Experiment set34IT024 for Pseudomonas putida KT2440

Compare to:

LB outgrowth control more dilute start

200 most important genes:

  gene name fitness t score description  
PP_5309 -4.6 -8.2 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4902 -3.4 -3.2 Oligoribonuclease compare
PP_1097 -3.2 -2.2 Methionine--tRNA ligase compare
PP_5328 -3.0 -2.1 putative phosphate transport system permease protein compare
PP_1428 -2.7 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_5327 -2.7 -4.1 putative phosphate ABC transporter, permease subunit compare
PP_4880 -2.7 -10.4 exoribonuclease R compare
PP_0959 -2.7 -3.1 phospholipid ABC transporter compare
PP_4799 -2.6 -2.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0401 -2.4 -3.6 Ribosomal RNA small subunit methyltransferase A compare
PP_4126 -2.4 -2.9 NADH-quinone oxidoreductase subunit I compare
PP_4517 -2.3 -2.7 conserved protein of unknown function compare
PP_0691 -2.3 -1.6 Glutamate 5-kinase compare
PP_0833 -2.2 -1.5 queuine tRNA-ribosyltransferase compare
PP_5329 -2.2 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2337 -2.2 -3.2 aconitate isomerase compare
PP_4874 -2.0 -1.9 50S ribosomal protein L9 compare
PP_4700 -2.0 -2.7 pantothenate synthetase compare
PP_5338 -2.0 -4.2 aspartate ammonia-lyase compare
PP_1783 -1.9 -2.2 dTDP-glucose pyrophosphorylase compare
PP_t29 -1.8 -2.6 tRNA-Ala compare
PP_5546 -1.8 -2.3 conserved protein of unknown function compare
PP_0393 -1.7 -2.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5337 -1.7 -6.0 LysR family transcriptional regulator compare
PP_4964 -1.7 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_2322 -1.6 -4.8 Major outer membrane lipoprotein compare
PP_0801 -1.6 -2.0 conserved exported protein of unknown function compare
PP_0856 -1.6 -1.1 conserved lipoprotein of unknown function compare
PP_1055 -1.6 -2.1 Type II secretion pathway protein GspN compare
PP_4265 -1.6 -1.0 DNA-binding transcriptional dual regulator compare
PP_4342 -1.5 -3.5 flagellar synthesis regulator, putative ATPase compare
PP_4723 -1.5 -2.0 Carbamoyl-phosphate synthase large chain compare
PP_5095 -1.5 -1.4 pyrroline-5-carboxylate reductase compare
PP_0339 -1.5 -1.7 Pyruvate dehydrogenase E1 component compare
PP_2107 -1.4 -2.1 conserved protein of unknown function compare
PP_3505 -1.4 -2.7 conserved protein of unknown function compare
PP_5000 -1.4 -1.8 peptidase component of the ATP-dependent HslVU protease compare
PP_2144 -1.4 -3.6 Transcriptional regulator, TetR family compare
PP_5217 -1.4 -7.4 Polyphosphate kinase compare
PP_1731 -1.4 -3.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_0888 -1.3 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_1215 -1.3 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_4375 -1.3 -5.6 flagellar chaperone, inhibits premature FliC assembly compare
PP_1002 -1.3 -3.7 arginine/ornithine antiporter compare
PP_4261 -1.3 -5.0 cation-transporting P-type ATPase compare
PP_4251 -1.3 -3.4 cytochrome c oxidase subunit, cbb3-type compare
PP_0719 -1.3 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4098 -1.3 -2.6 UvrABC system protein C compare
PP_1650 -1.2 -9.5 Sensor protein GacS compare
PP_4004 -1.2 -3.6 DNA translocase FtsK compare
PP_5248 -1.2 -1.8 putative hydrolase compare
PP_5475 -1.2 -1.2 conserved protein of unknown function compare
PP_1128 -1.2 -2.8 OmpA family protein compare
PP_0834 -1.2 -2.4 Sec translocation complex subunit YajC compare
PP_4952 -1.2 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2615 -1.2 -2.4 hemolysin-coregulated protein compare
PP_4560 -1.1 -2.0 putative Ribonuclease BN compare
PP_1733 -1.1 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1609 -1.1 -1.2 conserved protein of unknown function compare
PP_1186 -1.1 -1.9 two component system DNA-binding transcriptional dual regulator compare
PP_1734 -1.1 -3.0 Probable septum site-determining protein MinC compare
PP_4988 -1.1 -4.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4546 -1.1 -3.3 ATP-dependent helicase HrpA compare
PP_1679 -1.1 -2.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1629 -1.1 -4.6 Protein RecA compare
PP_1553 -1.1 -1.5 conserved protein of unknown function compare
PP_4099 -1.1 -9.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1054 -1.1 -1.8 Type II secretion pathway protein XcpZ compare
PP_5571 -1.1 -1.7 conserved protein of unknown function compare
PP_4999 -1.1 -0.7 dihydroorotase-like protein compare
PP_4008 -1.1 -4.0 ATP-dependent serine protease compare
PP_4131 -1.1 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_5114 -1.0 -1.6 putative adenine methyltransferase compare
PP_4379 -1.0 -3.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1994 -1.0 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_4824 -1.0 -3.8 Sensor histidine kinase/response regulator compare
PP_4204 -1.0 -3.2 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1906 -1.0 -3.3 ribosomal large subunit pseudouridine synthase C compare
PP_5310 -1.0 -4.2 junction-specific ATP-dependent DNA helicase compare
PP_3248 -1.0 -2.6 Dyp-type peroxidase family protein compare
PP_3904 -1.0 -2.8 conserved protein of unknown function compare
PP_5230 -1.0 -2.3 Tyrosine recombinase XerC compare
PP_2640 -1.0 -2.5 Acetyltransferase, GNAT family compare
PP_4120 -1.0 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_1598 -1.0 -3.9 regulatory intramembrane protein RIP zinc protease compare
PP_2311 -1.0 -2.9 Mg-dependent cytoplasmic DNase / RNase compare
PP_5216 -1.0 -1.8 exopolyphosphatase compare
PP_5430 -1.0 -2.6 protein of unknown function compare
PP_4895 -1.0 -1.8 tRNA dimethylallyltransferase compare
PP_4482 -1.0 -2.2 Transcriptional regulator, AraC family compare
PP_5295 -1.0 -2.1 conserved protein of unknown function compare
PP_1344 -1.0 -1.2 conserved protein of unknown function compare
PP_1605 -1.0 -2.1 Ribonuclease HII compare
PP_4329 -1.0 -2.4 FlhB domain protein compare
PP_4121 -0.9 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PP_5058 -0.9 -2.9 Carboxy-terminal-processing protease compare
PP_5028 -0.9 -2.8 proline iminopeptidase compare
PP_4124 -0.9 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_2402 -0.9 -1.7 putative Sensor histidine kinase compare
PP_1268 -0.9 -2.2 putative HtrA suppressor protein sohA compare
PP_4909 -0.9 -3.9 phosphoserine phosphatase compare
PP_2253 -0.9 -1.5 Transcriptional regulator, GntR family compare
PP_3926 -0.9 -1.6 short-chain dehydrogenase compare
PP_1317 -0.9 -2.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4891 -0.9 -3.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2320 -0.9 -5.5 conserved exported protein of unknown function compare
PP_0832 -0.9 -2.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2029 -0.9 -2.5 von Willebrand factor type A domain protein compare
PP_0065 -0.9 -2.2 NAD-binding component of TrK potassium transporter compare
PP_0738 -0.9 -2.6 conserved protein of unknown function compare
PP_1374 -0.9 -3.3 conserved protein of unknown function compare
PP_5735 -0.9 -3.0 conserved hypothetical protein compare
PP_2274 -0.9 -2.7 conserved protein of unknown function compare
PP_1468 -0.9 -1.5 Tyrosine recombinase XerD compare
PP_4941 -0.9 -3.8 conserved exported protein of unknown function compare
PP_0002 -0.9 -4.6 probable chromosome partition protein compare
PP_4034 -0.9 -3.7 N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2 compare
PP_1985 -0.9 -2.5 3-isopropylmalate dehydratase large subunit compare
PP_4917 -0.9 -2.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1122 -0.9 -1.8 OmpA family protein compare
PP_1319 -0.9 -3.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2575 -0.9 -1.6 conserved exported protein of unknown function compare
PP_3102 -0.9 -2.5 conserved protein of unknown function compare
PP_0957 -0.9 -1.7 D-arabinose 5-phosphate isomerase compare
PP_4697 -0.9 -2.5 poly(A) polymerase compare
PP_4426 -0.9 -2.3 Amino acid ABC transporter, permease protein compare
PP_4273 -0.9 -1.6 Transcriptional regulator, MerR family compare
PP_0125 -0.9 -2.3 putative cytochrome c-type protein compare
PP_0846 -0.9 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_1702 -0.9 -2.4 Recombination-associated protein RdgC compare
PP_2414 -0.8 -1.2 conserved exported protein of unknown function compare
PP_2160 -0.8 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_0240 -0.8 -2.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4162 -0.8 -2.3 conserved membrane protein of unknown function compare
PP_3649 -0.8 -2.4 Transcriptional regulator, GntR family compare
PP_1362 -0.8 -2.5 pyruvate kinase II compare
PP_3037 -0.8 -2.0 C4-type zinc finger protein, DksA/TraR family compare
PP_5027 -0.8 -1.7 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2668 -0.8 -1.8 ABC efflux transporter, ATP-binding protein compare
PP_4910 -0.8 -1.9 conserved protein of unknown function compare
PP_1001 -0.8 -1.7 arginine deiminase compare
PP_0406 -0.8 -1.9 Nucleotidyltransferase family protein compare
PP_2147 -0.8 -2.5 conserved exported protein of unknown function compare
PP_2947 -0.8 -2.9 putative Transcriptional regulator MvaT, P16 subunit compare
PP_0188 -0.8 -3.3 putative Uroporphyrin-III C-methyltransferase compare
PP_3427 -0.8 -3.4 Multidrug efflux RND outer membrane protein OprN compare
PP_1697 -0.8 -2.0 transcriptional regulator, GntR family compare
PP_2336 -0.8 -1.8 aconitate hydratase 1 compare
PP_3999 -0.8 -3.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2214 -0.8 -1.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4262 -0.8 -1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4942 -0.8 -1.7 conserved protein of unknown function compare
PP_0725 -0.8 -2.4 conserved hypothetical TPR repeat protein compare
PP_4253 -0.8 -2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_4693 -0.7 -1.8 RNA polymerase-binding transcription factor DksA compare
PP_4471 -0.7 -2.3 Magnesium transporter compare
PP_0999 -0.7 -1.8 carbamate kinase compare
PP_4989 -0.7 -1.9 Protein PilJ compare
PP_0677 -0.7 -2.2 putative Lipoprotein compare
PP_2403 -0.7 -1.3 Chemotaxis protein CheY compare
PP_0274 -0.7 -1.3 putative transcriptional regulator containing HTH domain compare
PP_4129 -0.7 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1216 -0.7 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0063 -0.7 -3.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1986 -0.7 -1.9 3-isopropylmalate dehydratase small subunit compare
PP_5445 -0.7 -1.2 conserved protein of unknown function compare
PP_3748 -0.7 -2.0 conserved hypothetical protein compare
PP_3892 -0.7 -1.3 conserved protein of unknown function compare
PP_4215 -0.7 -2.9 pyoverdine biosynthesis related protein compare
PP_5317 -0.7 -1.8 Probable chorismate pyruvate-lyase compare
PP_4707 -0.7 -1.3 OsmY-related protein compare
PP_4699 -0.7 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4122 -0.7 -0.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0775 -0.7 -1.4 conserved protein of unknown function compare
PP_1353 -0.7 -1.4 conserved membrane protein of unknown function compare
PP_2030 -0.7 -2.0 conserved protein of unknown function compare
PP_2121 -0.7 -1.1 putative Lipoprotein compare
PP_5063 -0.7 -3.0 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_4944 -0.7 -2.0 Carbamoyltransferase compare
PP_0123 -0.7 -4.1 DNA polymerase I, 5 compare
PP_0787 -0.7 -2.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3286 -0.7 -2.9 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_3903 -0.7 -1.5 conserved protein of unknown function compare
PP_1208 -0.7 -0.8 conserved protein of unknown function, SlyX family compare
PP_5093 -0.7 -1.1 twitching motility protein compare
PP_5582 -0.7 -1.1 conserved protein of unknown function compare
PP_1589 -0.7 -4.3 uridylyltransferase compare
PP_1318 -0.7 -3.2 Cytochrome b compare
PP_1366 -0.7 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_2328 -0.7 -2.5 Phosphoadenosine phosphosulfate reductase compare
PP_2373 -0.7 -1.7 conserved protein of unknown function compare
PP_4993 -0.7 -2.8 Glutathione synthetase compare
PP_4778 -0.7 -1.8 23S rRNA pseudouridine 2457 synthase compare
PP_3946 -0.7 -0.5 HTH-type transcriptional repressor NicR compare
PP_2417 -0.7 -2.0 putative Iron ABC transporter, permease protein compare
PP_4724 -0.7 -0.9 Carbamoyl-phosphate synthase small chain compare
PP_1214 -0.7 -1.6 putative transcriptional regulatory protein compare
PP_0293 -0.7 -1.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1845 -0.7 -1.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_4263 -0.7 -1.7 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in lb outgrowth control more dilute start experiments

For lb outgrowth control more dilute start Kanamycin sulfate across organisms