Experiment set34IT021 for Pseudomonas putida KT2440

Compare to:

LB outgrowth control more dilute start

200 most detrimental genes:

  gene name fitness t score description  
PP_1655 +1.8 7.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0948 +1.2 3.0 Phosphocarrier protein HPr compare
PP_4355 +1.2 3.2 flagellar export apparatus subunit compare
PP_1656 +1.0 4.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_0276 +1.0 2.4 Transcriptional regulator, Cro/CI family compare
PP_2883 +0.8 2.5 conserved protein of unknown function compare
PP_0905 +0.8 2.8 conserved exported protein of unknown function compare
PP_1568 +0.8 1.8 conserved protein of unknown function compare
PP_2718 +0.8 2.5 arsenic resistance transcriptional regulator compare
PP_5471 +0.7 2.1 putative response regulator receiver protein compare
PP_t12 +0.7 1.2 tRNA-Thr compare
PP_3075 +0.7 2.7 putative transcriptional regulator compare
PP_2396 +0.7 2.9 conserved exported protein of unknown function compare
PP_3014 +0.7 2.2 conserved exported protein of unknown function compare
PP_4199 +0.7 1.2 putative Lipoprotein compare
PP_4561 +0.7 0.8 stress response protein compare
PP_4385 +0.6 3.1 flagellar basal-body rod protein FlgG compare
PP_3824 +0.6 2.5 conserved exported protein of unknown function compare
PP_1269 +0.6 1.1 Universal stress protein family compare
PP_3866 +0.6 2.6 conserved protein of unknown function compare
PP_3726 +0.6 1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_1344 +0.6 1.0 conserved protein of unknown function compare
PP_3806 +0.6 1.8 Hydrolase, isochorismatase family compare
PP_0293 +0.6 1.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2568 +0.6 1.3 Ring-cleaving dioxygenase compare
PP_2705 +0.6 2.7 conserved protein of unknown function compare
PP_1776 +0.6 4.8 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4356 +0.6 2.5 Flagellar protein FliO compare
PP_3883 +0.6 2.0 putative Phage holin compare
PP_4354 +0.6 2.7 flagellar export apparatus subunit compare
PP_1546 +0.6 2.4 conserved protein of unknown function compare
PP_0585 +0.6 1.0 putative metal-sensitive transcriptional regulator, MerR family compare
PP_4365 +0.6 3.1 Flagellar protein FliJ compare
PP_1799 +0.5 4.0 GDP-mannose 4,6-dehydratase compare
PP_4369 +0.5 3.4 Flagellar M-ring protein compare
PP_5093 +0.5 1.2 twitching motility protein compare
PP_4387 +0.5 1.3 conserved exported protein of unknown function compare
PP_2748 +0.5 1.6 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_2196 +0.5 1.6 agmatinase compare
PP_1366 +0.5 1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_1513 +0.5 1.0 Ribosomal RNA small subunit methyltransferase J compare
PP_2976 +0.5 1.4 putative transposase compare
PP_5674 +0.5 1.8 conserved protein of unknown function compare
PP_5491 +0.5 1.6 conserved protein of unknown function with SEC-C motif domain compare
PP_2581 +0.5 1.2 conserved protein of unknown function compare
PP_5594 +0.5 1.7 conserved protein of unknown function compare
PP_2950 +0.5 1.4 conserved protein of unknown function compare
PP_0025 +0.5 1.1 hypothetical protein compare
PP_4353 +0.5 3.2 Flagellar biosynthetic protein fliR compare
PP_0319 +0.5 1.5 conserved protein of unknown function compare
PP_4952 +0.5 1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5552 +0.5 1.6 conserved protein of unknown function compare
PP_1778 +0.5 2.8 Lipopolysaccharide ABC export system, permease protein compare
PP_4391 +0.5 2.6 flagellar basal-body rod protein FlgB compare
PP_0607 +0.5 1.9 putative Type IV pili biogenesis protein FimT compare
PP_5619 +0.5 2.1 protein of unknown function compare
PP_3880 +0.5 1.1 conserved exported protein of unknown function compare
PP_1528 +0.5 0.9 conserved protein of unknown function compare
PP_5483 +0.5 1.5 conserved protein of unknown function compare
PP_2878 +0.5 1.5 conserved protein of unknown function compare
PP_2197 +0.5 2.2 conserved exported protein of unknown function compare
PP_4296 +0.5 1.1 conserved exported protein of unknown function compare
PP_4768 +0.5 1.8 Exonuclease compare
PP_0653 +0.5 1.0 conserved protein of unknown function compare
PP_4383 +0.5 2.5 Flagellar P-ring protein compare
PP_3136 +0.5 2.4 putative O-acetyltransferase compare
PP_4994 +0.5 1.6 conserved protein of unknown function compare
PP_2857 +0.5 1.3 conserved exported protein of unknown function compare
PP_1028 +0.5 1.3 Transcriptional regulator, LysR family compare
PP_5039 +0.5 1.5 conserved protein of unknown function compare
PP_2121 +0.5 1.0 putative Lipoprotein compare
PP_4625 +0.5 1.7 anti-holin regulator of holin CidA compare
PP_t49 +0.5 2.1 tRNA-Met compare
PP_4314 +0.5 1.9 conserved protein of unknown function compare
PP_2400 +0.5 1.9 conserved protein of unknown function compare
PP_4769 +0.4 1.2 conserved protein of unknown function compare
PP_2502 +0.4 2.5 Transcriptional regulator, LysR family compare
PP_4370 +0.4 2.4 Flagellar hook-basal body complex protein FliE compare
PP_4394 +0.4 2.7 flagella basal body P-ring formation protein compare
PP_0694 +0.4 2.4 conserved protein of unknown function compare
PP_0236 +0.4 1.0 NAD(P)H-dependent FMN reductase subunit compare
PP_3256 +0.4 1.9 Glycosyl transferase, group 2 family protein compare
PP_2074 +0.4 2.1 Transcriptional regulator, LysR family compare
PP_2511 +0.4 1.7 conserved protein of unknown function compare
PP_4531 +0.4 2.1 conserved exported protein of unknown function compare
PP_2309 +0.4 0.9 conserved protein of unknown function compare
PP_2033 +0.4 3.3 conserved protein of unknown function compare
PP_1271 +0.4 1.4 putative Multidrug efflux MFS transporter compare
PP_5221 +0.4 1.4 conserved protein of unknown function, UPF0178 family compare
PP_4426 +0.4 1.3 Amino acid ABC transporter, permease protein compare
PP_0760 +0.4 1.2 conserved membrane protein of unknown function compare
PP_4217 +0.4 4.0 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5447 +0.4 2.4 conserved membrane protein of unknown function compare
PP_4352 +0.4 3.2 flagellin export apparatus, substrate specificity protein compare
PP_0886 +0.4 1.3 conserved exported protein of unknown function compare
PP_5475 +0.4 1.1 conserved protein of unknown function compare
PP_1328 +0.4 1.1 Protein MraZ compare
PP_4358 +0.4 2.3 flagellar synthesis, switching and energizing component compare
PP_3702 +0.4 2.0 conserved protein of unknown function compare
PP_1938 +0.4 1.4 conserved protein of unknown function compare
PP_2462 +0.4 1.3 conserved protein of unknown function compare
PP_4226 +0.4 1.5 conserved protein of unknown function compare
PP_4396 +0.4 0.9 conserved protein of unknown function compare
PP_4386 +0.4 2.5 flagellar basal-body rod protein FlgF compare
PP_0425 +0.4 1.6 conserved protein of unknown function compare
PP_0633 +0.4 1.5 Type 4 fimbrial assembly protein PilC compare
PP_5145 +0.4 3.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0821 +0.4 1.6 conserved exported protein of unknown function compare
PP_2078 +0.4 1.5 transcriptional activator protein LysR compare
PP_5533 +0.4 0.9 conserved protein of unknown function compare
PP_0081 +0.4 1.6 conserved protein of unknown function compare
PP_3971 +0.4 1.1 conserved protein of unknown function compare
PP_4247 +0.4 0.9 Exonuclease compare
PP_1454 +0.4 1.2 conserved protein of unknown function compare
PP_1800 +0.4 2.8 Oxidoreductase Rmd compare
PP_2823 +0.4 2.2 Methyl-accepting chemotaxis transducer compare
PP_0340 +0.4 3.3 Glutamate-ammonia-ligase adenylyltransferase compare
PP_1788 +0.4 1.4 conserved protein of unknown function compare
PP_4359 +0.4 2.4 Flagellar protein FliL compare
PP_0532 +0.4 2.2 conserved exported protein of unknown function compare
PP_0305 +0.4 1.4 HTH-type transcriptional regulator CdhR compare
PP_2291 +0.4 1.3 conserved protein of unknown function compare
PP_4115 +0.4 1.7 conserved exported protein of unknown function compare
PP_4368 +0.4 2.3 flagellar motor switch protein compare
PP_3244 +0.4 1.6 Magnesium transporter, MgtC family compare
PP_1986 +0.4 1.0 3-isopropylmalate dehydratase small subunit compare
PP_4797 +0.4 0.8 conserved protein of unknown function compare
PP_5422 +0.4 1.3 hypothetical protein compare
PP_5739 +0.4 2.3 protein of unknown function compare
PP_2129 +0.4 1.8 conserved protein of unknown function compare
PP_3051 +0.4 1.4 Pyocin R2_PP, tail spike protein compare
PP_3671 +0.4 1.8 Oxidoreductase, aldo/keto reductase family compare
PP_5191 +0.4 1.2 conserved exported protein of unknown function compare
PP_0361 +0.4 1.7 putative Competence protein ComF compare
PP_4939 +0.4 2.4 conserved protein of unknown function compare
PP_0440 +0.4 0.9 Elongation factor Tu-A compare
PP_5582 +0.4 0.8 conserved protein of unknown function compare
PP_5008 +0.4 0.8 Poly granule-associated protein compare
PP_4793 +0.4 1.1 conserved protein of unknown function compare
PP_4850 +0.4 1.9 conserved membrane protein of unknown function compare
PP_0151 +0.4 1.7 conserved exported protein of unknown function compare
PP_1789 +0.4 1.7 Hydrolase, haloacid dehalogenase-like family compare
PP_1632 +0.4 1.1 conserved protein of unknown function compare
PP_2357 +0.4 1.6 putative Type 1 pili protein CsuB compare
PP_4665 +0.4 2.3 conserved protein of unknown function compare
PP_4504 +0.4 0.6 conserved exported protein of unknown function compare
PP_0090 +0.4 1.9 conserved exported protein of unknown function compare
PP_2813 +0.4 1.4 BNR domain protein compare
PP_3864 +0.4 1.2 putative Phage FluMu DNA circulation protein compare
PP_3840 +0.4 0.7 conserved protein of unknown function compare
PP_4390 +0.4 2.3 flagellar basal-body rod protein FlgC compare
PP_4073 +0.4 1.2 conserved exported protein of unknown function compare
PP_3116 +0.4 1.5 transcriptional repressor compare
PP_4236 +0.4 1.4 putative Thiol:disulfide interchange protein dsbE compare
PP_0152 +0.4 0.9 conserved exported protein of unknown function compare
PP_2510 +0.4 1.0 conserved protein of unknown function compare
PP_3531 +0.4 1.3 conserved exported protein of unknown function compare
PP_1070 +0.4 1.7 glutamate / aspartate ABC transporter - permease subunit compare
PP_5651 +0.4 2.4 conserved protein of unknown function compare
PP_1051 +0.4 1.7 Type II secretion pathway protein XcpV compare
PP_4654 +0.4 2.5 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_4388 +0.3 2.8 Flagellar hook protein FlgE compare
PP_3679 +0.3 1.5 conserved protein of unknown function compare
PP_4094 +0.3 1.0 conserved protein of unknown function compare
PP_0805 +0.3 2.6 Outer membrane efflux protein compare
PP_4366 +0.3 2.9 flagellum-specific ATP synthase compare
PP_5393 +0.3 0.8 putative metal-binding chaperone compare
PP_3929 +0.3 1.7 conserved protein of unknown function compare
PP_4418 +0.3 1.7 conserved protein of unknown function compare
PP_4069 +0.3 1.4 conserved protein of unknown function compare
PP_1780 +0.3 3.1 putative mannosyltransferase compare
PP_5717 +0.3 0.9 conserved protein of unknown function compare
PP_4151 +0.3 1.5 Excisionase domain protein compare
PP_3876 +0.3 0.7 conserved protein of unknown function compare
PP_1729 +0.3 0.4 conserved protein of unknown function compare
PP_3149 +0.3 2.1 Transcriptional regulator, AraC family compare
PP_3693 +0.3 1.2 putative Transcriptional regulator MvaT, P16 subunit compare
PP_5247 +0.3 1.1 conserved protein of unknown function compare
PP_5144 +0.3 1.5 conserved protein of unknown function compare
PP_2572 +0.3 1.2 conserved protein of unknown function compare
PP_2132 +0.3 1.3 Universal stress protein compare
PP_5423 +0.3 1.0 conserved membrane protein of unknown function compare
PP_0574 +0.3 2.6 DNA-binding response regulator, LuxR family compare
PP_0583 +0.3 1.7 Transcriptional regulator, AraC family compare
PP_3190 +0.3 1.2 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_3541 +0.3 1.0 Transporter, MgtC family compare
PP_0301 +0.3 1.4 betainyl-CoA thiolase compare
PP_1766 +0.3 1.5 methylthioribose-1-phosphate isomerase compare
PP_2760 +0.3 1.6 putative ribose transport permease protein compare
PP_2622 +0.3 1.2 conserved protein of unknown function compare
PP_2247 +0.3 1.4 putative Endoribonuclease compare
PP_2248 +0.3 2.2 putative transporter compare
PP_2615 +0.3 0.9 hemolysin-coregulated protein compare
PP_5695 +0.3 1.4 conserved protein of unknown function compare
PP_4818 +0.3 1.2 ribosomal protein L11 methyltransferase compare
PP_5038 +0.3 1.0 conserved lipoprotein of unknown function compare
PP_0377 +0.3 0.9 coenzyme PQQ synthesis protein D compare
PP_1075 +0.3 2.1 glycerol kinase compare
PP_3917 +0.3 1.6 conserved protein of unknown function compare
PP_4171 +0.3 3.0 conserved exported protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in lb outgrowth control more dilute start experiments

For lb outgrowth control more dilute start Kanamycin sulfate across organisms