Experiment set34S611 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.1 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_23915 -3.7 -4.9 pantoate--beta-alanine ligase compare
PS417_23810 -3.5 -10.5 acetolactate synthase 3 catalytic subunit compare
PS417_21480 -3.5 -2.0 23S rRNA pseudouridylate synthase compare
PS417_18585 -3.3 -5.2 3-isopropylmalate dehydrogenase compare
PS417_23800 -3.2 -13.7 ketol-acid reductoisomerase compare
PS417_25720 -3.1 -8.2 anthranilate synthase component II compare
PS417_23805 -3.0 -6.4 acetolactate synthase 3 regulatory subunit compare
PS417_02415 -3.0 -5.3 phosphoserine phosphatase compare
PS417_18560 -3.0 -7.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_24745 -2.7 -2.6 gamma-glutamyl phosphate reductase compare
PS417_07560 -2.7 -1.5 universal stress protein UspA compare
PS417_21630 -2.6 -2.5 magnesium transporter compare
PS417_18600 -2.6 -3.1 isopropylmalate isomerase compare
PS417_25725 -2.6 -11.4 anthranilate synthase component I compare
PS417_27195 -2.6 -1.2 N-acetylglutamate synthase compare
PS417_16005 -2.6 -3.5 ATPase compare
PS417_02000 -2.5 -12.4 glutamate synthase compare
PS417_26890 -2.4 -7.8 dihydroxy-acid dehydratase compare
PS417_07170 -2.4 -3.6 hypothetical protein compare
PS417_04170 -2.4 -7.6 stringent starvation protein A compare
PS417_05595 -2.3 -9.8 ornithine carbamoyltransferase compare
PS417_27585 -2.3 -2.5 diaminopimelate epimerase compare
PS417_02005 -2.3 -9.5 glutamate synthase compare
PS417_23910 -2.3 -6.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_03310 -2.3 -5.6 carbonate dehydratase compare
PS417_18530 -2.2 -5.0 O-succinylhomoserine sulfhydrylase compare
PS417_26695 -2.2 -1.0 uracil phosphoribosyltransferase compare
PS417_26740 -2.1 -8.9 homoserine acetyltransferase compare
PS417_22445 -2.1 -2.8 ATP-dependent DNA helicase RuvB compare
PS417_06645 -2.1 -7.8 RNA polymerase-associated protein RapA compare
PS417_22620 -2.1 -3.8 pyruvate kinase compare
PS417_28220 -2.0 -2.1 LysR family transcriptional regulator compare
PS417_16555 -2.0 -1.6 cupin compare
PS417_02560 -2.0 -2.2 23S rRNA methyltransferase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_00185 -1.9 -1.3 tryptophan synthase subunit beta compare
PS417_00085 -1.9 -1.7 16S rRNA methyltransferase compare
PS417_26745 -1.9 -6.3 methionine biosynthesis protein MetW compare
PS417_07620 -1.9 -0.8 beta-hexosaminidase compare
PS417_04365 -1.9 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_18595 -1.8 -3.9 3-isopropylmalate dehydratase compare
PS417_25715 -1.8 -4.3 anthranilate phosphoribosyltransferase compare
PS417_27835 -1.7 -7.3 endoribonuclease compare
PS417_27870 -1.7 -2.3 ATP-dependent DNA helicase RecG compare
PS417_06680 -1.7 -2.6 nuclease PIN compare
PS417_22570 -1.7 -0.6 H-NS histone compare
PS417_01560 -1.7 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_25990 -1.7 -4.2 malonyl-CoA O-methyltransferase compare
PS417_02510 -1.6 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_13510 -1.6 -1.3 polyketide cyclase compare
PS417_12855 -1.6 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04585 -1.6 -1.3 hypothetical protein compare
PS417_23110 -1.5 -5.7 2-isopropylmalate synthase compare
PS417_26005 -1.5 -7.3 biotin synthase compare
PS417_02280 -1.5 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_04420 -1.5 -7.2 histidinol dehydrogenase compare
PS417_06245 -1.5 -1.4 zinc metallopeptidase RseP compare
PS417_01950 -1.4 -4.9 malate dehydrogenase compare
PS417_22520 -1.4 -1.3 histidine kinase compare
PS417_10040 -1.4 -1.3 MFS transporter compare
PS417_22565 -1.4 -0.5 formyltetrahydrofolate deformylase compare
PS417_01920 -1.4 -0.6 ATP-dependent protease subunit HslV compare
PS417_18395 -1.4 -2.5 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_08090 -1.4 -0.6 3-oxoacyl-ACP reductase compare
PS417_01580 -1.4 -1.4 imidazole glycerol phosphate synthase compare
PS417_05445 -1.4 -1.5 DNA mismatch repair protein MutT compare
PS417_02475 -1.4 -2.2 N-acetylmuramoyl-L-alanine amidase compare
PS417_08335 -1.4 -1.8 hypothetical protein compare
PS417_21000 -1.4 -1.5 CrfX protein compare
PS417_26370 -1.4 -3.1 RNA helicase compare
PS417_20125 -1.4 -2.5 phosphoribosylglycinamide formyltransferase compare
PS417_01565 -1.4 -4.5 imidazole glycerol phosphate synthase compare
PS417_12310 -1.3 -5.2 methionine synthase compare
PS417_03300 -1.3 -2.2 alanine acetyltransferase compare
PS417_04080 -1.3 -2.9 peptide ABC transporter substrate-binding protein compare
PS417_06675 -1.3 -2.5 ATP-dependent helicase compare
PS417_00220 -1.3 -1.6 hypothetical protein compare
PS417_12355 -1.3 -1.9 magnesium chelatase compare
PS417_06530 -1.3 -1.7 membrane protein compare
PS417_22815 -1.3 -2.5 permease compare
PS417_27435 -1.3 -4.8 polyphosphate kinase compare
PS417_08170 -1.3 -5.2 capsular biosynthesis protein compare
PS417_08730 -1.3 -1.8 cytochrome C compare
PS417_04410 -1.3 -1.5 hypothetical protein compare
PS417_20635 -1.2 -1.2 ABC transporter ATP-binding protein compare
PS417_23385 -1.2 -5.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_23375 -1.2 -1.9 cytochrome C oxidase compare
PS417_28050 -1.2 -3.2 hypothetical protein compare
PS417_04415 -1.2 -4.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02975 -1.2 -2.5 3-dehydroquinate dehydratase compare
PS417_26175 -1.2 -1.0 sarcosine oxidase subunit gamma compare
PS417_26990 -1.2 -0.5 RNA pyrophosphohydrolase compare
PS417_25645 -1.2 -3.6 peptidase M23 compare
PS417_21870 -1.2 -2.0 glycerophosphodiester phosphodiesterase compare
PS417_23775 -1.1 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_22450 -1.1 -0.6 ATP-dependent DNA helicase RuvA compare
PS417_01575 -1.1 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19955 -1.1 -1.3 hypothetical protein compare
PS417_25650 -1.1 -1.4 anhydro-N-acetylmuramic acid kinase compare
PS417_11810 -1.1 -1.3 oxidoreductase compare
PS417_23545 -1.1 -1.3 gamma-glutamyl kinase compare
PS417_01620 -1.1 -1.7 preprotein translocase subunit SecB compare
PS417_17645 -1.1 -1.6 RND transporter compare
PS417_16990 -1.1 -5.5 acyl-CoA dehydrogenase compare
PS417_20785 -1.1 -0.7 transcriptional regulator compare
PS417_28070 -1.1 -3.7 phosphate ABC transporter ATP-binding protein compare
PS417_25315 -1.1 -1.3 membrane protein compare
PS417_00535 -1.1 -2.1 Holliday junction resolvase compare
PS417_20880 -1.1 -1.9 GntR family transcriptional regulator compare
PS417_01850 -1.1 -2.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_11830 -1.1 -2.1 membrane protein compare
PS417_06635 -1.1 -1.3 ferredoxin compare
PS417_27135 -1.1 -0.5 glutamine synthetase compare
PS417_26540 -1.1 -6.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_02555 -1.0 -4.7 exoribonuclease R compare
PS417_22780 -1.0 -2.9 XRE family transcriptional regulator compare
PS417_13620 -1.0 -1.2 thermostable hemolysin compare
PS417_16475 -1.0 -2.7 camphor resistance protein CrcB compare
PS417_01715 -1.0 -1.1 hypothetical protein compare
PS417_03560 -1.0 -0.7 GTP-binding protein compare
PS417_26995 -1.0 -4.0 phosphoserine phosphatase compare
PS417_07595 -1.0 -2.3 PasA protein compare
PS417_15030 -1.0 -1.1 short-chain dehydrogenase compare
PS417_13455 -1.0 -2.0 alkaline proteinase inhibitor compare
PS417_26730 -1.0 -0.5 pyrroline-5-carboxylate reductase compare
PS417_27245 -1.0 -1.6 aminotransferase DegT compare
PS417_23995 -1.0 -0.7 preprotein translocase subunit SecG compare
PS417_01855 -1.0 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_08245 -1.0 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_28515 -1.0 -1.5 16S rRNA methyltransferase compare
PS417_17705 -1.0 -2.6 LacI family transcriptional regulator compare
PS417_19350 -1.0 -3.0 GTP cyclohydrolase compare
PS417_04380 -1.0 -0.5 ABC transporter permease compare
PS417_14425 -1.0 -2.0 alkylhydroperoxidase compare
PS417_14940 -1.0 -1.3 LysR family transcriptional regulator compare
PS417_18690 -1.0 -2.1 aromatic amino acid aminotransferase compare
PS417_15665 -1.0 -1.3 hypothetical protein compare
PS417_08685 -1.0 -1.3 flagellar hook-length control protein FliK compare
PS417_07640 -1.0 -2.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_17565 -0.9 -1.8 branched-chain amino acid aminotransferase compare
PS417_16520 -0.9 -1.7 cold-shock protein compare
PS417_08540 -0.9 -1.2 RNA helicase compare
PS417_28080 -0.9 -6.2 phosphate ABC transporter permease compare
PS417_01285 -0.9 -1.4 haloacid dehalogenase compare
PS417_02890 -0.9 -2.6 cobalt-precorrin-6X reductase compare
PS417_03005 -0.9 -3.7 arginine decarboxylase compare
PS417_18425 -0.9 -1.2 sporulation protein compare
PS417_09235 -0.9 -0.9 molecular chaperone compare
PS417_21125 -0.9 -4.9 phosphoadenosine phosphosulfate reductase compare
PS417_26000 -0.9 -4.1 8-amino-7-oxononanoate synthase compare
PS417_17590 -0.9 -1.7 ABC transporter substrate-binding protein compare
PS417_12485 -0.9 -3.5 hypothetical protein compare
PS417_12660 -0.9 -1.2 hypothetical protein compare
PS417_04195 -0.9 -3.5 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
PS417_22575 -0.9 -4.9 exonuclease I compare
PS417_08025 -0.9 -1.4 acetylornithine aminotransferase compare
PS417_23390 -0.9 -4.0 ubiquinol oxidase subunit II compare
PS417_01095 -0.9 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_28040 -0.9 -2.2 histidine kinase compare
PS417_05325 -0.9 -1.3 fimbrial protein compare
PS417_07165 -0.9 -1.6 dihydrodipicolinate synthase compare
PS417_10425 -0.9 -1.2 hypothetical protein compare
PS417_07575 -0.9 -2.8 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_23770 -0.9 -0.5 exodeoxyribonuclease V subunit alpha compare
PS417_02270 -0.9 -2.1 carbamoyltransferase compare
PS417_06730 -0.9 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_04270 -0.9 -4.0 ribonuclease G compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_06895 -0.8 -1.8 DNA-binding protein compare
PS417_09420 -0.8 -1.3 LysR family transcriptional regulator compare
PS417_07565 -0.8 -1.3 hypothetical protein compare
PS417_03045 -0.8 -1.4 hypothetical protein compare
PS417_02485 -0.8 -1.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_14255 -0.8 -2.5 phosphate import ATP-binding protein PstB compare
PS417_06395 -0.8 -2.0 amino acid transporter compare
PS417_08130 -0.8 -1.2 aspartate aminotransferase compare
PS417_16645 -0.8 -2.2 XRE family transcriptional regulator compare
PS417_02880 -0.8 -0.3 copper chaperone compare
PS417_26120 -0.8 -1.6 hypothetical protein compare
PS417_12290 -0.8 -3.8 sulfite reductase compare
PS417_22690 -0.8 -2.0 phosphogluconate dehydratase compare
PS417_04070 -0.8 -4.0 porin compare
PS417_05570 -0.8 -2.4 DeoR faimly transcriptional regulator compare
PS417_01290 -0.8 -1.3 ADP-ribose diphosphatase compare
PS417_16490 -0.8 -0.7 cell division protein FtsK compare
PS417_01340 -0.8 -3.4 agmatine deiminase compare
PS417_00485 -0.8 -1.6 ABC transporter permease compare
PS417_11060 -0.8 -2.0 transporter compare
PS417_04055 -0.8 -2.7 peptide transporter compare
PS417_02110 -0.8 -1.1 acyl carrier protein compare
PS417_28020 -0.8 -1.7 chorismate--pyruvate lyase compare
PS417_24290 -0.8 -2.1 hypothetical protein compare
PS417_02815 -0.8 -1.5 urea ABC transporter ATP-binding protein compare
PS417_18905 -0.8 -2.4 acyl-CoA dehydrogenase compare
PS417_05160 -0.8 -0.7 DNA polymerase III subunit chi compare
PS417_01570 -0.8 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_18250 -0.8 -1.8 chemotaxis protein compare
PS417_08620 -0.7 -0.4 hypothetical protein compare
PS417_13755 -0.7 -1.4 oxidoreductase compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms