Experiment set34IT018 for Pseudomonas putida KT2440

Compare to:

LB outgrowth control

200 most important genes:

  gene name fitness t score description  
PP_4799 -3.3 -2.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0691 -2.5 -1.7 Glutamate 5-kinase compare
PP_5329 -1.9 -2.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0855 -1.9 -2.9 conserved protein of unknown function compare
PP_2402 -1.8 -2.9 putative Sensor histidine kinase compare
PP_0856 -1.8 -1.2 conserved lipoprotein of unknown function compare
PP_3903 -1.7 -3.1 conserved protein of unknown function compare
PP_4265 -1.7 -1.1 DNA-binding transcriptional dual regulator compare
PP_5095 -1.7 -1.6 pyrroline-5-carboxylate reductase compare
PP_1994 -1.7 -3.3 tRNA pseudouridine (38-40)synthase compare
PP_5328 -1.7 -2.5 putative phosphate transport system permease protein compare
PP_3481 -1.6 -3.2 conserved exported protein of unknown function compare
PP_4129 -1.6 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4723 -1.6 -2.4 Carbamoyl-phosphate synthase large chain compare
PP_0393 -1.6 -2.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4902 -1.6 -2.7 Oligoribonuclease compare
PP_4122 -1.5 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1733 -1.5 -3.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_4880 -1.5 -8.6 exoribonuclease R compare
PP_4126 -1.5 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_0888 -1.5 -2.7 Photosynthetic apparatus regulatory protein RegA compare
PP_2322 -1.4 -4.1 Major outer membrane lipoprotein compare
PP_4098 -1.4 -3.0 UvrABC system protein C compare
PP_0339 -1.4 -2.1 Pyruvate dehydrogenase E1 component compare
PP_5331 -1.4 -3.7 Long-chain acyl-CoA thioester hydrolase compare
PP_4121 -1.4 -4.6 NADH-quinone oxidoreductase subunit C/D compare
PP_4131 -1.4 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_0833 -1.3 -1.7 queuine tRNA-ribosyltransferase compare
PP_4693 -1.3 -2.9 RNA polymerase-binding transcription factor DksA compare
PP_4964 -1.3 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_2378 -1.3 -2.5 Fe/S biogenesis protein NfuA compare
PP_0719 -1.3 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0834 -1.2 -2.2 Sec translocation complex subunit YajC compare
PP_1000 -1.2 -3.2 ornithine carbamoyltransferase, catabolic compare
PP_4999 -1.2 -0.8 dihydroorotase-like protein compare
PP_2309 -1.2 -1.8 conserved protein of unknown function compare
PP_4891 -1.2 -4.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4724 -1.1 -1.1 Carbamoyl-phosphate synthase small chain compare
PP_4560 -1.1 -2.4 putative Ribonuclease BN compare
PP_2337 -1.1 -2.1 aconitate isomerase compare
PP_1783 -1.1 -1.7 dTDP-glucose pyrophosphorylase compare
PP_4895 -1.1 -2.1 tRNA dimethylallyltransferase compare
PP_4804 -1.1 -2.1 RlpA-like lipoprotein compare
PP_2145 -1.1 -1.7 beta-N-acetylglucosaminidase compare
PP_0401 -1.1 -2.8 Ribosomal RNA small subunit methyltransferase A compare
PP_3447 -1.1 -1.7 conserved membrane protein of unknown function compare
PP_3241 -1.1 -1.5 conserved exported protein of unknown function compare
PP_4700 -1.0 -2.1 pantothenate synthetase compare
PP_4251 -1.0 -2.9 cytochrome c oxidase subunit, cbb3-type compare
PP_5217 -1.0 -6.6 Polyphosphate kinase compare
PP_5546 -1.0 -1.9 conserved protein of unknown function compare
PP_1654 -1.0 -1.1 cysteine synthase B compare
PP_2302 -1.0 -3.6 DNA-binding, ATP-dependent protease compare
PP_0848 -1.0 -2.5 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1128 -1.0 -2.4 OmpA family protein compare
PP_1319 -0.9 -3.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1001 -0.9 -2.2 arginine deiminase compare
PP_3876 -0.9 -1.6 conserved protein of unknown function compare
PP_4130 -0.9 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5705 -0.9 -2.2 protein of unknown function compare
PP_1217 -0.9 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4532 -0.9 -2.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4726 -0.9 -1.8 Chaperone protein DnaJ compare
PP_4204 -0.9 -2.7 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1198 -0.9 -1.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2903 -0.9 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0999 -0.9 -2.2 carbamate kinase compare
PP_4375 -0.8 -4.3 flagellar chaperone, inhibits premature FliC assembly compare
PP_1178 -0.8 -2.9 conserved protein of unknown function compare
PP_5045 -0.8 -2.3 tRNA sulfurtransferase compare
PP_5216 -0.8 -1.7 exopolyphosphatase compare
PP_4342 -0.8 -2.0 flagellar synthesis regulator, putative ATPase compare
PP_5327 -0.8 -2.4 putative phosphate ABC transporter, permease subunit compare
PP_4261 -0.8 -3.2 cation-transporting P-type ATPase compare
PP_1494 -0.8 -4.0 Response regulator/GGDEF domain protein compare
PP_4263 -0.8 -2.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4262 -0.8 -1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1186 -0.8 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_4697 -0.8 -2.6 poly(A) polymerase compare
PP_3902 -0.8 -1.8 conserved protein of unknown function compare
PP_4124 -0.8 -2.6 NADH-quinone oxidoreductase subunit G compare
PP_2680 -0.8 -3.0 aldehyde dehydrogenase compare
PP_0119 -0.8 -2.9 putative zinc uptake regulation protein ZUR compare
PP_1650 -0.8 -6.8 Sensor protein GacS compare
PP_5198 -0.8 -2.5 conserved protein of unknown function compare
PP_2336 -0.8 -2.1 aconitate hydratase 1 compare
PP_5317 -0.8 -2.6 Probable chorismate pyruvate-lyase compare
PP_3924 -0.8 -2.3 conserved protein of unknown function compare
PP_4008 -0.7 -3.4 ATP-dependent serine protease compare
PP_5028 -0.7 -2.5 proline iminopeptidase compare
PP_4379 -0.7 -2.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2765 -0.7 -1.5 putative Sulfonate monooxygenase MsuD compare
PP_4120 -0.7 -2.0 NADH-quinone oxidoreductase subunit B compare
PP_0846 -0.7 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_1645 -0.7 -3.1 putative enzyme compare
PP_3637 -0.7 -1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5303 -0.7 -3.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1002 -0.7 -2.3 arginine/ornithine antiporter compare
PP_3081 -0.7 -2.2 conserved protein of unknown function compare
PP_4377 -0.7 -2.2 putative Flagellin FlaG compare
PP_1912 -0.7 -2.2 Phosphate acyltransferase compare
PP_4387 -0.7 -1.9 conserved exported protein of unknown function compare
PP_4519 -0.7 -5.3 Agglutination protein compare
PP_2088 -0.7 -1.7 RNA polymerase sigma factor SigX compare
PP_4099 -0.7 -5.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1898 -0.7 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_2328 -0.7 -2.7 Phosphoadenosine phosphosulfate reductase compare
PP_1317 -0.7 -2.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0166 -0.7 -5.2 HlyD family secretion protein compare
PP_2640 -0.7 -2.3 Acetyltransferase, GNAT family compare
PP_4546 -0.7 -2.4 ATP-dependent helicase HrpA compare
PP_4892 -0.7 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1719 -0.7 -3.6 Tail-specific protease prc compare
PP_0167 -0.6 -5.7 Toxin secretion ATP-binding protein compare
PP_0685 -0.6 -0.8 conserved protein of unknown function compare
PP_5381 -0.6 -2.3 hypothetical protein compare
PP_0781 -0.6 -2.3 conserved protein of unknown function compare
PP_5350 -0.6 -2.1 Transcriptional regulator, RpiR family compare
PP_4909 -0.6 -3.5 phosphoserine phosphatase compare
PP_0168 -0.6 -5.8 putative surface adhesion protein compare
PP_3892 -0.6 -1.3 conserved protein of unknown function compare
PP_5227 -0.6 -3.5 diaminopimelate decarboxylase compare
PP_4250 -0.6 -4.2 cytochrome c oxidase subunit I, cbb3-type compare
PP_2650 -0.6 -2.0 putative 4-hydroxybutyrate dehydrogenase compare
PP_2159 -0.6 -1.7 Copper-binding protein, plastocyanin/azurin family compare
PP_5508 -0.6 -1.0 conserved protein of unknown function compare
PP_5644 -0.6 -1.4 conserved membrane protein of unknown function compare
PP_4994 -0.6 -1.6 conserved protein of unknown function compare
PP_4993 -0.6 -2.9 Glutathione synthetase compare
PP_1045 -0.6 -1.3 Type II secretion pathway protein XcpP compare
PP_0165 -0.6 -4.8 GGDEF domain protein compare
PP_0984 -0.6 -2.2 conserved membrane protein of unknown function compare
PP_1824 -0.6 -0.8 Smr domain protein compare
PP_4362 -0.6 -2.3 conserved protein of unknown function compare
PP_0887 -0.6 -3.8 Sensor histidine kinase compare
PP_1353 -0.6 -1.5 conserved membrane protein of unknown function compare
PP_1632 -0.6 -1.2 conserved protein of unknown function compare
PP_1366 -0.6 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_3487 -0.6 -1.7 conserved exported protein of unknown function compare
PP_3398 -0.6 -1.6 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0949 -0.6 -2.7 putative ATP-binding protein UPF0042 compare
PP_4392 -0.6 -3.6 chemotaxis protein methyltransferase compare
PP_3899 -0.6 -1.6 conserved protein of unknown function, hicB family compare
PP_2568 -0.6 -1.1 Ring-cleaving dioxygenase compare
PP_2429 -0.6 -1.2 putative Membrane protein compare
PP_1987 -0.6 -1.3 Methlytransferase, UbiE/COQ5 family compare
PP_2597 -0.6 -2.5 conserved protein of unknown function compare
PP_0627 -0.6 -1.6 conserved protein of unknown function compare
PP_5706 -0.6 -1.2 Sec translocation complex - SecG subunit compare
PP_1468 -0.6 -1.5 Tyrosine recombinase XerD compare
PP_0725 -0.6 -1.9 conserved hypothetical TPR repeat protein compare
PP_4904 -0.6 -3.5 Flagellar motor rotation protein compare
PP_1099 -0.6 -1.3 Cold shock protein CapB compare
PP_5486 -0.6 -1.3 conserved protein of unknown function compare
PP_5456 -0.6 -0.8 conserved protein of unknown function compare
PP_3819 -0.6 -3.6 glutathione reductase (NADPH) compare
PP_3048 -0.6 -1.7 conserved protein of unknown function compare
PP_5425 -0.6 -2.9 conserved protein of unknown function compare
PP_5748 -0.6 -1.0 cytochrome c heme lyase subunit compare
PP_2323 -0.6 -3.1 conserved protein of unknown function compare
PP_3580 -0.6 -1.4 conserved protein of unknown function compare
PP_t29 -0.6 -1.2 tRNA-Ala compare
PP_4897 -0.6 -2.2 N-acetylmuramoyl-L-alanine amidase compare
PP_5338 -0.6 -1.9 aspartate ammonia-lyase compare
PP_4066 -0.6 -1.6 methylglutaconyl-CoA hydratase compare
PP_5048 -0.6 -2.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5084 -0.6 -3.7 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0001 -0.6 -0.7 probable chromosome-partitioning protein compare
PP_2426 -0.5 -2.5 coniferyl alcohol dehydrogenase compare
PP_4720 -0.5 -1.5 putative RNA binding protein compare
PP_5090 -0.5 -1.2 putative cell division protein compare
PP_0136 -0.5 -2.8 conserved exported protein of unknown function compare
PP_5667 -0.5 -1.3 putative microcin B17-like-processing protein, McbC family compare
PP_5230 -0.5 -1.6 Tyrosine recombinase XerC compare
PP_2514 -0.5 -2.3 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_1122 -0.5 -1.3 OmpA family protein compare
PP_0566 -0.5 -0.9 translation-related factor compare
PP_3043 -0.5 -1.4 conserved protein of unknown function compare
PP_1734 -0.5 -1.6 Probable septum site-determining protein MinC compare
PP_0787 -0.5 -1.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5451 -0.5 -2.3 protein of unknown function compare
PP_1834 -0.5 -2.0 conserved protein of unknown function compare
PP_2375 -0.5 -4.1 cobalamin-dependent methionine synthase compare
PP_4159 -0.5 -1.6 Potassium-transporting ATPase C chain compare
PP_0512 -0.5 -1.7 hypothetical protein compare
PP_0283 -0.5 -2.0 Arginine/ornithine transport ATP-binding protein AotP compare
PP_0672 -0.5 -4.3 Sensory box protein compare
PP_1318 -0.5 -2.6 Cytochrome b compare
PP_3102 -0.5 -2.0 conserved protein of unknown function compare
PP_1752 -0.5 -2.9 conserved protein of unknown function compare
PP_4058 -0.5 -3.6 1,4-alpha-glucan branching enzyme compare
PP_2646 -0.5 -1.5 conserved protein of unknown function compare
PP_0513 -0.5 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1512 -0.5 -1.5 conserved protein of unknown function compare
PP_4848 -0.5 -1.5 Curved DNA-binding protein compare
PP_3762 -0.5 -1.4 Response regulator compare
PP_3455 -0.5 -2.3 Multidrug efflux RND membrane fusion protein compare
PP_1216 -0.5 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4482 -0.5 -1.2 Transcriptional regulator, AraC family compare
PP_2442 -0.5 -1.3 conserved protein of unknown function, DUF480 family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in lb outgrowth control experiments

For lb outgrowth control Kanamycin sulfate across organisms