Experiment set34S609 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
PS417_10480 +3.6 1.6 glutathione S-transferase compare
PS417_09670 +3.4 16.7 AraC family transcriptional regulator compare
PS417_11950 +3.2 7.3 hypothetical protein compare
PS417_24225 +3.1 1.2 hypothetical protein compare
PS417_27610 +3.0 3.8 hypothetical protein compare
PS417_17215 +2.7 3.5 peptidylprolyl isomerase compare
PS417_11900 +2.4 4.4 conjugal transfer protein TraR compare
PS417_20105 +2.4 9.9 glycosyl transferase compare
PS417_06245 +2.2 1.7 zinc metallopeptidase RseP compare
PS417_16370 +2.2 8.5 chemotaxis protein CheY compare
PS417_11080 +2.2 7.5 dehydrogenase compare
PS417_00945 +2.0 1.5 sulfate ABC transporter ATP-binding protein compare
PS417_10675 +1.9 1.8 TetR family transcriptional regulator compare
PS417_27605 +1.9 7.2 hypothetical protein compare
PS417_23950 +1.9 2.0 polynucleotide phosphorylase/polyadenylase compare
PS417_21680 +1.9 1.5 succinylglutamate desuccinylase compare
PS417_23580 +1.8 2.3 peptidylprolyl isomerase compare
PS417_15290 +1.8 1.5 type VI secretion protein compare
PS417_11415 +1.8 1.5 hypothetical protein compare
PS417_09640 +1.8 2.6 capsular biosynthesis protein compare
PS417_28265 +1.7 2.1 pyridoxamine kinase compare
PS417_10330 +1.6 1.9 histidine kinase compare
PS417_19825 +1.6 11.2 ATPase AAA compare
PS417_22315 +1.6 1.1 DNA-3-methyladenine glycosylase compare
PS417_06365 +1.6 8.8 RNA polymerase sigma factor compare
PS417_14395 +1.5 4.0 fe2+ zn2+ uptake regulation protein compare
PS417_22705 +1.5 2.6 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_17000 +1.5 1.7 MerR family transcriptional regulator compare
PS417_05990 +1.5 2.4 diguanylate cyclase compare
PS417_00650 +1.5 1.4 LysR family transcriptional regulator compare
PS417_24775 +1.5 2.1 dehydratase compare
PS417_10100 +1.5 2.3 hypothetical protein compare
PS417_01605 +1.4 1.1 phosphoglycerate mutase compare
PS417_04375 +1.4 1.6 ABC transporter ATP-binding protein compare
PS417_15725 +1.4 1.2 nitrate/nitrite transporter NarK compare
PS417_22375 +1.4 1.2 cold-shock protein compare
PS417_22595 +1.4 1.5 hypothetical protein compare
PS417_05025 +1.4 1.0 maleylacetoacetate isomerase compare
PS417_04965 +1.4 3.6 hypothetical protein compare
PS417_14815 +1.3 4.1 diguanylate cyclase compare
PS417_05905 +1.3 1.2 hypothetical protein compare
PS417_09605 +1.3 2.6 glycosyl transferase compare
PS417_03905 +1.3 1.5 fimbrial protein compare
PS417_16870 +1.3 1.7 short-chain dehydrogenase compare
PS417_12565 +1.3 1.4 2-dehydro-3-deoxygluconokinase compare
PS417_27075 +1.3 1.4 thiol-disulfide isomerase compare
PS417_05710 +1.3 2.1 hypothetical protein compare
PS417_19560 +1.3 4.7 amino acid ABC transporter substrate-binding protein compare
PS417_07820 +1.3 2.4 transposase compare
PS417_18545 +1.3 1.2 cell division protein compare
PS417_20985 +1.3 0.7 porin compare
PS417_07465 +1.3 1.3 LysR family transcriptional regulator compare
PS417_20095 +1.3 5.7 hypothetical protein compare
PS417_14260 +1.3 2.9 phosphate ABC transporter permease compare
PS417_19975 +1.3 2.6 hypothetical protein compare
PS417_21475 +1.2 2.5 HAD family hydrolase compare
PS417_07440 +1.2 1.6 cyclic nucleotide-binding protein compare
PS417_05535 +1.2 1.3 Fis family transcriptional regulator compare
PS417_15995 +1.2 2.4 peptidase compare
PS417_08625 +1.2 1.9 membrane protein compare
PS417_27800 +1.2 0.8 exodeoxyribonuclease III compare
PS417_00570 +1.2 1.0 NADP transhydrogenase subunit alpha compare
PS417_09720 +1.2 3.4 methyltransferase compare
PS417_26535 +1.2 1.1 cytochrome B561 compare
PS417_13175 +1.2 1.6 iron transporter compare
PS417_02710 +1.2 1.8 Urease maturation and nickel insertion protein UreE (from data) compare
PS417_10720 +1.2 2.5 chemotaxis protein CheY compare
PS417_17105 +1.2 6.7 spore coat protein compare
PS417_07510 +1.2 1.3 aspartyl beta-hydroxylase compare
PS417_01440 +1.1 3.0 hypothetical protein compare
PS417_26645 +1.1 2.6 chemotaxis protein compare
PS417_07770 +1.1 2.4 hypothetical protein compare
PS417_17305 +1.1 1.6 hypothetical protein compare
PS417_05975 +1.1 0.9 chemotaxis protein CheW compare
PS417_18310 +1.1 0.5 hypothetical protein compare
PS417_04320 +1.1 1.2 divalent cation transporter compare
PS417_27520 +1.1 2.2 uroporphyrin-III methyltransferase compare
PS417_17430 +1.1 1.9 aldehyde dehydrogenase compare
PS417_13490 +1.1 0.8 hypothetical protein compare
PS417_15855 +1.1 1.8 universal stress protein compare
PS417_14590 +1.1 1.9 LysR family transcriptional regulator compare
PS417_01435 +1.1 1.4 hypothetical protein compare
PS417_21935 +1.1 1.6 transcriptional regulator compare
PS417_17860 +1.1 2.9 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_27810 +1.1 5.1 ribonuclease PH compare
PS417_22580 +1.1 2.4 membrane protein compare
PS417_10015 +1.1 1.1 hypothetical protein compare
PS417_25340 +1.1 1.9 membrane protein compare
PS417_23540 +1.0 1.4 CreA compare
PS417_13735 +1.0 1.5 hypothetical protein compare
PS417_20715 +1.0 0.6 cytochrome Cbb3 compare
PS417_04975 +1.0 2.1 response regulator receiver protein compare
PS417_22610 +1.0 3.0 pilus assembly protein PilZ compare
PS417_07700 +1.0 1.4 chromosome partitioning protein ParA compare
PS417_09955 +1.0 2.0 hypothetical protein compare
PS417_27225 +1.0 1.0 protease compare
PS417_09245 +1.0 1.3 recombinase RdgC compare
PS417_20875 +1.0 1.6 chromosome segregation protein SMC compare
PS417_04835 +1.0 2.2 hemolysin D compare
PS417_01035 +1.0 4.2 ATP-binding protein compare
PS417_15510 +1.0 0.9 hypothetical protein compare
PS417_08545 +1.0 1.1 aromatic ring-opening dioxygenase LigB compare
PS417_09215 +1.0 2.6 MFS transporter compare
PS417_24155 +1.0 0.6 ATP-binding protein compare
PS417_07360 +1.0 1.0 ArtI protein compare
PS417_04895 +1.0 1.3 carboxylesterase compare
PS417_13495 +1.0 4.5 nuclease compare
PS417_00630 +1.0 2.7 nitrate ABC transporter substrate-binding protein compare
PS417_27205 +0.9 2.5 adenylate cyclase compare
PS417_16160 +0.9 1.7 ABC transporter substrate-binding protein compare
PS417_26560 +0.9 2.8 amino acid dehydrogenase compare
PS417_20705 +0.9 1.0 cbb3-type cytochrome c oxidase subunit II compare
PS417_12615 +0.9 2.4 hypothetical protein compare
PS417_07710 +0.9 1.0 membrane protein compare
PS417_21495 +0.9 1.0 lipoprotein compare
PS417_02060 +0.9 1.2 FAD-dependent oxidoreductase compare
PS417_06445 +0.9 1.8 iron-siderophore ABC transporter permease compare
PS417_14045 +0.9 1.1 alkyl hydroperoxide reductase compare
PS417_05985 +0.9 2.7 chemotaxis protein CheY compare
PS417_12015 +0.9 2.4 phosphoglycerate mutase compare
PS417_10635 +0.9 1.6 peptidylprolyl isomerase compare
PS417_26250 +0.9 1.2 peptidase M19 compare
PS417_25315 +0.9 1.9 membrane protein compare
PS417_02695 +0.9 1.2 protein hupE compare
PS417_18055 +0.9 0.8 general secretion pathway protein GspK compare
PS417_10335 +0.9 1.1 peroxiredoxin compare
PS417_19730 +0.9 3.3 flagellar biosynthesis protein FliR compare
PS417_00180 +0.9 1.1 tryptophan synthase subunit alpha compare
PS417_12270 +0.9 1.8 pyruvate dehydrogenase compare
PS417_27875 +0.9 2.7 histidine kinase compare
PS417_04385 +0.9 0.8 organic solvent ABC transporter substrate-binding protein compare
PS417_02110 +0.9 1.4 acyl carrier protein compare
PS417_17100 +0.9 2.6 spore coat protein compare
PS417_05970 +0.9 3.5 chemotaxis protein CheR compare
PS417_26530 +0.9 1.0 hypothetical protein compare
