Experiment set34IT019 for Pseudomonas putida KT2440

Compare to:

LB outgrowth control

200 most important genes:

  gene name fitness t score description  
PP_4799 -3.1 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5095 -2.9 -1.9 pyrroline-5-carboxylate reductase compare
PP_0691 -2.5 -1.7 Glutamate 5-kinase compare
PP_0833 -2.5 -1.7 queuine tRNA-ribosyltransferase compare
PP_1001 -2.1 -3.7 arginine deiminase compare
PP_4874 -2.1 -1.9 50S ribosomal protein L9 compare
PP_1237 -1.8 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0856 -1.7 -1.7 conserved lipoprotein of unknown function compare
PP_1428 -1.7 -2.5 Sigma factor AlgU negative regulatory protein compare
PP_4122 -1.6 -2.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4723 -1.5 -3.1 Carbamoyl-phosphate synthase large chain compare
PP_5329 -1.5 -2.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2322 -1.5 -4.4 Major outer membrane lipoprotein compare
PP_4880 -1.4 -8.3 exoribonuclease R compare
PP_2302 -1.4 -5.2 DNA-binding, ATP-dependent protease compare
PP_4724 -1.4 -1.3 Carbamoyl-phosphate synthase small chain compare
PP_5216 -1.4 -2.3 exopolyphosphatase compare
PP_0846 -1.3 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_1783 -1.3 -2.3 dTDP-glucose pyrophosphorylase compare
PP_4265 -1.3 -1.2 DNA-binding transcriptional dual regulator compare
PP_4126 -1.3 -2.3 NADH-quinone oxidoreductase subunit I compare
PP_5328 -1.3 -1.9 putative phosphate transport system permease protein compare
PP_4891 -1.3 -5.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5327 -1.3 -3.6 putative phosphate ABC transporter, permease subunit compare
PP_4895 -1.3 -2.2 tRNA dimethylallyltransferase compare
PP_2402 -1.3 -2.4 putative Sensor histidine kinase compare
PP_4693 -1.3 -2.7 RNA polymerase-binding transcription factor DksA compare
PP_2121 -1.3 -2.0 putative Lipoprotein compare
PP_5217 -1.2 -7.3 Polyphosphate kinase compare
PP_4999 -1.2 -0.8 dihydroorotase-like protein compare
PP_0339 -1.2 -2.3 Pyruvate dehydrogenase E1 component compare
PP_4964 -1.2 -2.6 D-erythrose 4-phosphate dehydrogenase compare
PP_4120 -1.1 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_4253 -1.1 -3.4 cytochrome c oxidase subunit, cbb3-type compare
PP_4902 -1.1 -2.0 Oligoribonuclease compare
PP_5000 -1.1 -2.0 peptidase component of the ATP-dependent HslVU protease compare
PP_2847 -1.1 -1.8 Urease accessory protein UreJ compare
PP_4726 -1.0 -2.5 Chaperone protein DnaJ compare
PP_3519 -1.0 -1.5 putative Lipoprotein compare
PP_4697 -1.0 -3.3 poly(A) polymerase compare
PP_2337 -1.0 -2.3 aconitate isomerase compare
PP_5052 -1.0 -3.1 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_2144 -1.0 -2.7 Transcriptional regulator, TetR family compare
PP_3365 -1.0 -1.5 Acetolactate synthase compare
PP_1672 -1.0 -4.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1734 -1.0 -2.9 Probable septum site-determining protein MinC compare
PP_1122 -1.0 -1.4 OmpA family protein compare
PP_4129 -0.9 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5350 -0.9 -3.0 Transcriptional regulator, RpiR family compare
PP_4204 -0.9 -2.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4379 -0.9 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1994 -0.9 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_1002 -0.9 -3.1 arginine/ornithine antiporter compare
PP_5001 -0.9 -2.4 protease HslVU, ATPase component compare
PP_4519 -0.9 -6.6 Agglutination protein compare
PP_1733 -0.9 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0401 -0.9 -2.2 Ribosomal RNA small subunit methyltransferase A compare
PP_0393 -0.9 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3672 -0.9 -2.4 conserved protein of unknown function compare
PP_1317 -0.9 -3.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4130 -0.9 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4099 -0.9 -7.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0126 -0.9 -2.5 Cytochrome c4 compare
PP_1164 -0.9 -1.9 Transcriptional regulator, LysR family compare
PP_1142 -0.8 -1.5 conserved protein of unknown function compare
PP_4261 -0.8 -4.0 cation-transporting P-type ATPase compare
PP_3903 -0.8 -1.8 conserved protein of unknown function compare
PP_1986 -0.8 -2.4 3-isopropylmalate dehydratase small subunit compare
PP_4546 -0.8 -2.9 ATP-dependent helicase HrpA compare
PP_4263 -0.8 -2.3 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0167 -0.8 -6.9 Toxin secretion ATP-binding protein compare
PP_0168 -0.8 -7.1 putative surface adhesion protein compare
PP_1319 -0.8 -3.4 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1650 -0.8 -6.5 Sensor protein GacS compare
PP_4700 -0.8 -1.7 pantothenate synthetase compare
PP_4131 -0.8 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_1898 -0.8 -1.5 MotA/TolQ/ExbB proton channel family protein compare
PP_5705 -0.8 -1.7 protein of unknown function compare
PP_5338 -0.8 -2.3 aspartate ammonia-lyase compare
PP_0165 -0.8 -6.0 GGDEF domain protein compare
PP_3726 -0.8 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_5198 -0.8 -2.6 conserved protein of unknown function compare
PP_3241 -0.8 -1.2 conserved exported protein of unknown function compare
PP_4593 -0.8 -1.8 conserved protein of unknown function compare
PP_4124 -0.8 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_0719 -0.7 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4121 -0.7 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PP_5227 -0.7 -3.7 diaminopimelate decarboxylase compare
PP_1322 -0.7 -1.5 putative Lipoprotein compare
PP_4260 -0.7 -3.4 conserved protein of unknown function compare
PP_1198 -0.7 -1.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4262 -0.7 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0888 -0.7 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_1999 -0.7 -1.5 membrane protein required for colicin V production compare
PP_3999 -0.7 -3.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0725 -0.7 -2.4 conserved hypothetical TPR repeat protein compare
PP_2597 -0.7 -2.5 conserved protein of unknown function compare
PP_4560 -0.7 -1.6 putative Ribonuclease BN compare
PP_1598 -0.7 -2.7 regulatory intramembrane protein RIP zinc protease compare
PP_0022 -0.7 -1.0 hypothetical protein compare
PP_4829 -0.7 -1.6 putative precorrin-3B synthase compare
PP_2145 -0.7 -2.0 beta-N-acetylglucosaminidase compare
PP_1692 -0.7 -1.8 conserved protein of unknown function compare
PP_1677 -0.6 -3.1 Adenosyl-cobyric acid synthase compare
PP_4804 -0.6 -1.4 RlpA-like lipoprotein compare
PP_1186 -0.6 -1.1 two component system DNA-binding transcriptional dual regulator compare
PP_0834 -0.6 -1.8 Sec translocation complex subunit YajC compare
PP_4669 -0.6 -2.1 OmpA family protein compare
PP_2077 -0.6 -3.0 diaminopimelate decarboxylase compare
PP_4251 -0.6 -2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_2088 -0.6 -1.5 RNA polymerase sigma factor SigX compare
PP_5202 -0.6 -2.0 putative cell division protein compare
PP_3649 -0.6 -2.4 Transcriptional regulator, GntR family compare
PP_1645 -0.6 -3.2 putative enzyme compare
PP_5337 -0.6 -2.5 LysR family transcriptional regulator compare
PP_5451 -0.6 -2.5 protein of unknown function compare
PP_1268 -0.6 -1.5 putative HtrA suppressor protein sohA compare
PP_0063 -0.6 -2.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1468 -0.6 -1.6 Tyrosine recombinase XerD compare
PP_3946 -0.6 -1.0 HTH-type transcriptional repressor NicR compare
PP_1643 -0.6 -3.0 conserved membrane protein of unknown function compare
PP_5640 -0.6 -1.9 conserved protein of unknown function compare
PP_4975 -0.6 -3.3 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_1048 -0.6 -1.1 putative protein secretion protein for export compare
PP_3449 -0.6 -1.6 conserved exported protein of unknown function compare
PP_t10 -0.6 -1.2 tRNA-Pro compare
PP_0283 -0.6 -2.3 Arginine/ornithine transport ATP-binding protein AotP compare
PP_0406 -0.6 -1.2 Nucleotidyltransferase family protein compare
PP_4268 -0.6 -1.2 nucleoid-associated broad specificity regulator compare
PP_4769 -0.6 -2.2 conserved protein of unknown function compare
PP_1178 -0.6 -2.2 conserved protein of unknown function compare
PP_5533 -0.6 -1.1 conserved protein of unknown function compare
PP_0281 -0.6 -3.3 Amino acid ABC transporter, permease protein compare
PP_0166 -0.6 -4.6 HlyD family secretion protein compare
PP_4892 -0.6 -2.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2475 -0.6 -2.4 Transcriptional regulator, TetR family compare
PP_1494 -0.6 -3.1 Response regulator/GGDEF domain protein compare
PP_5546 -0.6 -1.6 conserved protein of unknown function compare
PP_5093 -0.6 -1.1 twitching motility protein compare
PP_0887 -0.6 -3.1 Sensor histidine kinase compare
PP_5310 -0.5 -3.0 junction-specific ATP-dependent DNA helicase compare
PP_2227 -0.5 -2.2 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_1763 -0.5 -1.9 putative oxidoreductase compare
PP_2499 -0.5 -0.9 conserved protein of unknown function compare
PP_5162 -0.5 -2.8 conserved exported protein of unknown function compare
PP_0832 -0.5 -1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2323 -0.5 -2.8 conserved protein of unknown function compare
PP_0841 -0.5 -1.7 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_2442 -0.5 -1.4 conserved protein of unknown function, DUF480 family compare
PP_4332 -0.5 -2.0 Chemotaxis protein CheW compare
PP_5317 -0.5 -1.7 Probable chorismate pyruvate-lyase compare
PP_5608 -0.5 -2.2 putative exported protein compare
PP_3037 -0.5 -1.8 C4-type zinc finger protein, DksA/TraR family compare
PP_1097 -0.5 -1.0 Methionine--tRNA ligase compare
PP_3245 -0.5 -1.3 conserved protein of unknown function compare
PP_1702 -0.5 -2.2 Recombination-associated protein RdgC compare
PP_t57 -0.5 -1.1 tRNA-Arg compare
PP_5456 -0.5 -1.0 conserved protein of unknown function compare
PP_5575 -0.5 -1.2 conserved protein of unknown function compare
PP_4342 -0.5 -1.8 flagellar synthesis regulator, putative ATPase compare
PP_5248 -0.5 -1.1 putative hydrolase compare
PP_3239 -0.5 -1.5 putative cointegrate resolution protein T Tn4652 compare
PP_3065 -0.5 -3.0 Pyocin R2_PP, tail formation compare
PP_3875 -0.5 -2.0 conserved protein of unknown function compare
PP_4138 -0.5 -2.3 Chromate reductase compare
PP_1629 -0.5 -2.6 Protein RecA compare
PP_0672 -0.5 -4.1 Sensory box protein compare
PP_3792 -0.5 -1.8 conserved protein of unknown function compare
PP_4288 -0.5 -2.1 ureidoglycolate lyase compare
PP_1826 -0.5 -0.8 Hydrolase, isochorismatase family compare
PP_3073 -0.5 -2.5 3-hydroxybutyrate dehydrogenase compare
PP_2106 -0.5 -2.0 putative Ammonium transporter compare
PP_0125 -0.5 -1.9 putative cytochrome c-type protein compare
PP_4517 -0.5 -1.3 conserved protein of unknown function compare
PP_2747 -0.5 -1.1 conserved protein of unknown function compare
PP_0512 -0.5 -1.6 hypothetical protein compare
PP_1490 -0.5 -3.2 Probable biofilm formation methyltransferase WspC compare
PP_1644 -0.5 -1.9 NAD(P)H dehydrogenase (quinone) compare
PP_2000 -0.5 -0.4 amidophosphoribosyl transferase compare
PP_4098 -0.5 -1.4 UvrABC system protein C compare
PP_5298 -0.5 -2.2 putative glutamine amidotransferase compare
PP_2411 -0.5 -2.5 Major facilitator family transporter compare
PP_1576 -0.5 -2.4 putative Immunity protein compare
PP_3328 -0.5 -1.4 putative Ring-cleaving dioxygenase compare
PP_2142 -0.5 -1.4 Cell division inhibitor SulA compare
PP_0775 -0.5 -1.1 conserved protein of unknown function compare
PP_1366 -0.5 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_3353 -0.5 -2.3 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_0697 -0.5 -2.7 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_1716 -0.5 -1.3 Transcriptional regulator, Cro/CI family compare
PP_4482 -0.5 -1.4 Transcriptional regulator, AraC family compare
PP_1764 -0.5 -1.4 Phosphoglycolate phosphatase 2 compare
PP_5270 -0.5 -2.1 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_0781 -0.5 -1.6 conserved protein of unknown function compare
PP_5589 -0.5 -1.8 protein of unknown function containing Rhs repeat-associated core domain compare
PP_4377 -0.5 -1.9 putative Flagellin FlaG compare
PP_1836 -0.5 -1.8 putative metal transporter, ZIP family compare
PP_5230 -0.5 -1.8 Tyrosine recombinase XerC compare
PP_1131 -0.5 -1.7 outer membrane lipoprotein compare
PP_0119 -0.5 -2.0 putative zinc uptake regulation protein ZUR compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in lb outgrowth control experiments

For lb outgrowth control Kanamycin sulfate across organisms