Experiment set34S609 for Pseudomonas simiae WCS417

200 most important genes:

gene	name	fitness	t score	description
PS417_00755		-3.1	-0.9	biofilm PGA synthesis protein PgaD
PS417_02415		-2.9	-4.0	phosphoserine phosphatase
PS417_26985		-2.8	-4.2	phosphoenolpyruvate-protein phosphotransferase
PS417_18600		-2.6	-2.9	isopropylmalate isomerase
PS417_21480		-2.6	-1.3	23S rRNA pseudouridylate synthase
PS417_18595		-2.6	-2.9	3-isopropylmalate dehydratase
PS417_17070		-2.5	-2.2	RNA polymerase subunit sigma-24
PS417_25650		-2.4	-1.6	anhydro-N-acetylmuramic acid kinase
PS417_23800		-2.3	-6.9	ketol-acid reductoisomerase
PS417_23810		-2.3	-8.4	acetolactate synthase 3 catalytic subunit
PS417_02975		-2.3	-2.9	3-dehydroquinate dehydratase
PS417_23805		-2.2	-3.4	acetolactate synthase 3 regulatory subunit
PS417_03310		-2.2	-5.6	carbonate dehydratase
PS417_13510		-2.2	-1.1	polyketide cyclase
PS417_27040		-2.2	-2.7	3-phosphoglycerate dehydrogenase
PS417_23375		-2.2	-2.0	cytochrome C oxidase
PS417_18585		-2.2	-4.3	3-isopropylmalate dehydrogenase
PS417_07170		-2.2	-2.1	hypothetical protein
PS417_11925		-2.1	-2.3	hypothetical protein
PS417_27195		-2.1	-0.9	N-acetylglutamate synthase
PS417_19425		-2.1	-0.9	allantoicase
PS417_21630		-2.0	-1.4	magnesium transporter
PS417_08685		-2.0	-1.4	flagellar hook-length control protein FliK
PS417_18530		-2.0	-4.1	O-succinylhomoserine sulfhydrylase
PS417_19285		-2.0	-1.1	ankyrin
PS417_15135		-1.8	-1.2	hypothetical protein
PS417_08230		-1.8	-2.1	lipopolysaccharide biosynthesis protein RfbH
PS417_26695		-1.8	-0.7	uracil phosphoribosyltransferase
PS417_00370		-1.8	-1.0	hypothetical protein
PS417_25790		-1.8	-2.6	aminoglycoside phosphotransferase
PS417_07165		-1.8	-5.5	dihydrodipicolinate synthase
PS417_16005		-1.8	-1.8	ATPase
PS417_01580		-1.8	-0.9	imidazole glycerol phosphate synthase
PS417_28220		-1.7	-1.8	LysR family transcriptional regulator
PS417_23915		-1.7	-2.6	pantoate--beta-alanine ligase
PS417_02560		-1.7	-1.4	23S rRNA methyltransferase
PS417_23370		-1.7	-3.7	protoheme IX farnesyltransferase
PS417_26890		-1.7	-4.3	dihydroxy-acid dehydratase
PS417_20855		-1.6	-0.7	hypothetical protein
PS417_15885		-1.6	-1.4	GCN5 family acetyltransferase
PS417_21425		-1.6	-1.5	4-amino-4-deoxychorismate lyase
PS417_04595		-1.6	-1.1	cell division protein MraZ
PS417_23545		-1.6	-1.2	gamma-glutamyl kinase
PS417_23150		-1.6	-1.4	Cro/Cl family transcriptional regulator
PS417_06375		-1.5	-0.4	deoxycytidine triphosphate deaminase
PS417_21655		-1.5	-0.6	aspartate kinase
PS417_20880		-1.5	-2.0	GntR family transcriptional regulator
PS417_05500		-1.5	-2.0	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
PS417_08580		-1.5	-4.4	histidine kinase
PS417_17945		-1.5	-0.6	hypothetical protein
PS417_14065		-1.5	-7.2	UTP--glucose-1-phosphate uridylyltransferase
PS417_01620		-1.5	-1.7	preprotein translocase subunit SecB
PS417_20775		-1.4	-1.6	coproporphyrinogen III oxidase
PS417_01575		-1.4	-2.7	1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data)
PS417_16195		-1.4	-0.8	AraC family transcriptional regulator
PS417_26745		-1.4	-4.4	methionine biosynthesis protein MetW
PS417_04170		-1.4	-3.6	stringent starvation protein A
PS417_26815		-1.4	-1.6	peptidase M16
PS417_07470		-1.4	-0.7	hypothetical protein
PS417_17705		-1.4	-2.5	LacI family transcriptional regulator
PS417_23900		-1.4	-5.8	poly(A) polymerase
PS417_25895		-1.4	-1.5	glyoxalase
PS417_07140		-1.4	-1.3	peptidase M48
PS417_01145		-1.4	-0.8	taurine transporter ATP-binding subunit
PS417_16475		-1.4	-2.5	camphor resistance protein CrcB
PS417_06895		-1.3	-2.3	DNA-binding protein
PS417_22575		-1.3	-5.9	exonuclease I
PS417_05365		-1.3	-1.6	FAD-binding protein
PS417_26740		-1.3	-4.3	homoserine acetyltransferase
PS417_27870		-1.3	-1.5	ATP-dependent DNA helicase RecG
PS417_24800		-1.3	-2.4	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
PS417_08365		-1.3	-0.7	hypothetical protein
PS417_25715		-1.3	-3.1	anthranilate phosphoribosyltransferase
PS417_25720		-1.3	-5.5	anthranilate synthase component II
PS417_22570		-1.3	-0.4	H-NS histone
PS417_23110		-1.3	-4.1	2-isopropylmalate synthase
PS417_20650		-1.3	-7.0	hypothetical protein
PS417_02005		-1.3	-6.0	glutamate synthase
PS417_01560		-1.2	-1.7	imidazoleglycerol-phosphate dehydratase
PS417_28190		-1.2	-2.7	amino acid ABC transporter substrate-binding protein
PS417_08205		-1.2	-2.6	acetyltransferase
PS417_24710		-1.2	-3.8	lipoprotein
PS417_19955		-1.2	-1.2	hypothetical protein
PS417_28080		-1.2	-7.6	phosphate ABC transporter permease
PS417_16990		-1.2	-4.1	acyl-CoA dehydrogenase
PS417_02510		-1.2	-3.3	ATP phosphoribosyltransferase regulatory subunit
PS417_20940		-1.2	-3.6	invasion protein IagB
PS417_18560		-1.2	-3.7	N-(5'-phosphoribosyl)anthranilate isomerase
PS417_24895		-1.2	-1.0	hypothetical protein
PS417_02915		-1.2	-2.6	precorrin-3B C17-methyltransferase
PS417_26715		-1.2	-3.8	peptidase P60
PS417_00295		-1.2	-5.0	hypothetical protein
PS417_05695		-1.2	-3.0	transcriptional regulator
PS417_15215		-1.2	-1.3	protein activator of alkane oxidation PraA
PS417_02895		-1.2	-0.8	precorrin-6Y C5,15-methyltransferase
PS417_09335		-1.2	-1.3	HAD family hydrolase
PS417_19620		-1.1	-1.0	hypothetical protein
PS417_24785		-1.1	-1.5	nucleoside-diphosphate sugar epimerase
PS417_01735		-1.1	-2.0	ABC transporter permease
PS417_06730		-1.1	-1.0	3-carboxy-cis,cis-muconate cycloisomerase
PS417_04435		-1.1	-5.8	uracil phosphoribosyltransferase
PS417_04055		-1.1	-2.7	peptide transporter
PS417_17680		-1.1	-2.4	ABC transporter
PS417_23385		-1.1	-4.6	cytochrome o ubiquinol oxidase subunit I
PS417_09420		-1.1	-1.2	LysR family transcriptional regulator
PS417_22630		-1.1	-1.7	hypothetical protein
PS417_16555		-1.1	-0.9	cupin
PS417_22780		-1.1	-2.7	XRE family transcriptional regulator
PS417_08200		-1.1	-2.0	hypothetical protein
PS417_21870		-1.1	-2.1	glycerophosphodiester phosphodiesterase
PS417_00075		-1.1	-2.2	hypothetical protein
PS417_06540		-1.1	-1.0	membrane protein
PS417_22840		-1.1	-0.8	tRNA-Met
PS417_11585		-1.1	-1.4	LuxR family transcriptional regulator
PS417_17240		-1.1	-1.4	trigger factor
PS417_04070		-1.1	-3.9	porin
PS417_08195		-1.1	-5.4	hypothetical protein
PS417_08225		-1.1	-3.9	acetolactate synthase
PS417_04420		-1.1	-4.4	histidinol dehydrogenase
PS417_21180		-1.1	-2.2	short-chain dehydrogenase
PS417_24575		-1.1	-0.9	hypothetical protein
PS417_05120		-1.1	-1.6	RNA polymerase subunit sigma-24
PS417_27305		-1.0	-4.7	5-formyltetrahydrofolate cyclo-ligase
PS417_27940		-1.0	-1.0	type VI secretion protein
PS417_13305		-1.0	-0.9	hypothetical protein
PS417_21125		-1.0	-5.5	phosphoadenosine phosphosulfate reductase
PS417_05840		-1.0	-1.9	LuxR family transcriptional regulator
PS417_08190		-1.0	-7.2	membrane protein
PS417_19650		-1.0	-3.4	chemotaxis protein CheW
PS417_25725		-1.0	-6.3	anthranilate synthase component I
PS417_25390		-1.0	-1.6	MFS transporter
PS417_27490		-1.0	-1.3	hypothetical protein
PS417_16790		-1.0	-2.0	ABC transporter permease
PS417_19305		-1.0	-2.4	acireductone dioxygenase
PS417_08125		-1.0	-0.3	prephenate dehydratase
PS417_01850		-1.0	-1.7	phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data)
PS417_22565		-1.0	-0.3	formyltetrahydrofolate deformylase
PS417_17160		-1.0	-1.4	1-aminocyclopropane-1-carboxylate deaminase
PS417_27585		-1.0	-1.0	diaminopimelate epimerase
PS417_03045		-1.0	-1.2	hypothetical protein
PS417_23390		-1.0	-4.3	ubiquinol oxidase subunit II
PS417_26370		-1.0	-2.0	RNA helicase
PS417_19675		-1.0	-2.5	chemotaxis protein CheY
PS417_16935		-1.0	-2.8	diguanylate phosphodiesterase
PS417_12840		-1.0	-2.0	TetR family transcriptional regulator
PS417_15030		-1.0	-0.8	short-chain dehydrogenase
PS417_23380		-1.0	-1.4	cytochrome o ubiquinol oxidase subunit III
PS417_12005		-1.0	-2.0	hypothetical protein
PS417_22195		-1.0	-2.9	peptidase
PS417_11830		-1.0	-1.5	membrane protein
PS417_11375		-1.0	-2.0	hypothetical protein
PS417_20665		-0.9	-3.5	hypothetical protein
PS417_01920		-0.9	-0.4	ATP-dependent protease subunit HslV
PS417_11865		-0.9	-2.1	xylose isomerase
PS417_16310		-0.9	-2.2	membrane protein
PS417_22495		-0.9	-2.1	histidine triad (HIT) protein
PS417_10225		-0.9	-2.9	chitinase
PS417_20670		-0.9	-3.3	glycosyl transferase family 2
PS417_24500		-0.9	-1.5	DEAD/DEAH box helicase
PS417_25290		-0.9	-1.7	hypothetical protein
PS417_15705		-0.9	-1.0	nitrate reductase
PS417_26840		-0.9	-3.3	TetR family transcriptional regulator
PS417_23995		-0.9	-0.5	preprotein translocase subunit SecG
PS417_06645		-0.9	-4.9	RNA polymerase-associated protein RapA
PS417_03260		-0.9	-0.4	5S ribosomal RNA
PS417_20080		-0.9	-2.1	peptidase P60
PS417_00975		-0.9	-0.8	hypothetical protein
PS417_10575		-0.9	-1.2	DNA alkylation repair protein
PS417_27005		-0.9	-0.7	membrane protein
PS417_06530		-0.9	-1.0	membrane protein
PS417_08090		-0.9	-0.3	3-oxoacyl-ACP reductase
PS417_23910		-0.9	-2.9	3-methyl-2-oxobutanoate hydroxymethyltransferase
PS417_17565		-0.9	-1.3	branched-chain amino acid aminotransferase
PS417_13050		-0.9	-1.5	N-acetylglucosamine-6-sulfatase
PS417_14850		-0.9	-1.6	hypothetical protein
PS417_25270		-0.9	-1.5	NrdR family transcriptional regulator
PS417_10920		-0.9	-1.3	LysR family transcriptional regulator
PS417_24355		-0.9	-1.7	MFS transporter
PS417_05105		-0.9	-2.0	membrane protein
PS417_20170		-0.9	-1.6	hypothetical protein
PS417_25645		-0.9	-2.5	peptidase M23
PS417_27975		-0.9	-2.4	type VI secretion protein
PS417_10025		-0.9	-1.0	bacteriophage lambda NinG family protein
PS417_26115		-0.9	-3.2	glutamine ABC transporter ATP-binding protein
PS417_28230		-0.9	-1.3	transcriptional regulator
PS417_01160		-0.9	-2.7	hypothetical protein
PS417_27535		-0.9	-3.6	chemotaxis protein CheY
PS417_22815		-0.9	-1.0	permease
PS417_17350		-0.9	-1.5	copper resistance protein CopD
PS417_07010		-0.8	-1.7	pseudouridine synthase
PS417_25985		-0.8	-0.9	dethiobiotin synthetase
PS417_24835		-0.8	-3.0	hypothetical protein
PS417_04865		-0.8	-1.6	molybdenum cofactor biosynthesis protein MoaC
PS417_02225		-0.8	-0.8	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
PS417_18390		-0.8	-3.5	LacI family transcriptional regulator
PS417_19195		-0.8	-1.2	hypothetical protein
PS417_04075		-0.8	-3.4	peptide ABC transporter substrate-binding protein
PS417_11180		-0.8	-1.6	TetR family transcriptional regulator
PS417_26605		-0.8	-0.6	malonate decarboxylase subunit beta
PS417_25915		-0.8	-1.6	carbon-nitrogen hydrolase

Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms