Experiment set34IT018 for Pseudomonas putida KT2440

Compare to:

LB outgrowth control

200 most detrimental genes:

  gene name fitness t score description  
PP_0164 +1.6 8.4 conserved protein of unknown function compare
PP_1655 +1.4 7.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4561 +1.0 1.5 stress response protein compare
PP_4271 +0.9 2.1 conserved protein of unknown function compare
PP_4797 +0.9 1.8 conserved protein of unknown function compare
PP_1054 +0.8 2.2 Type II secretion pathway protein XcpZ compare
PP_5359 +0.8 3.3 CobW/P47K family protein compare
PP_3519 +0.8 1.9 putative Lipoprotein compare
PP_4504 +0.7 1.4 conserved exported protein of unknown function compare
PP_3840 +0.7 1.7 conserved protein of unknown function compare
PP_1716 +0.7 1.6 Transcriptional regulator, Cro/CI family compare
PP_4094 +0.7 1.7 conserved protein of unknown function compare
PP_5453 +0.6 1.8 conserved protein of unknown function compare
PP_3460 +0.6 2.2 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_3401 +0.6 2.7 conserved protein of unknown function compare
PP_0092 +0.6 2.5 putative lipoprotein compare
PP_0195 +0.6 2.2 conserved protein of unknown function compare
PP_0232 +0.6 1.4 ATP-binding taurine transporter subunit compare
PP_3806 +0.6 2.4 Hydrolase, isochorismatase family compare
PP_2720 +0.6 1.4 conserved protein of unknown function compare
PP_2705 +0.6 1.4 conserved protein of unknown function compare
PP_2433 +0.6 2.0 conserved protein of unknown function compare
PP_4355 +0.6 1.7 flagellar export apparatus subunit compare
PP_0575 +0.6 2.9 conserved membrane protein of unknown function compare
PP_4247 +0.6 1.3 Exonuclease compare
PP_1656 +0.6 2.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_4966 +0.6 2.0 transcriptional regulator of methionine metabolism compare
PP_2313 +0.5 1.4 conserved membrane protein of unknown function compare
PP_5022 +0.5 1.1 Glutamine transport ATP-binding protein GlnQ compare
PP_3392 +0.5 1.4 conserved protein of unknown function compare
PP_1344 +0.5 1.3 conserved protein of unknown function compare
PP_0959 +0.5 1.3 phospholipid ABC transporter compare
PP_2121 +0.5 0.8 putative Lipoprotein compare
PP_0735 +0.5 1.2 molybdopterin-synthase adenylyltransferase compare
PP_2441 +0.5 1.8 conserved protein of unknown function compare
PP_2580 +0.5 2.2 conserved protein of unknown function compare
PP_3883 +0.5 1.9 putative Phage holin compare
PP_5610 +0.5 1.6 protein of unknown function compare
PP_0022 +0.5 1.0 hypothetical protein compare
PP_0398 +0.5 2.3 Thiosulfate sulfurtransferase GlpE compare
PP_5557 +0.5 1.6 protein of unknown function compare
PP_3332 +0.5 2.2 putative cytochrome c-type protein compare
PP_1690 +0.5 2.2 conserved protein of unknown function compare
PP_5554 +0.5 2.5 protein of unknown function compare
PP_0319 +0.5 1.0 conserved protein of unknown function compare
PP_0948 +0.5 1.1 Phosphocarrier protein HPr compare
PP_2681 +0.5 1.0 coenzyme PQQ synthesis protein D compare
PP_1268 +0.5 1.7 putative HtrA suppressor protein sohA compare
PP_5267 +0.5 1.4 putative cytochrome c5 compare
PP_3341 +0.5 1.8 nickel-responsive regulator compare
PP_4196 +0.5 1.6 conserved exported protein of unknown function compare
PP_5324 +0.5 1.2 Response regulator compare
PP_0653 +0.5 1.1 conserved protein of unknown function compare
PP_2594 +0.5 3.0 Ferric anguibactin transport system permease protein FatD compare
PP_2503 +0.5 1.6 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_1812 +0.5 1.6 conserved protein of unknown function compare
PP_3190 +0.5 1.9 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_3906 +0.5 2.0 conserved protein of unknown function compare
PP_0306 +0.5 1.0 conserved protein of unknown function compare
PP_0254 +0.5 1.7 conserved protein of unknown function compare
PP_0962 +0.5 1.3 toluene-tolerance protein compare
PP_1799 +0.5 3.7 GDP-mannose 4,6-dehydratase compare
PP_4005 +0.4 2.0 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_4426 +0.4 1.7 Amino acid ABC transporter, permease protein compare
PP_5551 +0.4 2.5 conserved protein of unknown function compare
PP_1164 +0.4 1.5 Transcriptional regulator, LysR family compare
PP_2510 +0.4 1.0 conserved protein of unknown function compare
PP_3198 +0.4 1.3 Ferredoxin, 2Fe-2S compare
PP_0276 +0.4 1.0 Transcriptional regulator, Cro/CI family compare
PP_3810 +0.4 1.5 conserved protein of unknown function compare
PP_1021 +0.4 2.5 DNA-binding transcriptional regulator compare
PP_4871 +0.4 2.1 putative lysine decarboxylase family protein compare
PP_4156 +0.4 1.2 Transcriptional regulator, LysR family compare
PP_2414 +0.4 1.3 conserved exported protein of unknown function compare
PP_1776 +0.4 3.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4940 +0.4 3.1 Putative glycosyltransferase compare
PP_2795 +0.4 2.0 AMP-binding domain protein compare
PP_1800 +0.4 3.1 Oxidoreductase Rmd compare
PP_1605 +0.4 1.3 Ribonuclease HII compare
PP_5393 +0.4 0.6 putative metal-binding chaperone compare
PP_5145 +0.4 3.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4529 +0.4 1.1 conserved protein of unknown function compare
PP_0275 +0.4 2.4 conserved protein of unknown function compare
PP_4943 +0.4 0.9 putative Glycosyl transferase compare
PP_2592 +0.4 1.7 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_1493 +0.4 1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2987 +0.4 1.5 conserved protein of unknown function compare
PP_3978 +0.4 1.8 conserved protein of unknown function compare
PP_0824 +0.4 2.1 phosphonate transport system-binding protein compare
PP_2898 +0.4 1.3 conserved exported protein of unknown function compare
PP_1779 +0.4 2.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3136 +0.4 1.9 putative O-acetyltransferase compare
PP_5725 +0.4 1.5 protein of unknown function compare
PP_4528 +0.4 1.1 conserved protein of unknown function compare
PP_3821 +0.4 2.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2046 +0.4 1.3 Transcriptional regulator, LysR family compare
PP_1935 +0.4 1.0 Transcriptional regulator, Cro/CI family compare
PP_3035 +0.4 1.2 conserved protein of unknown function compare
PP_3476 +0.4 1.8 Type II secretion system protein G compare
PP_1805 +0.4 3.3 Polysaccharide biosynthesis protein compare
PP_2280 +0.4 1.2 conserved protein of unknown function compare
PP_5586 +0.4 1.7 exported protein of unknown function compare
PP_0337 +0.4 2.8 Sensory box protein compare
PP_0805 +0.4 2.7 Outer membrane efflux protein compare
PP_2960 +0.4 1.2 transcriptional regulator, AraC family compare
PP_1801 +0.4 2.7 Glycosyl transferase WbpY compare
PP_2740 +0.4 0.6 Transcriptional regulator, MerR family compare
PP_0683 +0.4 1.5 conserved protein of unknown function compare
PP_5717 +0.4 1.2 conserved protein of unknown function compare
PP_0803 +0.4 2.1 Protein secretion ABC efflux system, membrane fusion protein compare
PP_5471 +0.4 1.0 putative response regulator receiver protein compare
PP_4340 +0.4 1.6 response regulator for chemotactic signal transduction compare
PP_2631 +0.4 1.0 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5519 +0.4 0.8 conserved protein of unknown function of phage origin compare
PP_0914 +0.4 2.8 GGDEF domain protein compare
PP_0800 +0.4 2.4 conserved protein of unknown function compare
PP_0804 +0.4 2.6 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_2899 +0.4 0.9 conserved exported protein of unknown function compare
PP_3825 +0.4 1.8 conserved protein of unknown function compare
PP_0893 +0.3 0.9 ThiJ/PfpI family protein compare
PP_1979 +0.3 0.9 putative Hydrolase compare
PP_4226 +0.3 1.3 conserved protein of unknown function compare
PP_5212 +0.3 2.2 Oxidoreductase, iron-sulfur-binding compare
PP_4173 +0.3 2.8 Sensor histidine kinase/response regulator compare
PP_2504 +0.3 1.3 putative tautomerase K2 compare
PP_0064 +0.3 1.6 conserved protein of unknown function compare
PP_1390 +0.3 1.5 conserved exported protein of unknown function compare
PP_0775 +0.3 1.0 conserved protein of unknown function compare
PP_3705 +0.3 1.9 conserved membrane protein of unknown function compare
PP_2972 +0.3 1.0 conserved protein of unknown function compare
PP_5083 +0.3 1.1 putative Type IV pili biogenesis protein PilM compare
PP_4631 +0.3 1.1 conserved protein of unknown function compare
PP_2555 +0.3 1.6 conserved protein of unknown function compare
PP_1269 +0.3 0.6 Universal stress protein family compare
PP_3866 +0.3 1.1 conserved protein of unknown function compare
PP_3988 +0.3 2.3 conserved protein of unknown function compare
PP_1012 +0.3 1.6 DNA-binding response regulator compare
PP_3792 +0.3 1.5 conserved protein of unknown function compare
PP_4225 +0.3 1.8 two component system DNA-binding transcriptional activator QseB compare
PP_4356 +0.3 1.1 Flagellar protein FliO compare
PP_2678 +0.3 1.8 putative Hydrolase compare
PP_5191 +0.3 0.9 conserved exported protein of unknown function compare
PP_5298 +0.3 1.5 putative glutamine amidotransferase compare
PP_2721 +0.3 1.5 conserved membrane protein of unknown function compare
PP_t12 +0.3 0.5 tRNA-Thr compare
PP_5447 +0.3 1.8 conserved membrane protein of unknown function compare
PP_5495 +0.3 1.0 protein of unknown function compare
PP_2118 +0.3 1.1 conserved protein of unknown function compare
PP_4916 +0.3 1.3 putative esterase compare
PP_3693 +0.3 1.4 putative Transcriptional regulator MvaT, P16 subunit compare
PP_1770 +0.3 1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5742 +0.3 1.4 putative membrane protein of unknown function compare
PP_4358 +0.3 1.9 flagellar synthesis, switching and energizing component compare
PP_2820 +0.3 1.0 HTH-type transcriptional regulator nfxB compare
PP_1438 +0.3 1.8 response regulator compare
PP_0951 +0.3 2.0 Ribosome hibernation promoting factor compare
PP_2697 +0.3 1.3 putative oxidoreductase containing a flavin reductase domain compare
PP_3018 +0.3 1.3 conserved protein of unknown function compare
PP_3964 +0.3 1.1 transposase compare
PP_4217 +0.3 2.8 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1455 +0.3 1.0 conserved protein of unknown function compare
PP_3770 +0.3 0.7 conserved protein of unknown function compare
PP_3915 +0.3 1.1 conserved protein of unknown function compare
PP_5626 +0.3 1.7 putative phage repressor-like, DNA-binding domain compare
PP_5160 +0.3 2.1 conserved exported protein of unknown function compare
PP_3577 +0.3 1.4 RNA polymerase, sigma 19 factor compare
PP_1232 +0.3 1.7 conserved exported protein of unknown function compare
PP_3709 +0.3 1.6 conserved protein of unknown function compare
PP_1071 +0.3 1.5 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_3232 +0.3 1.5 Acetyltransferase, GNAT family compare
PP_5467 +0.3 1.8 conserved exported protein of unknown function compare
PP_1561 +0.3 1.5 putative Phage holin compare
PP_1802 +0.3 2.4 glycosyl transferase compare
PP_5423 +0.3 0.9 conserved membrane protein of unknown function compare
PP_4172 +0.3 2.2 conserved exported protein of unknown function compare
PP_5537 +0.3 0.9 conserved membrane protein of unknown function compare
PP_2248 +0.3 2.0 putative transporter compare
PP_5390 +0.3 1.0 conserved hypothetical protein compare
PP_0218 +0.3 2.1 Sensory box protein compare
PP_3000 +0.3 1.2 MaoC domain protein compare
PP_1466 +0.3 1.2 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_2222 +0.3 1.0 conserved protein of unknown function compare
PP_1985 +0.3 1.1 3-isopropylmalate dehydratase large subunit compare
PP_4750 +0.3 2.0 Amino acid ABC transporter, permease protein compare
PP_2124 +0.3 1.4 putative Glycosyl transferase compare
PP_2950 +0.3 1.2 conserved protein of unknown function compare
PP_4874 +0.3 0.5 50S ribosomal protein L9 compare
PP_2016 +0.3 1.3 conserved protein of unknown function compare
PP_2793 +0.3 0.8 Acyl-CoA dehydrogenase family protein compare
PP_2801 +0.3 1.8 gamma-aminobutyraldehyde dehydrogenase compare
PP_2511 +0.3 1.1 conserved protein of unknown function compare
PP_5701 +0.3 0.7 conserved protein of unknown function compare
PP_t49 +0.3 1.4 tRNA-Met compare
PP_0792 +0.3 1.8 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_4559 +0.3 1.5 peptide deformylase compare
PP_2512 +0.3 1.9 GTP cyclohydrolase 1 compare
PP_4499 +0.3 1.2 putative maturation enzyme compare
PP_3474 +0.3 1.6 putative Curli fiber protein CsgE compare
PP_0278 +0.3 1.3 conserved protein of unknown function compare
PP_1346 +0.3 1.5 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in lb outgrowth control experiments

For lb outgrowth control Kanamycin sulfate across organisms