PS417_24295 +0.9 1.9 carbon starvation protein A compare
PS417_19335 +0.9 2.1 isochorismatase compare
PS417_01215 +0.9 1.7 membrane protein compare
PS417_00645 +0.8 2.0 hypothetical protein compare
PS417_21285 +0.8 1.8 hypothetical protein compare
PS417_10300 +0.8 1.7 protease compare
PS417_15735 +0.8 3.0 histidine kinase compare
PS417_05980 +0.8 3.5 chemotaxis protein CheA compare
PS417_28145 +0.8 1.9 AraC family transcriptional regulator compare
PS417_00510 +0.8 0.5 membrane protein compare
PS417_24655 +0.8 3.0 hypothetical protein compare
PS417_01545 +0.8 3.2 adenine glycosylase compare
PS417_20055 +0.8 1.7 cob(II)yrinic acid a,c-diamide reductase compare
PS417_08585 +0.8 2.4 ATPase AAA compare
PS417_03495 +0.8 1.8 type III secretory protein EscS compare
PS417_19590 +0.8 2.2 enoyl-CoA hydratase compare
PS417_02820 +0.8 1.2 urea ABC transporter ATP-binding protein compare
PS417_10565 +0.8 1.5 LysR family transcriptional regulator compare
PS417_02075 +0.8 1.8 thioesterase compare
PS417_08060 +0.8 2.4 proline iminopeptidase compare
PS417_24360 +0.8 1.9 aldehyde oxidase compare
PS417_04180 +0.8 2.0 GntR family transcriptional regulator compare
PS417_20480 +0.8 2.4 hypothetical protein compare
PS417_03895 +0.8 2.0 methyltransferase compare
PS417_28405 +0.8 2.6 hypothetical protein compare
PS417_11890 +0.8 1.9 Inositol transport system ATP-binding protein (from data) compare
PS417_27675 +0.8 1.3 xanthine phosphoribosyltransferase compare
PS417_08590 +0.8 1.2 hypothetical protein compare
PS417_25310 +0.8 2.0 hypothetical protein compare
PS417_20725 +0.8 0.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_03100 +0.8 0.8 pilus assembly protein compare
PS417_06385 +0.8 2.1 DEAD/DEAH box helicase compare
PS417_00750 +0.8 2.7 N-glycosyltransferase compare
PS417_11850 +0.8 2.9 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
PS417_06490 +0.8 1.6 hypothetical protein compare
PS417_24925 +0.8 3.0 hypothetical protein compare
PS417_12955 +0.8 1.1 sulfonate ABC transporter substrate-binding protein compare
PS417_01510 +0.8 1.0 hypothetical protein compare
PS417_11300 +0.8 3.0 general secretion pathway protein GspE compare
PS417_20340 +0.8 1.4 hypothetical protein compare
PS417_21830 +0.8 1.4 TetR family transcriptional regulator compare
PS417_05960 +0.7 3.0 chemotaxis protein compare
PS417_26150 +0.7 1.3 acyltransferase compare
PS417_02770 +0.7 1.7 membrane protein compare
PS417_19935 +0.7 1.1 hypothetical protein compare
PS417_18020 +0.7 1.3 hypothetical protein compare
PS417_16060 +0.7 2.2 protein tolQ compare
PS417_04715 +0.7 1.8 Fe-S oxidoreductase compare
PS417_13440 +0.7 1.8 amino acid permease compare
PS417_22175 +0.7 1.0 amino acid transporter LysE compare
PS417_01905 +0.7 3.4 poly(R)-hydroxyalkanoic acid synthase compare
PS417_18490 +0.7 1.2 hypothetical protein compare
PS417_20090 +0.7 2.7 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_23155 +0.7 2.9 pilus assembly protein PilW compare
PS417_27795 +0.7 0.2 orotate phosphoribosyltransferase compare
PS417_11725 +0.7 1.4 peptidase M19 compare
PS417_00635 +0.7 1.2 sulfonate ABC transporter ATP-binding protein compare
PS417_07400 +0.7 1.2 hypothetical protein compare
PS417_04710 +0.7 1.5 amino acid ABC transporter substrate-binding protein compare
PS417_01915 +0.7 0.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_26525 +0.7 2.7 DEAD/DEAH box helicase compare
PS417_01430 +0.7 1.5 chromosome segregation protein SMC compare
PS417_17615 +0.7 1.1 leucyl-tRNA synthetase compare
PS417_07325 +0.7 1.9 AraC family transcriptional regulator compare
PS417_24275 +0.7 4.5 diguanylate phosphodiesterase compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms