| | gene | name | fitness | t score | description | |
|---|
| b2620 | smpB | -4.1 | -2.8 | SsrA-binding protein (NCBI) | compare |
| b0683 | fur | -3.7 | -3.7 | ferric uptake regulator (NCBI) | compare |
| b0142 | folK | -3.6 | -1.3 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b3863 | polA | -3.4 | -2.3 | DNA polymerase I (NCBI) | compare |
| b4172 | hfq | -2.7 | -1.9 | RNA-binding protein Hfq (NCBI) | compare |
| b1865 | nudB | -2.5 | -2.9 | dATP pyrophosphohydrolase (NCBI) | compare |
| b4202 | rpsR | -2.5 | -3.2 | 30S ribosomal protein S18 (NCBI) | compare |
| b2699 | recA | -2.4 | -2.2 | recombinase A (NCBI) | compare |
| b3341 | rpsG | -2.4 | -2.1 | 30S ribosomal protein S7 (NCBI) | compare |
| b2935 | tktA | -2.3 | -3.8 | transketolase 1, thiamin-binding (NCBI) | compare |
| b2820 | recB | -2.3 | -2.2 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b2330 | yfcB | -2.3 | -3.3 | putative adenine-specific methylase (VIMSS) | compare |
| b1607 | ydgC | -1.9 | -2.5 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b3706 | trmE | -1.8 | -7.0 | tRNA modification GTPase (NCBI) | compare |
| b0730 | mngR | -1.8 | -2.7 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b3164 | pnp | -1.7 | -3.1 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b0990 | cspG | -1.7 | -1.2 | DNA-binding transcriptional regulator (NCBI) | compare |
| b3741 | gidA | -1.7 | -7.6 | glucose-inhibited division protein A (NCBI) | compare |
| b3979 | thrT | -1.7 | -0.6 | tRNA-Thr (NCBI) | compare |
| b1951 | rcsA | -1.7 | -1.1 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b1863 | ruvC | -1.6 | -3.1 | Holliday junction resolvase (NCBI) | compare |
| b1129 | phoQ | -1.5 | -1.1 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b4402 | yjjY | -1.5 | -1.8 | hypothetical protein (NCBI) | compare |
| b2822 | recC | -1.4 | -6.5 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b4375 | prfC | -1.4 | -5.3 | peptide chain release factor 3 (NCBI) | compare |
| b0232 | yafN | -1.3 | -0.7 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b2830 | nudH | -1.3 | -1.9 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b0114 | aceE | -1.3 | -0.9 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b4647 | mokA | -1.3 | -1.3 | no description | compare |
| b1536 | ydeI | -1.3 | -1.2 | hypothetical protein (NCBI) | compare |
| b1257 | yciE | -1.3 | -0.8 | hypothetical protein (NCBI) | compare |
| b2912 | ygfA | -1.3 | -2.5 | putative ligase (VIMSS) | compare |
| b1861 | ruvA | -1.2 | -1.4 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b2426 | ucpA | -1.2 | -1.4 | putative oxidoreductase (VIMSS) | compare |
| b1293 | sapB | -1.2 | -1.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0630 | lipB | -1.1 | -1.6 | protein of lipoate biosynthesis (VIMSS) | compare |
| b0782 | moaB | -1.1 | -1.9 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b2431 | b2431 | -1.1 | -6.0 | orf, hypothetical protein (VIMSS) | compare |
| b2567 | rnc | -1.1 | -1.2 | ribonuclease III (NCBI) | compare |
| b4155 | yjeA | -1.1 | -0.7 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b1279 | yciS | -1.1 | -1.1 | conserved inner membrane protein (NCBI) | compare |
| b1749 | xthA | -1.1 | -3.4 | exonuclease III (NCBI) | compare |
| b4239 | treC | -1.0 | -2.4 | trehalose-6-P hydrolase (NCBI) | compare |
| b4546 | ypeB | -1.0 | -1.4 | hypothetical protein (NCBI) | compare |
| b3198 | kdsC | -1.0 | -4.7 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b4451 | ryhB | -1.0 | -1.4 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b0051 | ksgA | -1.0 | -3.2 | dimethyladenosine transferase (NCBI) | compare |
| b0812 | dps | -1.0 | -4.4 | DNA protection during starvation conditions (NCBI) | compare |
| b1108 | ycfP | -1.0 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4702 | mgtL | -1.0 | -2.0 | regulatory leader peptide for mgtA (NCBI) | compare |
| b1506 | yneL | -1.0 | -0.9 | predicted transcriptional regulator (NCBI) | compare |
| b2846 | yqeH | -1.0 | -0.5 | orf, hypothetical protein (VIMSS) | compare |
| b3043 | ygiL | -1.0 | -4.6 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b3652 | recG | -1.0 | -5.9 | ATP-dependent DNA helicase (NCBI) | compare |
| b1862 | yebB | -1.0 | -3.4 | orf, hypothetical protein (VIMSS) | compare |
| b1712 | ihfA | -0.9 | -1.9 | integration host factor subunit alpha (NCBI) | compare |
| b0890 | ftsK | -0.9 | -4.0 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b4242 | mgtA | -0.9 | -6.3 | magnesium transporter (NCBI) | compare |
| b0912 | ihfB | -0.9 | -2.2 | integration host factor subunit beta (NCBI) | compare |
| b3916 | pfkA | -0.9 | -2.6 | 6-phosphofructokinase (NCBI) | compare |
| b1130 | phoP | -0.9 | -1.5 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b3026 | qseC | -0.8 | -3.3 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b3229 | sspA | -0.8 | -2.0 | stringent starvation protein A (NCBI) | compare |
| b0658 | ybeX | -0.8 | -0.6 | predicteed ion transport (NCBI) | compare |
| b1527 | yneK | -0.8 | -2.2 | hypothetical protein (NCBI) | compare |
| b3649 | rpoZ | -0.8 | -1.9 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b0989 | cspH | -0.8 | -2.1 | stress protein, member of the CspA-family (NCBI) | compare |
| b0059 | hepA | -0.8 | -6.3 | ATP-dependent helicase HepA (NCBI) | compare |
| b1968 | yedV | -0.8 | -2.6 | predicted sensory kinase in two-component regulatory system with YedW (NCBI) | compare |
| b0101 | yacG | -0.8 | -1.7 | zinc-binding protein (NCBI) | compare |
| b2518 | ndk | -0.8 | -1.8 | nucleoside diphosphate kinase (NCBI) | compare |
| b2289 | lrhA | -0.8 | -4.5 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b4426 | isrA | -0.8 | -1.5 | unknown RNA (NCBI) | compare |
| b2652 | ileY | -0.8 | -0.5 | tRNA-Ile (NCBI) | compare |
| b3624 | rfaZ | -0.8 | -2.2 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2565 | recO | -0.8 | -2.6 | DNA repair protein RecO (NCBI) | compare |
| b1196 | ycgY | -0.7 | -2.2 | hypothetical protein (NCBI) | compare |
| b2297 | pta | -0.7 | -0.7 | phosphate acetyltransferase (NCBI) | compare |
| b4184 | yjfL | -0.7 | -2.6 | conserved inner membrane protein (NCBI) | compare |
| b1134 | ymfB | -0.7 | -2.1 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b1523 | yneG | -0.7 | -1.6 | hypothetical protein (NCBI) | compare |
| b3870 | glnA | -0.7 | -1.7 | glutamine synthetase (NCBI) | compare |
| b1028 | ymdE | -0.7 | -3.1 | orf, hypothetical protein (VIMSS) | compare |
| b1165 | ymgA | -0.7 | -0.5 | hypothetical protein (NCBI) | compare |
| b0310 | ykgH | -0.7 | -0.9 | predicted inner membrane protein (NCBI) | compare |
| b0145 | dksA | -0.7 | -2.0 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b4201 | priB | -0.7 | -1.4 | primosomal replication protein N (NCBI) | compare |
| b2376 | ypdI | -0.7 | -2.8 | predicted lipoprotein involved in colanic acid biosynthesis (NCBI) | compare |
| b2369 | evgA | -0.7 | -2.9 | DNA-binding response regulator in two-component regulatory system with EvgS (NCBI) | compare |
| b1758 | b1758 | -0.7 | -1.0 | putative cytochrome oxidase (VIMSS) | compare |
| b2498 | upp | -0.7 | -1.8 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b4177 | purA | -0.7 | -1.2 | adenylosuccinate synthetase (NCBI) | compare |
| b3764 | yifE | -0.7 | -2.8 | hypothetical protein (NCBI) | compare |
| b1684 | sufA | -0.7 | -2.3 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b0580 | ybdJ | -0.7 | -1.0 | predicted inner membrane protein (NCBI) | compare |
| b3210 | arcB | -0.7 | -3.4 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b2111 | yehD | -0.7 | -2.1 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1400 | paaY | -0.7 | -1.4 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b0953 | rmf | -0.7 | -1.4 | ribosome modulation factor (NCBI) | compare |
| b1269 | rluB | -0.7 | -2.4 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b2061 | wzb | -0.7 | -1.5 | protein-tyrosine phosphatase (NCBI) | compare |
| b4048 | yjbM | -0.7 | -1.5 | hypothetical protein (NCBI) | compare |
| b0550 | rusA | -0.7 | -1.3 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b1642 | slyA | -0.7 | -1.1 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b1409 | ynbB | -0.7 | -0.4 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b0386 | proC | -0.7 | -2.4 | pyrroline-5-carboxylate reductase (NCBI) | compare |
| b1330 | ynaI | -0.6 | -2.7 | conserved inner membrane protein (NCBI) | compare |
| b3806 | cyaA | -0.6 | -3.0 | adenylate cyclase (NCBI) | compare |
| b0439 | lon | -0.6 | -2.3 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b1600 | mdtJ | -0.6 | -1.3 | multidrug efflux system transporter (NCBI) | compare |
| b4480 | hdfR | -0.6 | -2.7 | transcriptional regulator HdfR (NCBI) | compare |
| b1346 | ydaQ | -0.6 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b3700 | recF | -0.6 | -4.5 | recombination protein F (NCBI) | compare |
| b4436 | ryeC | -0.6 | -1.1 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1164 | ycgZ | -0.6 | -1.3 | hypothetical protein (NCBI) | compare |
| b1505 | ydeT | -0.6 | -0.8 | hypothetical protein (RefSeq) | compare |
| b1291 | sapD | -0.6 | -0.9 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b2808 | gcvA | -0.6 | -2.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0974 | hyaC | -0.6 | -2.0 | hydrogenase 1, b-type cytochrome subunit (NCBI) | compare |
| b4685 | yrbN | -0.6 | -1.6 | expressed protein (RefSeq) | compare |
| b0472 | recR | -0.6 | -4.1 | recombination protein RecR (NCBI) | compare |
| b4503 | yafF | -0.6 | -0.5 | no description | compare |
| b3462 | ftsX | -0.6 | -3.4 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1677 | lpp | -0.6 | -1.1 | murein lipoprotein (NCBI) | compare |
| b0949 | uup | -0.6 | -3.5 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1195 | ymgE | -0.6 | -1.5 | predicted inner membrane protein (NCBI) | compare |
| b2195 | ccmG | -0.6 | -1.0 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b1553 | ydfP | -0.6 | -1.1 | Qin prophage; conserved protein (NCBI) | compare |
| b1125 | potB | -0.6 | -1.4 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b3493 | pitA | -0.6 | -3.4 | phosphate transporter, low-affinity (NCBI) | compare |
| b1524 | yneH | -0.6 | -0.6 | predicted glutaminase (NCBI) | compare |
| b4603 | rseX | -0.6 | -0.5 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3726 | pstA | -0.6 | -1.9 | phosphate transporter subunit (NCBI) | compare |
| b3728 | pstS | -0.6 | -2.0 | phosphate transporter subunit (NCBI) | compare |
| b0143 | pcnB | -0.6 | -2.6 | poly(A) polymerase I (VIMSS) | compare |
| b2047 | wcaJ | -0.5 | -2.9 | predicted UDP-glucose lipid carrier transferase (NCBI) | compare |
| b0888 | trxB | -0.5 | -2.1 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b0767 | ybhE | -0.5 | -1.8 | 6-phosphogluconolactonase (NCBI) | compare |
| b3162 | deaD | -0.5 | -2.2 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b2617 | smpA | -0.5 | -1.4 | small membrane protein A (VIMSS) | compare |
| b4416 | rybA | -0.5 | -0.9 | unknown RNA (NCBI) | compare |
| b4522 | yciX_1 | -0.5 | -1.0 | hypothetical protein (NCBI) | compare |
| b2252 | ais | -0.5 | -2.7 | hypothetical protein (NCBI) | compare |
| b1950 | fliR | -0.5 | -1.5 | flagellar biosynthesis protein R (NCBI) | compare |
| b4094 | phnN | -0.5 | -1.9 | ribose 1,5-bisphosphokinase (NCBI) | compare |
| b0791 | ybhQ | -0.5 | -2.1 | predicted inner membrane protein (NCBI) | compare |
| b4093 | phnO | -0.5 | -2.3 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b3181 | greA | -0.5 | -2.6 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b0456 | ybaA | -0.5 | -2.2 | hypothetical protein (NCBI) | compare |
| b1359 | ydaU | -0.5 | -1.4 | Rac prophage; conserved protein (NCBI) | compare |
| b1295 | ymjA | -0.5 | -1.1 | hypothetical protein (NCBI) | compare |
| b3545 | proK | -0.5 | -1.1 | tRNA-Pro (NCBI) | compare |
| b4179 | vacB | -0.5 | -2.6 | putative enzyme (VIMSS) | compare |
| b0746 | valZ | -0.5 | -1.6 | tRNA-Val (NCBI) | compare |
| b2741 | rpoS | -0.5 | -2.4 | RNA polymerase sigma factor (NCBI) | compare |
| b1711 | btuC | -0.5 | -1.9 | vtamin B12-transporter permease (NCBI) | compare |
| b2659 | b2659 | -0.5 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4513 | kdpF | -0.5 | -0.8 | potassium ion accessory transporter subunit (NCBI) | compare |
| b4431 | rprA | -0.5 | -1.2 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b0212 | gloB | -0.5 | -0.9 | predicted hydroxyacylglutathione hydrolase (NCBI) | compare |
| b4541 | yehK | -0.5 | -1.8 | hypothetical protein (NCBI) | compare |
| b2301 | yfcF | -0.5 | -2.4 | predicted enzyme (NCBI) | compare |
| b3813 | uvrD | -0.5 | -4.1 | DNA-dependent ATPase I and helicase II (NCBI) | compare |
| b1383 | ydbL | -0.5 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b3623 | rfaK | -0.5 | -1.4 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b0018 | mokC | -0.5 | -0.8 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b1831 | proQ | -0.5 | -1.5 | putative solute/DNA competence effector (NCBI) | compare |
| b1643 | ydhI | -0.5 | -1.6 | predicted inner membrane protein (NCBI) | compare |
| b0991 | ymcE | -0.5 | -2.1 | cold shock gene (NCBI) | compare |
| b0279 | yagM | -0.5 | -0.3 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b2317 | dedA | -0.5 | -2.0 | conserved inner membrane protein (NCBI) | compare |
| b4462 | ygaQ | -0.5 | -0.7 | hypothetical protein (RefSeq) | compare |
| b1058 | yceO | -0.5 | -0.2 | hypothetical protein (NCBI) | compare |
| b3875 | ompL | -0.5 | -1.7 | predicted outer membrane porin L (NCBI) | compare |
| b1143 | ymfI | -0.5 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0840 | deoR | -0.5 | -2.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2236 | yfaE | -0.5 | -1.7 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b1558 | cspF | -0.5 | -1.3 | Qin prophage; cold shock protein (NCBI) | compare |
| b3161 | mtr | -0.5 | -3.0 | tryptophan transporter of high affinity (NCBI) | compare |
| b4640 | yoeG | -0.5 | -1.7 | no description | compare |
| b2814 | metZ | -0.5 | -0.9 | tRNA-Met (NCBI) | compare |
| b0864 | artP | -0.5 | -2.1 | arginine transporter subunit (NCBI) | compare |
| b1499 | ydeO | -0.5 | -0.3 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b1144 | ymfJ | -0.5 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4441 | glmY | -0.5 | -0.9 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b1282 | yciH | -0.5 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b0001 | thrL | -0.5 | -1.5 | thr operon leader peptide (NCBI) | compare |
| b0099 | mutT | -0.5 | -1.5 | nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP (NCBI) | compare |
| b4536 | yobH | -0.4 | -1.0 | hypothetical protein (NCBI) | compare |
| b4413 | sokC | -0.4 | -0.8 | regulatory antisense RNA (NCBI) | compare |
| b4215 | ytfI | -0.4 | -1.0 | hypothetical protein (NCBI) | compare |
| b2476 | purC | -0.4 | -1.2 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b3871 | bipA | -0.4 | -3.3 | GTP-binding protein (NCBI) | compare |
| b0880 | cspD | -0.4 | -1.1 | cold shock protein homolog (NCBI) | compare |
| b0080 | fruR | -0.4 | -2.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3629 | rfaS | -0.4 | -1.7 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1824 | yobF | -0.4 | -1.0 | hypothetical protein (NCBI) | compare |
| b4042 | dgkA | -0.4 | -1.1 | diacylglycerol kinase (NCBI) | compare |
| b3794 | rffM | -0.4 | -2.6 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b2058 | wcaB | -0.4 | -0.6 | predicted acyl transferase (NCBI) | compare |