Experiment set34S610 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_08540 -5.1 -1.2 RNA helicase compare
PS417_03045 -4.0 -1.3 hypothetical protein compare
PS417_23805 -3.8 -4.3 acetolactate synthase 3 regulatory subunit compare
PS417_23995 -3.4 -0.8 preprotein translocase subunit SecG compare
PS417_01575 -3.3 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_16005 -3.2 -1.9 ATPase compare
PS417_23800 -3.2 -12.1 ketol-acid reductoisomerase compare
PS417_02510 -3.1 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26890 -3.0 -6.2 dihydroxy-acid dehydratase compare
PS417_18595 -3.0 -2.8 3-isopropylmalate dehydratase compare
PS417_15975 -2.9 -1.6 glutamate carboxypeptidase compare
PS417_27040 -2.9 -2.6 3-phosphoglycerate dehydrogenase compare
PS417_23810 -2.9 -8.7 acetolactate synthase 3 catalytic subunit compare
PS417_01565 -2.9 -2.8 imidazole glycerol phosphate synthase compare
PS417_18600 -2.9 -2.4 isopropylmalate isomerase compare
PS417_01095 -2.8 -1.1 amino acid ABC transporter ATP-binding protein compare
PS417_01560 -2.8 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_02975 -2.8 -1.9 3-dehydroquinate dehydratase compare
PS417_18560 -2.8 -6.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_22795 -2.8 -1.3 exclusion suppressor FxsA compare
PS417_25720 -2.7 -5.6 anthranilate synthase component II compare
PS417_23545 -2.6 -1.2 gamma-glutamyl kinase compare
PS417_16990 -2.6 -4.8 acyl-CoA dehydrogenase compare
PS417_04420 -2.5 -7.5 histidinol dehydrogenase compare
PS417_13010 -2.5 -1.8 alpha/beta hydrolase compare
PS417_12855 -2.4 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_05160 -2.4 -0.8 DNA polymerase III subunit chi compare
PS417_12695 -2.4 -4.1 mannitol dehydrogenase compare
PS417_18585 -2.4 -5.0 3-isopropylmalate dehydrogenase compare
PS417_13885 -2.4 -2.7 chemotaxis protein CheY compare
PS417_26745 -2.4 -5.1 methionine biosynthesis protein MetW compare
PS417_23375 -2.3 -1.6 cytochrome C oxidase compare
PS417_06600 -2.3 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_12490 -2.2 -1.3 autotransporter adhesin compare
PS417_13990 -2.2 -2.2 LysR family transcriptional regulator compare
PS417_27195 -2.2 -0.7 N-acetylglutamate synthase compare
PS417_01855 -2.2 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_08220 -2.2 -0.7 epimerase compare
PS417_25725 -2.2 -8.7 anthranilate synthase component I compare
PS417_03310 -2.2 -5.3 carbonate dehydratase compare
PS417_27300 -2.1 -0.5 cell division protein ZapA compare
PS417_08410 -2.1 -1.3 hypothetical protein compare
PS417_26740 -2.1 -6.4 homoserine acetyltransferase compare
PS417_02720 -2.1 -0.7 TetR family transcriptional regulator compare
PS417_04865 -2.1 -2.8 molybdenum cofactor biosynthesis protein MoaC compare
PS417_23390 -1.9 -6.2 ubiquinol oxidase subunit II compare
PS417_12110 -1.9 -1.5 ATP-binding protein compare
PS417_13735 -1.9 -1.0 hypothetical protein compare
PS417_24310 -1.9 -2.6 ankyrin compare
PS417_24115 -1.9 -1.3 hypothetical protein compare
PS417_01580 -1.9 -0.8 imidazole glycerol phosphate synthase compare
PS417_10390 -1.9 -2.2 RNA polymerase subunit sigma24 compare
PS417_17565 -1.8 -2.3 branched-chain amino acid aminotransferase compare
PS417_14590 -1.8 -1.2 LysR family transcriptional regulator compare
PS417_09915 -1.8 -1.3 hypothetical protein compare
PS417_18530 -1.8 -3.5 O-succinylhomoserine sulfhydrylase compare
PS417_17240 -1.8 -1.8 trigger factor compare
PS417_25270 -1.7 -1.9 NrdR family transcriptional regulator compare
PS417_20855 -1.7 -0.5 hypothetical protein compare
PS417_21630 -1.7 -1.5 magnesium transporter compare
PS417_21655 -1.7 -0.5 aspartate kinase compare
PS417_05900 -1.7 -2.5 TetR family transcriptional regulator compare
PS417_04595 -1.7 -0.9 cell division protein MraZ compare
PS417_04415 -1.7 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_06375 -1.7 -0.4 deoxycytidine triphosphate deaminase compare
PS417_00550 -1.7 -0.7 hypothetical protein compare
PS417_13895 -1.6 -2.2 chemotaxis protein CheB compare
PS417_23110 -1.6 -5.3 2-isopropylmalate synthase compare
PS417_06045 -1.6 -1.7 membrane protein compare
PS417_08185 -1.6 -3.8 glycosyl transferase compare
PS417_00175 -1.6 -0.8 CigR compare
PS417_02890 -1.6 -3.0 cobalt-precorrin-6X reductase compare
PS417_04410 -1.5 -1.2 hypothetical protein compare
PS417_26660 -1.5 -2.9 protein PilI compare
PS417_19350 -1.5 -2.9 GTP cyclohydrolase compare
PS417_04365 -1.5 -0.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_15510 -1.5 -1.4 hypothetical protein compare
PS417_16475 -1.5 -2.0 camphor resistance protein CrcB compare
PS417_25650 -1.5 -1.4 anhydro-N-acetylmuramic acid kinase compare
PS417_00370 -1.5 -0.7 hypothetical protein compare
PS417_12190 -1.5 -2.3 microcin ABC transporter ATP-binding protein compare
PS417_02415 -1.5 -2.5 phosphoserine phosphatase compare
PS417_04585 -1.4 -0.5 hypothetical protein compare
PS417_20635 -1.4 -0.8 ABC transporter ATP-binding protein compare
PS417_23360 -1.4 -0.7 hypothetical protein compare
PS417_24125 -1.4 -2.9 hypothetical protein compare
PS417_17035 -1.4 -0.8 Cro/Cl family transcriptional regulator compare
PS417_26605 -1.4 -0.6 malonate decarboxylase subunit beta compare
PS417_04435 -1.4 -7.3 uracil phosphoribosyltransferase compare
PS417_19415 -1.4 -2.0 allantoinase compare
PS417_12195 -1.4 -4.0 ABC transporter permease compare
PS417_01570 -1.4 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_25715 -1.4 -2.7 anthranilate phosphoribosyltransferase compare
PS417_05595 -1.4 -5.5 ornithine carbamoyltransferase compare
PS417_24430 -1.4 -0.8 3-dehydroquinate dehydratase compare
PS417_20140 -1.4 -1.4 nucleoprotein/polynucleotide-associated enzyme compare
PS417_17070 -1.4 -1.4 RNA polymerase subunit sigma-24 compare
PS417_06895 -1.4 -2.0 DNA-binding protein compare
PS417_10925 -1.4 -5.3 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
PS417_23250 -1.4 -3.5 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_02270 -1.4 -2.0 carbamoyltransferase compare
PS417_20025 -1.4 -0.8 alpha-ribazole phosphatase compare
PS417_04340 -1.4 -3.3 ribosome hibernation promoting factor HPF compare
PS417_26230 -1.4 -2.2 electron transfer flavoprotein subunit alpha compare
PS417_07305 -1.4 -1.5 3-beta hydroxysteroid dehydrogenase compare
PS417_08245 -1.3 -0.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01710 -1.3 -2.7 histidine utilization repressor compare
PS417_06730 -1.3 -0.9 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_23950 -1.3 -0.7 polynucleotide phosphorylase/polyadenylase compare
PS417_15090 -1.3 -1.6 hypothetical protein compare
PS417_15770 -1.3 -0.7 pyridoxine 5'-phosphate oxidase compare
PS417_01850 -1.3 -1.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18390 -1.3 -3.4 LacI family transcriptional regulator compare
PS417_26725 -1.3 -2.5 hypothetical protein compare
PS417_11770 -1.3 -1.2 pyruvate dehydrogenase compare
PS417_24705 -1.3 -1.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_01030 -1.3 -0.9 glutamine ABC transporter substrate-binding protein compare
PS417_21575 -1.3 -4.0 chemotaxis protein compare
PS417_01290 -1.3 -1.0 ADP-ribose diphosphatase compare
PS417_24745 -1.3 -1.0 gamma-glutamyl phosphate reductase compare
PS417_22815 -1.3 -0.9 permease compare
PS417_19645 -1.3 -1.9 chemotaxis protein compare
PS417_01400 -1.3 -1.1 hypothetical protein compare
PS417_06945 -1.3 -0.8 membrane protein compare
PS417_23915 -1.3 -1.7 pantoate--beta-alanine ligase compare
PS417_21625 -1.3 -0.6 DNA-binding protein compare
PS417_26175 -1.3 -0.5 sarcosine oxidase subunit gamma compare
PS417_09440 -1.2 -1.3 MerR family transcriptional regulator compare
PS417_26540 -1.2 -5.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_26040 -1.2 -2.1 malate synthase compare
PS417_27435 -1.2 -3.7 polyphosphate kinase compare
PS417_20650 -1.2 -6.0 hypothetical protein compare
PS417_17440 -1.2 -1.2 beta-lactamase compare
PS417_28325 -1.2 -1.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_02005 -1.2 -5.5 glutamate synthase compare
PS417_12310 -1.2 -4.9 methionine synthase compare
PS417_17610 -1.2 -0.9 AsnC family transcriptional regulator compare
PS417_16885 -1.2 -1.7 hypothetical protein compare
PS417_24710 -1.2 -2.8 lipoprotein compare
PS417_15480 -1.2 -1.0 ABC transporter substrate-binding protein compare
PS417_00355 -1.2 -1.4 metal ABC transporter permease compare
PS417_08740 -1.2 -1.2 ribose-phosphate pyrophosphokinase compare
PS417_00755 -1.2 -0.4 biofilm PGA synthesis protein PgaD compare
PS417_16490 -1.2 -0.5 cell division protein FtsK compare
PS417_00995 -1.2 -0.9 alpha/beta hydrolase compare
PS417_05650 -1.2 -1.7 leucyl-tRNA synthetase compare
PS417_11070 -1.2 -1.8 rhizopine-binding protein compare
PS417_26985 -1.2 -2.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_06245 -1.2 -0.8 zinc metallopeptidase RseP compare
PS417_03515 -1.2 -1.0 type III secretion protein compare
PS417_08675 -1.2 -4.1 molybdenum cofactor biosynthesis protein MoaA compare
PS417_11350 -1.2 -2.8 biopolymer transporter ExbB compare
PS417_05365 -1.2 -1.1 FAD-binding protein compare
PS417_01620 -1.2 -1.1 preprotein translocase subunit SecB compare
PS417_25985 -1.2 -0.9 dethiobiotin synthetase compare
PS417_02370 -1.1 -1.0 ADP-ribose pyrophosphatase compare
PS417_22990 -1.1 -0.8 iron dicitrate transport regulator FecR compare
PS417_02560 -1.1 -1.0 23S rRNA methyltransferase compare
PS417_24085 -1.1 -1.4 protein RnfH compare
PS417_23845 -1.1 -2.5 hemin ABC transporter ATP-binding protein compare
PS417_00030 -1.1 -2.2 hypothetical protein compare
PS417_24525 -1.1 -1.1 nuclease compare
PS417_08195 -1.1 -5.9 hypothetical protein compare
PS417_28510 -1.1 -3.8 chromosome partitioning protein compare
PS417_28080 -1.1 -7.3 phosphate ABC transporter permease compare
PS417_20660 -1.1 -4.8 hypothetical protein compare
PS417_21870 -1.1 -1.5 glycerophosphodiester phosphodiesterase compare
PS417_08170 -1.1 -3.8 capsular biosynthesis protein compare
PS417_10040 -1.1 -0.7 MFS transporter compare
PS417_08125 -1.1 -0.2 prephenate dehydratase compare
PS417_23910 -1.1 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_14805 -1.1 -0.9 AraC family transcriptional regulator compare
PS417_23900 -1.1 -4.3 poly(A) polymerase compare
PS417_24835 -1.1 -3.6 hypothetical protein compare
PS417_07865 -1.1 -0.9 hypothetical protein compare
PS417_01715 -1.1 -0.6 hypothetical protein compare
PS417_15885 -1.1 -1.1 GCN5 family acetyltransferase compare
PS417_13640 -1.1 -1.4 ribose ABC transporter permease compare
PS417_08205 -1.1 -2.3 acetyltransferase compare
PS417_03475 -1.1 -1.7 type III secretion protein compare
PS417_13490 -1.1 -0.8 hypothetical protein compare
PS417_14065 -1.1 -4.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_03785 -1.1 -1.1 pilus assembly protein PilV compare
PS417_00825 -1.1 -1.5 recombinase RecF compare
PS417_03260 -1.1 -0.3 5S ribosomal RNA compare
PS417_10520 -1.1 -2.5 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_08190 -1.1 -6.3 membrane protein compare
PS417_14280 -1.1 -1.8 hypothetical protein compare
PS417_22565 -1.1 -0.2 formyltetrahydrofolate deformylase compare
PS417_02070 -1.0 -0.5 membrane protein compare
PS417_06675 -1.0 -1.5 ATP-dependent helicase compare
PS417_01920 -1.0 -0.3 ATP-dependent protease subunit HslV compare
PS417_03685 -1.0 -1.5 FAD-dependent oxidoreductase compare
PS417_06100 -1.0 -0.8 SAM-dependent methyltransferase compare
PS417_26370 -1.0 -1.9 RNA helicase compare
PS417_18780 -1.0 -0.7 flavin reductase compare
PS417_12595 -1.0 -0.8 transcriptional regulator compare
PS417_23105 -1.0 -0.8 hypothetical protein compare
PS417_08230 -1.0 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_12535 -1.0 -1.0 nitrilase compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms