Experiment set34IT024 for Pseudomonas putida KT2440

Compare to:

LB outgrowth control more dilute start

200 most detrimental genes:

  gene name fitness t score description  
PP_1655 +1.8 9.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1683 +1.1 3.9 Transcriptional regulator, MarR family compare
PP_1656 +1.0 4.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4859 +0.9 4.2 Transcriptional regulator, TetR family compare
PP_3098 +0.9 1.9 conserved protein of unknown function compare
PP_4561 +0.8 1.2 stress response protein compare
PP_2720 +0.8 1.8 conserved protein of unknown function compare
PP_4808 +0.8 1.9 23S rRNA m3psi1915 methyltransferase compare
PP_4701 +0.8 1.5 glucose-6-phosphate isomerase compare
PP_1493 +0.8 2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_t10 +0.8 1.9 tRNA-Pro compare
PP_4355 +0.8 2.5 flagellar export apparatus subunit compare
PP_0653 +0.8 1.7 conserved protein of unknown function compare
PP_2441 +0.7 2.6 conserved protein of unknown function compare
PP_5054 +0.7 1.4 glutaredoxin 3 compare
PP_4296 +0.7 2.0 conserved exported protein of unknown function compare
PP_2972 +0.7 2.0 conserved protein of unknown function compare
PP_0164 +0.7 2.2 conserved protein of unknown function compare
PP_5393 +0.7 1.6 putative metal-binding chaperone compare
PP_1307 +0.7 3.2 AsnC family transcriptional regulator compare
PP_t12 +0.7 1.1 tRNA-Thr compare
PP_0593 +0.7 1.0 putative ribosome-binding factor compare
PP_2203 +0.6 1.8 conserved protein of unknown function compare
PP_3014 +0.6 2.2 conserved exported protein of unknown function compare
PP_5423 +0.6 1.7 conserved membrane protein of unknown function compare
PP_2309 +0.6 1.2 conserved protein of unknown function compare
PP_4258 +0.6 2.0 cytochrome c oxidase subunit, cbb3-type compare
PP_1790 +0.5 2.3 putative Acylneuraminate cytidylyltransferase compare
PP_2568 +0.5 1.2 Ring-cleaving dioxygenase compare
PP_3460 +0.5 1.7 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2923 +0.5 2.3 conserved protein of unknown function compare
PP_5701 +0.5 1.2 conserved protein of unknown function compare
PP_5038 +0.5 1.3 conserved lipoprotein of unknown function compare
PP_5080 +0.5 2.6 type 4 pili biogenesis protein compare
PP_3052 +0.5 1.0 conserved protein of unknown function compare
PP_1020 +0.5 1.2 putative glucose-6-phosphate 1-epimerase compare
PP_3817 +0.5 1.6 Polyamine ABC transporter, ATP-binding protein compare
PP_2721 +0.5 2.2 conserved membrane protein of unknown function compare
PP_3051 +0.5 2.1 Pyocin R2_PP, tail spike protein compare
PP_0048 +0.5 1.1 conserved protein of unknown function compare
PP_3808 +0.5 0.5 Antibiotic synthesis protein MbtH compare
PP_0319 +0.5 1.3 conserved protein of unknown function compare
PP_3392 +0.5 0.9 conserved protein of unknown function compare
PP_1690 +0.5 1.9 conserved protein of unknown function compare
PP_1637 +0.5 2.5 Transcriptional regulator, LysR family compare
PP_4365 +0.5 2.2 Flagellar protein FliJ compare
PP_2196 +0.5 1.5 agmatinase compare
PP_4045 +0.5 1.5 conserved protein of unknown function compare
PP_4890 +0.5 1.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_5324 +0.4 1.4 Response regulator compare
PP_4580 +0.4 1.9 conserved protein of unknown function compare
PP_1776 +0.4 3.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4100 +0.4 2.9 Transcriptional regulator, Cro/CI family compare
PP_t11 +0.4 1.4 tRNA-Lys compare
PP_1516 +0.4 1.7 RND membrane fusion protein compare
PP_4528 +0.4 0.9 conserved protein of unknown function compare
PP_2931 +0.4 1.6 conserved protein of unknown function compare
PP_3866 +0.4 1.7 conserved protein of unknown function compare
PP_0025 +0.4 1.0 hypothetical protein compare
PP_4681 +0.4 1.8 conserved protein of unknown function compare
PP_4387 +0.4 1.4 conserved exported protein of unknown function compare
PP_5723 +0.4 2.2 protein of unknown function compare
PP_1799 +0.4 3.3 GDP-mannose 4,6-dehydratase compare
PP_2075 +0.4 2.2 conserved membrane protein of unknown function compare
PP_5232 +0.4 1.0 conserved protein of unknown function compare
PP_4213 +0.4 1.5 putative dipeptidase compare
PP_4349 +0.4 1.6 conserved protein of unknown function compare
PP_1534 +0.4 1.2 conserved protein of unknown function compare
PP_4406 +0.4 1.3 conserved protein of unknown function compare
PP_5604 +0.4 1.0 putative subtilisin-like serine protease compare
PP_0196 +0.4 2.8 putative of ABC superfamily informational factor: ATP-binding components compare
PP_2546 +0.4 2.5 conserved membrane protein of unknown function compare
PP_5561 +0.4 1.9 conserved protein of unknown function compare
PP_3938 +0.4 1.1 conserved protein of unknown function compare
PP_4939 +0.4 2.6 conserved protein of unknown function compare
PP_1802 +0.4 3.3 glycosyl transferase compare
PP_1529 +0.4 2.1 Probable cysteine desulfurase compare
PP_5107 +0.4 1.4 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_3647 +0.4 1.4 putative Oxidoreductase compare
PP_1546 +0.4 1.7 conserved protein of unknown function compare
PP_2217 +0.4 0.9 enoyl-CoA hydratase compare
PP_0377 +0.4 1.0 coenzyme PQQ synthesis protein D compare
PP_2592 +0.4 1.7 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_1812 +0.4 1.2 conserved protein of unknown function compare
PP_4066 +0.4 1.2 methylglutaconyl-CoA hydratase compare
PP_1322 +0.4 0.6 putative Lipoprotein compare
PP_1584 +0.4 1.8 conserved protein of unknown function compare
PP_0089 +0.4 1.6 stress-induced peroxiredoxin, lipoyl-dependent peroxidase compare
PP_0311 +0.4 2.0 putative dimethylglycine dehydrogenase subunit compare
PP_0805 +0.4 2.7 Outer membrane efflux protein compare
PP_5491 +0.4 1.3 conserved protein of unknown function with SEC-C motif domain compare
PP_2002 +0.4 1.5 putative enzyme compare
PP_0340 +0.4 3.1 Glutamate-ammonia-ligase adenylyltransferase compare
PP_4584 +0.4 1.7 putative endonuclease compare
PP_2404 +0.4 1.7 conserved exported protein of unknown function compare
PP_0536 +0.4 1.7 conserved protein of unknown function compare
PP_5473 +0.4 0.6 putative transcriptional regulator, LuxR family compare
PP_3876 +0.4 0.8 conserved protein of unknown function compare
PP_0771 +0.4 2.1 mRNA interferase compare
PP_2928 +0.4 2.4 Saccharopine dehydrogenase compare
PP_1071 +0.4 2.1 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_2866 +0.4 1.5 FMN-dependent NADH-azoreductase 1 compare
PP_0900 +0.4 1.5 PAP2 family protein compare
PP_0283 +0.4 1.6 Arginine/ornithine transport ATP-binding protein AotP compare
PP_0936 +0.4 2.0 septum formation protein compare
PP_1410 +0.4 0.7 conserved protein of unknown function compare
PP_2681 +0.4 0.7 coenzyme PQQ synthesis protein D compare
PP_5083 +0.4 1.2 putative Type IV pili biogenesis protein PilM compare
PP_5565 +0.4 1.8 conserved protein of unknown function compare
PP_1803 +0.4 2.9 UDP-sugar epimerase compare
PP_3971 +0.4 0.8 conserved protein of unknown function compare
PP_1898 +0.4 0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_3840 +0.4 0.7 conserved protein of unknown function compare
PP_0294 +0.4 1.2 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_3917 +0.4 1.8 conserved protein of unknown function compare
PP_1544 +0.4 1.4 conserved protein of unknown function compare
PP_3158 +0.4 1.8 conserved exported protein of unknown function compare
PP_5698 +0.4 1.7 conserved exported protein of unknown function compare
PP_5487 +0.4 1.2 conserved protein of unknown function compare
PP_2760 +0.4 1.7 putative ribose transport permease protein compare
PP_1800 +0.4 2.4 Oxidoreductase Rmd compare
PP_0634 +0.4 1.1 Fimbrial protein compare
PP_5594 +0.4 1.1 conserved protein of unknown function compare
PP_0332 +0.4 1.5 putative Acyltransferase compare
PP_2842 +0.4 1.3 urease accessory protein compare
PP_5007 +0.4 0.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1328 +0.4 0.5 Protein MraZ compare
PP_2122 +0.3 1.0 molybdenum cofactor biosynthesis protein B compare
PP_2540 +0.3 1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3891 +0.3 1.2 conserved protein of unknown function compare
PP_1805 +0.3 2.9 Polysaccharide biosynthesis protein compare
PP_1294 +0.3 1.7 molybdopterin synthase large subunit compare
PP_1021 +0.3 1.9 DNA-binding transcriptional regulator compare
PP_1075 +0.3 2.2 glycerol kinase compare
PP_2291 +0.3 1.2 conserved protein of unknown function compare
PP_4581 +0.3 1.2 putative amidotransferase compare
PP_3768 +0.3 1.8 putative shikimate 5-dehydrogenase compare
PP_0574 +0.3 2.8 DNA-binding response regulator, LuxR family compare
PP_0425 +0.3 1.2 conserved protein of unknown function compare
PP_0685 +0.3 0.9 conserved protein of unknown function compare
PP_5059 +0.3 2.0 conserved exported protein of unknown function compare
PP_2631 +0.3 0.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5714 +0.3 1.0 conserved protein of unknown function compare
PP_3050 +0.3 1.7 conserved protein of unknown function compare
PP_2016 +0.3 1.2 conserved protein of unknown function compare
PP_2013 +0.3 1.9 conserved protein of unknown function compare
PP_4817 +0.3 1.4 MaoC domain protein compare
PP_4925 +0.3 1.0 conserved protein of unknown function compare
PP_0668 +0.3 1.2 putative Transmembrane sensor compare
PP_5267 +0.3 0.9 putative cytochrome c5 compare
PP_0361 +0.3 1.5 putative Competence protein ComF compare
PP_0177 +0.3 1.5 conserved protein of unknown function compare
PP_2705 +0.3 1.3 conserved protein of unknown function compare
PP_0737 +0.3 1.2 lipid A 3-O-deacylase compare
PP_2750 +0.3 0.9 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5636 +0.3 1.7 protein of unknown function compare
PP_2511 +0.3 1.2 conserved protein of unknown function compare
PP_3531 +0.3 1.4 conserved exported protein of unknown function compare
PP_2998 +0.3 1.7 2-dehydropantoate 2-reductase compare
PP_1270 +0.3 1.5 Transcriptional regulator, LysR family compare
PP_4370 +0.3 1.6 Flagellar hook-basal body complex protein FliE compare
PP_0946 +0.3 1.7 superoxide dismutase (Mn) compare
PP_2103 +0.3 1.2 conserved protein of unknown function compare
PP_4940 +0.3 2.2 Putative glycosyltransferase compare
PP_1056 +0.3 1.7 putative Iron-chelator utilization protein compare
PP_5597 +0.3 1.2 conserved protein of unknown function compare
PP_3617 +0.3 1.4 conserved membrane protein of unknown function compare
PP_1583 +0.3 1.4 putative Structural protein P5 compare
PP_2194 +0.3 1.5 Transcriptional regulator, LysR family compare
PP_1691 +0.3 1.2 conserved protein of unknown function compare
PP_4030 +0.3 1.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_2520 +0.3 1.1 conserved protein of unknown function compare
PP_3376 +0.3 1.2 putative phosphonate dehydrogenase compare
PP_4311 +0.3 1.7 putative D-amino acid dehydrogenase 2 small subunit compare
PP_2981 +0.3 2.4 putative cointegrate resolution protein S compare
PP_5557 +0.3 1.0 protein of unknown function compare
PP_1694 +0.3 1.8 DNA recombination limiting inversions protein compare
PP_0301 +0.3 1.6 betainyl-CoA thiolase compare
PP_1218 +0.3 1.0 putative acyl-CoA thioesterase compare
PP_4957 +0.3 0.7 conserved protein of unknown function compare
PP_0657 +0.3 1.8 putative Amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_3055 +0.3 1.4 Pyocin R2_PP, tail formation protein compare
PP_3303 +0.3 1.8 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
PP_0585 +0.3 0.6 putative metal-sensitive transcriptional regulator, MerR family compare
PP_3807 +0.3 1.6 Thioesterase compare
PP_5022 +0.3 0.8 Glutamine transport ATP-binding protein GlnQ compare
PP_1825 +0.3 1.3 conserved exported protein of unknown function compare
PP_2084 +0.3 1.6 Putative regulator of ribonuclease activity compare
PP_4953 +0.3 1.4 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_2826 +0.3 1.3 Transcriptional regulator MexT compare
PP_1451 +0.3 1.1 conserved exported protein of unknown function compare
PP_4540 +0.3 1.7 Hydrolase, alpha/beta fold family compare
PP_0782 +0.3 1.3 conserved protein of unknown function compare
PP_4669 +0.3 1.2 OmpA family protein compare
PP_4217 +0.3 2.8 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2745 +0.3 1.2 Universal stress protein family compare
PP_0547 +0.3 1.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0894 +0.3 1.9 conserved protein of unknown function compare
PP_3821 +0.3 2.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0607 +0.3 0.7 putative Type IV pili biogenesis protein FimT compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in lb outgrowth control more dilute start experiments

For lb outgrowth control more dilute start Kanamycin sulfate across organisms