.3 -1.6 polyketide cyclase compare
PS417_25725 -3.2 -13.4 anthranilate synthase component I compare
PS417_23810 -3.2 -10.2 acetolactate synthase 3 catalytic subunit compare
PS417_26890 -3.1 -6.3 dihydroxy-acid dehydratase compare
PS417_18585 -3.0 -6.6 3-isopropylmalate dehydrogenase compare
PS417_02415 -2.9 -4.8 phosphoserine phosphatase compare
PS417_18560 -2.9 -6.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_03310 -2.9 -7.7 carbonate dehydratase compare
PS417_07170 -2.8 -2.7 hypothetical protein compare
PS417_12855 -2.8 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_16005 -2.8 -2.4 ATPase compare
PS417_18600 -2.7 -3.9 isopropylmalate isomerase compare
PS417_05595 -2.7 -10.5 ornithine carbamoyltransferase compare
PS417_26745 -2.6 -7.3 methionine biosynthesis protein MetW compare
PS417_26740 -2.6 -6.1 homoserine acetyltransferase compare
PS417_27195 -2.5 -1.2 N-acetylglutamate synthase compare
PS417_02975 -2.5 -3.7 3-dehydroquinate dehydratase compare
PS417_25710 -2.4 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_23915 -2.3 -4.6 pantoate--beta-alanine ligase compare
PS417_23545 -2.3 -1.9 gamma-glutamyl kinase compare
PS417_01850 -2.2 -2.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25650 -2.1 -2.4 anhydro-N-acetylmuramic acid kinase compare
PS417_06245 -2.1 -1.9 zinc metallopeptidase RseP compare
PS417_24745 -2.0 -1.9 gamma-glutamyl phosphate reductase compare
PS417_04585 -2.0 -1.2 hypothetical protein compare
PS417_02005 -2.0 -7.8 glutamate synthase compare
PS417_25715 -2.0 -3.8 anthranilate phosphoribosyltransferase compare
PS417_02510 -2.0 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02950 -2.0 -3.6 tRNA-dihydrouridine synthase B compare
PS417_15975 -2.0 -2.4 glutamate carboxypeptidase compare
PS417_02000 -1.9 -7.8 glutamate synthase compare
PS417_06375 -1.9 -0.6 deoxycytidine triphosphate deaminase compare
PS417_09470 -1.9 -1.8 hypothetical protein compare
PS417_08540 -1.9 -1.8 RNA helicase compare
PS417_20775 -1.9 -2.5 coproporphyrinogen III oxidase compare
PS417_21630 -1.9 -2.3 magnesium transporter compare
PS417_22690 -1.9 -3.4 phosphogluconate dehydratase compare
PS417_01290 -1.9 -2.1 ADP-ribose diphosphatase compare
PS417_01575 -1.8 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27835 -1.8 -4.3 endoribonuclease compare
PS417_04415 -1.8 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02270 -1.7 -3.6 carbamoyltransferase compare
PS417_24500 -1.7 -2.3 DEAD/DEAH box helicase compare
PS417_01565 -1.7 -5.0 imidazole glycerol phosphate synthase compare
PS417_21255 -1.6 -2.5 hypothetical protein compare
PS417_06645 -1.6 -6.4 RNA polymerase-associated protein RapA compare
PS417_23110 -1.6 -5.3 2-isopropylmalate synthase compare
PS417_27005 -1.6 -1.3 membrane protein compare
PS417_00185 -1.6 -1.4 tryptophan synthase subunit beta compare
PS417_26985 -1.5 -3.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_16720 -1.5 -1.2 membrane protein compare
PS417_07560 -1.5 -1.3 universal stress protein UspA compare
PS417_22445 -1.5 -2.3 ATP-dependent DNA helicase RuvB compare
PS417_04050 -1.5 -2.3 peptide ABC transporter ATP-binding protein compare
PS417_27585 -1.5 -1.7 diaminopimelate epimerase compare
PS417_00065 -1.5 -1.3 3-methyladenine DNA glycosylase compare
PS417_06600 -1.4 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_04420 -1.4 -7.0 histidinol dehydrogenase compare
PS417_06095 -1.4 -1.6 energy transducer TonB compare
PS417_01580 -1.4 -1.0 imidazole glycerol phosphate synthase compare
PS417_27435 -1.4 -4.5 polyphosphate kinase compare
PS417_04170 -1.4 -5.0 stringent starvation protein A compare
PS417_22565 -1.4 -0.4 formyltetrahydrofolate deformylase compare
PS417_27870 -1.4 -2.0 ATP-dependent DNA helicase RecG compare
PS417_28080 -1.4 -8.8 phosphate ABC transporter permease compare
PS417_07165 -1.3 -3.0 dihydrodipicolinate synthase compare
PS417_02280 -1.3 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_08620 -1.3 -0.6 hypothetical protein compare
PS417_13990 -1.3 -2.7 LysR family transcriptional regulator compare
PS417_08245 -1.3 -1.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_23370 -1.3 -3.2 protoheme IX farnesyltransferase compare
PS417_13205 -1.3 -2.0 isochorismate-pyruvate lyase compare
PS417_12345 -1.3 -2.6 cobalamin biosynthesis protein CobW compare
PS417_20125 -1.3 -2.8 phosphoribosylglycinamide formyltransferase compare
PS417_19955 -1.3 -1.5 hypothetical protein compare
PS417_08685 -1.2 -1.6 flagellar hook-length control protein FliK compare
PS417_08130 -1.2 -1.6 aspartate aminotransferase compare
PS417_04365 -1.2 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23390 -1.2 -6.6 ubiquinol oxidase subunit II compare
PS417_20635 -1.2 -1.2 ABC transporter ATP-binding protein compare
PS417_28020 -1.2 -3.0 chorismate--pyruvate lyase compare
PS417_11430 -1.2 -4.4 EamA compare
PS417_04410 -1.2 -2.2 hypothetical protein compare
PS417_08335 -1.2 -1.9 hypothetical protein compare
PS417_18690 -1.2 -3.4 aromatic amino acid aminotransferase compare
PS417_02225 -1.2 -1.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_16555 -1.2 -1.3 cupin compare
PS417_26370 -1.1 -2.7 RNA helicase compare
PS417_26990 -1.1 -0.5 RNA pyrophosphohydrolase compare
PS417_28070 -1.1 -4.3 phosphate ABC transporter ATP-binding protein compare
PS417_13455 -1.1 -2.5 alkaline proteinase inhibitor compare
PS417_17705 -1.1 -2.7 LacI family transcriptional regulator compare
PS417_22620 -1.1 -2.7 pyruvate kinase compare
PS417_16990 -1.1 -4.7 acyl-CoA dehydrogenase compare
PS417_02555 -1.1 -4.2 exoribonuclease R compare
PS417_00085 -1.1 -1.3 16S rRNA methyltransferase compare
PS417_18730 -1.0 -2.1 ABC transporter permease compare
PS417_22520 -1.0 -1.1 histidine kinase compare
PS417_01560 -1.0 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_04080 -1.0 -2.8 peptide ABC transporter substrate-binding protein compare
PS417_23900 -1.0 -5.6 poly(A) polymerase compare
PS417_01855 -1.0 -1.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_08825 -1.0 -3.0 TetR family transcriptional regulator compare
PS417_22450 -1.0 -0.6 ATP-dependent DNA helicase RuvA compare
PS417_08225 -1.0 -4.8 acetolactate synthase compare
PS417_06680 -1.0 -2.3 nuclease PIN compare
PS417_08580 -1.0 -4.0 histidine kinase compare
PS417_02485 -1.0 -0.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_07470 -1.0 -0.8 hypothetical protein compare
PS417_27135 -1.0 -0.5 glutamine synthetase compare
PS417_15665 -1.0 -1.7 hypothetical protein compare
PS417_15510 -1.0 -1.4 hypothetical protein compare
PS417_08170 -1.0 -4.0 capsular biosynthesis protein compare
PS417_18395 -1.0 -2.0 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_07565 -1.0 -1.4 hypothetical protein compare
PS417_21070 -1.0 -1.8 aconitate hydratase compare
PS417_15465 -1.0 -2.3 carboxynorspermidine decarboxylase compare
PS417_16475 -1.0 -2.4 camphor resistance protein CrcB compare
PS417_17440 -1.0 -1.7 beta-lactamase compare
PS417_00295 -1.0 -3.3 hypothetical protein compare
PS417_25155 -1.0 -1.7 hypothetical protein compare
PS417_20785 -1.0 -0.6 transcriptional regulator compare
PS417_16520 -1.0 -1.8 cold-shock protein compare
PS417_00510 -1.0 -0.9 membrane protein compare
PS417_22815 -1.0 -2.1 permease compare
PS417_26730 -1.0 -0.4 pyrroline-5-carboxylate reductase compare
PS417_09420 -1.0 -1.7 LysR family transcriptional regulator compare
PS417_21655 -0.9 -0.8 aspartate kinase compare
PS417_23385 -0.9 -4.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_02560 -0.9 -1.4 23S rRNA methyltransferase compare
PS417_18130 -0.9 -2.8 ABC transporter substrate-binding protein compare
PS417_28075 -0.9 -3.3 phosphate ABC transporter permease compare
PS417_13950 -0.9 -3.1 LuxR family transcriptional regulator compare
PS417_19350 -0.9 -3.5 GTP cyclohydrolase compare
PS417_10025 -0.9 -1.3 bacteriophage lambda NinG family protein compare
PS417_02255 -0.9 -1.3 lipopolysaccharide kinase compare
PS417_05815 -0.9 -2.3 recombinase RecA compare
PS417_17125 -0.9 -2.3 transcriptional regulator compare
PS417_27105 -0.9 -3.0 spermidine/putrescine ABC transporter permease compare
PS417_00390 -0.9 -3.2 ABC transporter substrate-binding protein compare
PS417_19285 -0.9 -1.1 ankyrin compare
PS417_11805 -0.9 -3.8 D-threo-aldose 1-dehydrogenase compare
PS417_18250 -0.9 -3.3 chemotaxis protein compare
PS417_21990 -0.9 -1.3 LacI family transcriptional regulator compare
PS417_01570 -0.9 -1.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_04960 -0.9 -1.3 hypothetical protein compare
PS417_23380 -0.8 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_21125 -0.8 -4.7 phosphoadenosine phosphosulfate reductase compare
PS417_16665 -0.8 -1.3 hypothetical protein compare
PS417_23375 -0.8 -1.3 cytochrome C oxidase compare
PS417_28085 -0.8 -6.9 phosphate-binding protein compare
PS417_19415 -0.8 -1.9 allantoinase compare
PS417_02980 -0.8 -1.1 chemotaxis protein compare
PS417_08535 -0.8 -2.9 enoyl-CoA hydratase compare
PS417_17780 -0.8 -0.9 Ais protein compare
PS417_21780 -0.8 -2.4 argininosuccinate lyase compare
PS417_08665 -0.8 -3.2 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_10810 -0.8 -1.1 hypothetical protein compare
PS417_14540 -0.8 -1.1 cytochrome C oxidase subunit III compare
PS417_17735 -0.8 -1.9 LacI family transcriptional regulator compare
PS417_03550 -0.8 -2.1 hypothetical protein compare
PS417_06845 -0.8 -0.9 lipoprotein compare
PS417_04380 -0.8 -0.4 ABC transporter permease compare
PS417_17330 -0.8 -2.5 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_03920 -0.8 -2.3 dephospho-CoA kinase compare
PS417_01410 -0.8 -3.0 transporter compare
PS417_17610 -0.8 -1.3 AsnC family transcriptional regulator compare
PS417_26995 -0.8 -3.7 phosphoserine phosphatase compare
PS417_12035 -0.8 -1.6 dihydroxyacetone kinase compare
PS417_01970 -0.8 -2.8 pilus assembly protein compare
PS417_22115 -0.8 -2.5 transcriptional regulator compare
PS417_21735 -0.8 -4.7 ABC transporter for L-Arginine, permease component 2 (from data) compare
PS417_23910 -0.8 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_00515 -0.8 -5.0 membrane protein compare
PS417_01380 -0.8 -2.3 nucleotide cyclase compare
PS417_00380 -0.8 -2.5 zinc ABC transporter ATP-binding protein compare
PS417_01750 -0.8 -1.2 histidine ammonia-lyase compare
PS417_18780 -0.7 -1.1 flavin reductase compare
PS417_07640 -0.7 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_04650 -0.7 -0.3 D-alanine--D-alanine ligase compare
PS417_16750 -0.7 -1.6 ABC transporter ATP-binding protein compare
PS417_20650 -0.7 -4.7 hypothetical protein compare
PS417_01920 -0.7 -0.5 ATP-dependent protease subunit HslV compare
PS417_21360 -0.7 -0.7 termination factor Rho compare
PS417_03380 -0.7 -0.7 hypothetical protein compare
PS417_26005 -0.7 -4.3 biotin synthase compare
PS417_02575 -0.7 -1.5 membrane protein compare
PS417_04270 -0.7 -4.3 ribonuclease G compare
PS417_20725 -0.7 -1.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_21870 -0.7 -1.8 glycerophosphodiester phosphodiesterase compare
PS417_23770 -0.7 -0.5 exodeoxyribonuclease V subunit alpha compare
PS417_06175 -0.7 -2.2 cysteine sulfinate desulfinase compare
PS417_07870 -0.7 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in in planta experiments

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms