Experiment set34IT021 for Pseudomonas putida KT2440

Compare to:

LB outgrowth control more dilute start

200 most important genes:

  gene name fitness t score description  
PP_5309 -5.7 -5.6 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4799 -3.2 -2.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4126 -2.9 -3.4 NADH-quinone oxidoreductase subunit I compare
PP_0401 -2.8 -4.5 Ribosomal RNA small subunit methyltransferase A compare
PP_5328 -2.4 -2.8 putative phosphate transport system permease protein compare
PP_1001 -2.4 -3.6 arginine deiminase compare
PP_0833 -2.4 -1.6 queuine tRNA-ribosyltransferase compare
PP_4902 -2.3 -3.4 Oligoribonuclease compare
PP_4880 -2.3 -10.6 exoribonuclease R compare
PP_4700 -2.2 -2.6 pantothenate synthetase compare
PP_1783 -2.1 -2.5 dTDP-glucose pyrophosphorylase compare
PP_3946 -2.1 -2.0 HTH-type transcriptional repressor NicR compare
PP_5337 -2.1 -7.0 LysR family transcriptional regulator compare
PP_5095 -2.0 -1.9 pyrroline-5-carboxylate reductase compare
PP_4874 -2.0 -1.8 50S ribosomal protein L9 compare
PP_2322 -1.9 -5.5 Major outer membrane lipoprotein compare
PP_5329 -1.9 -2.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0691 -1.9 -1.8 Glutamate 5-kinase compare
PP_0001 -1.8 -2.7 probable chromosome-partitioning protein compare
PP_5327 -1.8 -4.1 putative phosphate ABC transporter, permease subunit compare
PP_4268 -1.8 -2.4 nucleoid-associated broad specificity regulator compare
PP_4546 -1.8 -4.7 ATP-dependent helicase HrpA compare
PP_5216 -1.7 -2.6 exopolyphosphatase compare
PP_1994 -1.7 -3.1 tRNA pseudouridine (38-40)synthase compare
PP_4265 -1.7 -1.1 DNA-binding transcriptional dual regulator compare
PP_5217 -1.6 -8.3 Polyphosphate kinase compare
PP_4895 -1.6 -2.4 tRNA dimethylallyltransferase compare
PP_4993 -1.6 -4.7 Glutathione synthetase compare
PP_5338 -1.6 -3.9 aspartate ammonia-lyase compare
PP_0856 -1.6 -1.5 conserved lipoprotein of unknown function compare
PP_1002 -1.6 -4.2 arginine/ornithine antiporter compare
PP_0801 -1.5 -1.9 conserved exported protein of unknown function compare
PP_0593 -1.5 -1.3 putative ribosome-binding factor compare
PP_t29 -1.5 -2.4 tRNA-Ala compare
PP_2999 -1.5 -2.0 Glyoxalase family protein compare
PP_1128 -1.5 -4.1 OmpA family protein compare
PP_4723 -1.5 -2.8 Carbamoyl-phosphate synthase large chain compare
PP_0339 -1.5 -2.3 Pyruvate dehydrogenase E1 component compare
PP_4697 -1.4 -3.8 poly(A) polymerase compare
PP_2337 -1.4 -2.2 aconitate isomerase compare
PP_0832 -1.4 -3.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4517 -1.3 -2.5 conserved protein of unknown function compare
PP_1186 -1.3 -2.0 two component system DNA-binding transcriptional dual regulator compare
PP_2336 -1.3 -3.1 aconitate hydratase 1 compare
PP_1629 -1.3 -5.7 Protein RecA compare
PP_1553 -1.3 -1.8 conserved protein of unknown function compare
PP_0627 -1.3 -2.9 conserved protein of unknown function compare
PP_4120 -1.3 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_3447 -1.3 -1.7 conserved membrane protein of unknown function compare
PP_0393 -1.3 -2.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4271 -1.3 -1.4 conserved protein of unknown function compare
PP_4263 -1.2 -3.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4892 -1.2 -5.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2144 -1.2 -3.4 Transcriptional regulator, TetR family compare
PP_4999 -1.2 -0.8 dihydroorotase-like protein compare
PP_4008 -1.2 -4.2 ATP-dependent serine protease compare
PP_5198 -1.2 -3.3 conserved protein of unknown function compare
PP_2439 -1.1 -3.4 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4988 -1.1 -5.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4342 -1.1 -3.2 flagellar synthesis regulator, putative ATPase compare
PP_5310 -1.1 -5.0 junction-specific ATP-dependent DNA helicase compare
PP_0874 -1.1 -1.9 conserved protein of unknown function compare
PP_4724 -1.1 -1.0 Carbamoyl-phosphate synthase small chain compare
PP_0846 -1.1 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_4109 -1.1 -2.5 conserved protein of unknown function compare
PP_1319 -1.1 -4.5 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0065 -1.1 -2.8 NAD-binding component of TrK potassium transporter compare
PP_1764 -1.1 -2.6 Phosphoglycolate phosphatase 2 compare
PP_3999 -1.0 -4.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4560 -1.0 -2.2 putative Ribonuclease BN compare
PP_0214 -1.0 -5.3 4-aminobutyrate aminotransferase compare
PP_4122 -1.0 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4532 -1.0 -2.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1317 -1.0 -3.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1598 -1.0 -2.9 regulatory intramembrane protein RIP zinc protease compare
PP_1719 -1.0 -4.6 Tail-specific protease prc compare
PP_5350 -1.0 -2.9 Transcriptional regulator, RpiR family compare
PP_1702 -1.0 -3.3 Recombination-associated protein RdgC compare
PP_2903 -1.0 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4964 -1.0 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_1216 -1.0 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2402 -1.0 -1.8 putative Sensor histidine kinase compare
PP_4824 -0.9 -4.3 Sensor histidine kinase/response regulator compare
PP_1650 -0.9 -6.8 Sensor protein GacS compare
PP_4253 -0.9 -2.5 cytochrome c oxidase subunit, cbb3-type compare
PP_0999 -0.9 -1.9 carbamate kinase compare
PP_4121 -0.9 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_3580 -0.9 -1.9 conserved protein of unknown function compare
PP_1734 -0.9 -2.9 Probable septum site-determining protein MinC compare
PP_0848 -0.9 -1.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1428 -0.9 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_4937 -0.9 -3.4 toluene tolerance protein compare
PP_5139 -0.9 -3.5 cadmium translocating P-type ATPase compare
PP_4591 -0.9 -3.0 Ribonuclease D compare
PP_0218 -0.9 -4.8 Sensory box protein compare
PP_4260 -0.9 -3.4 conserved protein of unknown function compare
PP_4941 -0.9 -4.1 conserved exported protein of unknown function compare
PP_1548 -0.9 -1.4 conserved protein of unknown function compare
PP_4375 -0.9 -3.7 flagellar chaperone, inhibits premature FliC assembly compare
PP_2320 -0.9 -5.1 conserved exported protein of unknown function compare
PP_0246 -0.9 -1.6 two-component system DNA-binding response transcriptional dual regulator compare
PP_3637 -0.9 -1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4004 -0.9 -2.9 DNA translocase FtsK compare
PP_0191 -0.9 -2.6 Transcriptional regulatory protein AlgQ compare
PP_5001 -0.8 -2.5 protease HslVU, ATPase component compare
PP_5028 -0.8 -2.8 proline iminopeptidase compare
PP_2847 -0.8 -1.8 Urease accessory protein UreJ compare
PP_4131 -0.8 -3.3 NADH-quinone oxidoreductase subunit N compare
PP_4251 -0.8 -1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_0888 -0.8 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_4168 -0.8 -3.0 conserved protein of unknown function compare
PP_4099 -0.8 -7.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2324 -0.8 -4.0 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_3098 -0.8 -1.0 conserved protein of unknown function compare
PP_4379 -0.8 -2.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1733 -0.8 -1.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_4917 -0.8 -2.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4129 -0.8 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4471 -0.8 -2.8 Magnesium transporter compare
PP_4262 -0.8 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1468 -0.8 -1.2 Tyrosine recombinase XerD compare
PP_2631 -0.8 -1.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2160 -0.8 -2.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4130 -0.8 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0108 -0.8 -2.8 conserved protein of unknown function compare
PP_1318 -0.8 -4.0 Cytochrome b compare
PP_1326 -0.8 -2.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2313 -0.8 -1.2 conserved membrane protein of unknown function compare
PP_4942 -0.8 -1.9 conserved protein of unknown function compare
PP_0434 -0.8 -2.9 Anhydro-N-acetylmuramic acid kinase compare
PP_0673 -0.8 -1.6 conserved protein of unknown function compare
PP_1062 -0.8 -1.7 MutT/nudix family protein compare
PP_1096 -0.8 -1.5 putative electron transport complex protein compare
PP_0135 -0.8 -3.0 conserved exported protein of unknown function compare
PP_4693 -0.8 -1.9 RNA polymerase-binding transcription factor DksA compare
PP_1237 -0.8 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4204 -0.8 -2.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0719 -0.7 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0513 -0.7 -0.9 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5230 -0.7 -2.6 Tyrosine recombinase XerC compare
PP_2340 -0.7 -2.6 conserved protein of unknown function compare
PP_5604 -0.7 -1.4 putative subtilisin-like serine protease compare
PP_0960 -0.7 -2.7 phospholipid ABC transporter binding protein compare
PP_4261 -0.7 -3.0 cation-transporting P-type ATPase compare
PP_4406 -0.7 -1.7 conserved protein of unknown function compare
PP_2323 -0.7 -2.9 conserved protein of unknown function compare
PP_4891 -0.7 -3.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5000 -0.7 -1.4 peptidase component of the ATP-dependent HslVU protease compare
PP_4726 -0.7 -1.7 Chaperone protein DnaJ compare
PP_3519 -0.7 -1.0 putative Lipoprotein compare
PP_1676 -0.7 -2.6 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0547 -0.7 -2.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0083 -0.7 -2.9 tryptophan synthase beta chain compare
PP_0725 -0.7 -2.1 conserved hypothetical TPR repeat protein compare
PP_2378 -0.7 -1.4 Fe/S biogenesis protein NfuA compare
PP_0003 -0.7 -2.2 16S RNA methyltransferase compare
PP_3947 -0.7 -3.1 nicotinate dehydrogenase subunit A compare
PP_5583 -0.7 -0.9 conserved protein of unknown function compare
PP_0758 -0.7 -2.3 conserved protein of unknown function compare
PP_5055 -0.7 -2.5 Sulfurtransferase compare
PP_2371 -0.7 -2.9 Sulphite reductase hemoprotein, beta subunit compare
PP_5227 -0.7 -3.5 diaminopimelate decarboxylase compare
PP_0274 -0.7 -1.2 putative transcriptional regulator containing HTH domain compare
PP_3730 -0.7 -1.7 Transcriptional regulatory protein AruR compare
PP_0484 -0.7 -3.1 transporter of an unknown substrate compare
PP_0086 -0.7 -1.6 conserved protein of unknown function compare
PP_3048 -0.7 -1.5 conserved protein of unknown function compare
PP_1000 -0.6 -1.9 ornithine carbamoyltransferase, catabolic compare
PP_1672 -0.6 -1.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3903 -0.6 -1.6 conserved protein of unknown function compare
PP_5279 -0.6 -2.1 conserved protein of unknown function compare
PP_0007 -0.6 -1.6 conserved hypothetical protein compare
PP_3427 -0.6 -2.3 Multidrug efflux RND outer membrane protein OprN compare
PP_1981 -0.6 -2.0 tRNA-dihydrouridine synthase C compare
PP_5274 -0.6 -0.9 conserved protein of unknown function compare
PP_0978 -0.6 -2.1 conserved protein of unknown function compare
PP_1355 -0.6 -4.1 Muropeptide permease AmpG compare
PP_2416 -0.6 -1.3 putative Iron ABC transporter, ATP-binding protein compare
PP_1442 -0.6 -2.3 conserved protein of unknown function compare
PP_2163 -0.6 -2.8 VacJ lipoprotein compare
PP_1589 -0.6 -3.9 uridylyltransferase compare
PP_2328 -0.6 -2.4 Phosphoadenosine phosphosulfate reductase compare
PP_3902 -0.6 -1.4 conserved protein of unknown function compare
PP_0119 -0.6 -1.5 putative zinc uptake regulation protein ZUR compare
PP_4909 -0.6 -2.8 phosphoserine phosphatase compare
PP_0984 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_1022 -0.6 -2.4 glucose 6-phosphate-1-dehydrogenase compare
PP_1410 -0.6 -0.9 conserved protein of unknown function compare
PP_1752 -0.6 -3.0 conserved protein of unknown function compare
PP_2939 -0.6 -2.5 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_2029 -0.6 -1.8 von Willebrand factor type A domain protein compare
PP_3649 -0.6 -1.6 Transcriptional regulator, GntR family compare
PP_1552 -0.6 -2.2 putative Phage replication protein compare
PP_4804 -0.6 -1.2 RlpA-like lipoprotein compare
PP_0834 -0.6 -1.5 Sec translocation complex subunit YajC compare
PP_4124 -0.6 -2.0 NADH-quinone oxidoreductase subunit G compare
PP_0405 -0.6 -3.5 conserved protein of unknown function compare
PP_2970 -0.6 -1.7 conserved exported protein of unknown function compare
PP_3480 -0.6 -1.9 conserved protein of unknown function compare
PP_2414 -0.6 -1.0 conserved exported protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in lb outgrowth control more dilute start experiments

For lb outgrowth control more dilute start Kanamycin sulfate across organisms