Experiment set34S610 for Pseudomonas simiae WCS417

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

Group: in planta
Media: + Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Culturing: fluoroDangl_ML3b, pot, at 24 (C), (Solid)
By: Marta Torres on 16-Jun-24

Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms

SEED Subsystems

Subsystem	#Specific
Inositol catabolism	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Inositol phosphate metabolism
• Propanoate metabolism
• Alanine and aspartate metabolism
• Valine, leucine and isoleucine degradation
• beta-Alanine metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
β-alanine degradation II	2	2	1
β-alanine degradation I	2	1	1
acrylate degradation I	5	3	1
propanoyl-CoA degradation II	5	3	1
myo-inositol degradation I	7	7	1
2,4-dinitrotoluene degradation	7	3	1
L-valine degradation I	8	6	1
myo-, chiro- and scyllo-inositol degradation	10	7	1