Experiment set34IT017 for Pseudomonas putida KT2440

Compare to:

LB outgrowth control

200 most detrimental genes:

  gene name fitness t score description  
PP_4561 +1.7 3.0 stress response protein compare
PP_1655 +1.2 5.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4355 +1.0 2.4 flagellar export apparatus subunit compare
PP_5007 +0.8 2.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2615 +0.8 2.4 hemolysin-coregulated protein compare
PP_3505 +0.7 1.3 conserved protein of unknown function compare
PP_4828 +0.7 1.6 Precorrin-8X methylmutase compare
PP_3519 +0.7 1.6 putative Lipoprotein compare
PP_1774 +0.7 1.9 conserved exported protein of unknown function compare
PP_1935 +0.7 2.5 Transcriptional regulator, Cro/CI family compare
PP_5008 +0.7 1.2 Poly granule-associated protein compare
PP_2429 +0.6 1.0 putative Membrane protein compare
PP_0610 +0.6 1.5 conserved exported protein of unknown function compare
PP_0711 +0.6 2.7 putative hydrolase compare
PP_3234 +0.6 2.8 Heat shock protein, HSP20 family compare
PP_2280 +0.6 2.0 conserved protein of unknown function compare
PP_4943 +0.6 1.3 putative Glycosyl transferase compare
PP_1656 +0.6 3.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_1493 +0.6 2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5569 +0.5 2.4 protein of unknown function of phage origin compare
PP_5561 +0.5 3.0 conserved protein of unknown function compare
PP_0948 +0.5 1.3 Phosphocarrier protein HPr compare
PP_5447 +0.5 3.3 conserved membrane protein of unknown function compare
PP_0593 +0.5 0.9 putative ribosome-binding factor compare
PP_1776 +0.5 4.5 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4528 +0.5 1.6 conserved protein of unknown function compare
PP_3902 +0.5 1.6 conserved protein of unknown function compare
PP_t49 +0.5 1.7 tRNA-Met compare
PP_2400 +0.5 2.9 conserved protein of unknown function compare
PP_2900 +0.5 1.7 conserved protein of unknown function compare
PP_2105 +0.5 2.4 conserved protein of unknown function compare
PP_2794 +0.5 1.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1096 +0.5 1.8 putative electron transport complex protein compare
PP_0240 +0.5 1.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_1062 +0.5 1.4 MutT/nudix family protein compare
PP_4966 +0.5 1.6 transcriptional regulator of methionine metabolism compare
PP_4930 +0.5 2.2 putative small multidrug resistance protein compare
PP_5422 +0.5 2.0 hypothetical protein compare
PP_2196 +0.5 1.6 agmatinase compare
PP_1829 +0.4 0.9 Hydrolase, alpha/beta fold family compare
PP_5017 +0.4 0.9 Sec-independent protein translocase protein TatB compare
PP_0164 +0.4 2.6 conserved protein of unknown function compare
PP_1546 +0.4 2.2 conserved protein of unknown function compare
PP_3121 +0.4 1.5 transcriptional regulator, LysR family compare
PP_5205 +0.4 3.0 conserved protein of unknown function compare
PP_5621 +0.4 1.4 protein of unknown function compare
PP_4009 +0.4 2.4 ATP-dependent Clp protease adapter protein ClpS compare
PP_0425 +0.4 1.7 conserved protein of unknown function compare
PP_1605 +0.4 1.3 Ribonuclease HII compare
PP_1099 +0.4 1.1 Cold shock protein CapB compare
PP_0630 +0.4 0.9 DNA gyrase inhibitor YacG compare
PP_5568 +0.4 2.3 conserved membrane protein of unknown function compare
PP_0575 +0.4 2.3 conserved membrane protein of unknown function compare
PP_0273 +0.4 1.7 conserved protein of unknown function compare
PP_3563 +0.4 2.0 conserved exported protein of unknown function compare
PP_4925 +0.4 1.7 conserved protein of unknown function compare
PP_5571 +0.4 1.0 conserved protein of unknown function compare
PP_1235 +0.4 2.5 AhpC/TSA family protein compare
PP_3401 +0.4 1.9 conserved protein of unknown function compare
PP_0805 +0.4 3.3 Outer membrane efflux protein compare
PP_3808 +0.4 1.1 Antibiotic synthesis protein MbtH compare
PP_5449 +0.4 2.3 conserved exported protein of unknown function compare
PP_4296 +0.4 0.9 conserved exported protein of unknown function compare
PP_5054 +0.4 1.2 glutaredoxin 3 compare
PP_4365 +0.4 2.1 Flagellar protein FliJ compare
PP_3136 +0.4 2.1 putative O-acetyltransferase compare
PP_4406 +0.4 1.4 conserved protein of unknown function compare
PP_4268 +0.4 0.9 nucleoid-associated broad specificity regulator compare
PP_3061 +0.4 1.9 conserved protein of unknown function compare
PP_3899 +0.4 1.4 conserved protein of unknown function, hicB family compare
PP_1778 +0.4 2.3 Lipopolysaccharide ABC export system, permease protein compare
PP_5674 +0.4 1.4 conserved protein of unknown function compare
PP_1805 +0.4 3.4 Polysaccharide biosynthesis protein compare
PP_5640 +0.4 1.6 conserved protein of unknown function compare
PP_5145 +0.4 3.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0827 +0.4 1.4 putative phosphonate transport system permease protein PtxC compare
PP_4940 +0.4 2.9 Putative glycosyltransferase compare
PP_2820 +0.4 0.9 HTH-type transcriptional regulator nfxB compare
PP_0768 +0.4 2.2 Response regulator/TPR domain protein compare
PP_1801 +0.4 2.8 Glycosyl transferase WbpY compare
PP_3034 +0.4 1.3 putative Regulator protein compare
PP_4545 +0.4 1.7 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_3883 +0.4 1.0 putative Phage holin compare
PP_0574 +0.4 3.1 DNA-binding response regulator, LuxR family compare
PP_3967 +0.4 1.6 MutT/nudix family protein compare
PP_4391 +0.4 2.1 flagellar basal-body rod protein FlgB compare
PP_4172 +0.4 2.5 conserved exported protein of unknown function compare
PP_3398 +0.4 1.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1658 +0.4 1.7 conserved protein of unknown function compare
PP_1415 +0.4 1.5 putative membrane associated enzyme subunit compare
PP_0081 +0.4 2.0 conserved protein of unknown function compare
PP_4859 +0.4 1.8 Transcriptional regulator, TetR family compare
PP_2854 +0.4 1.4 conserved exported protein of unknown function compare
PP_1176 +0.4 1.0 conserved protein of unknown function compare
PP_1766 +0.4 1.9 methylthioribose-1-phosphate isomerase compare
PP_0306 +0.4 0.9 conserved protein of unknown function compare
PP_1310 +0.4 1.3 conserved hypothetical protein compare
PP_4171 +0.3 3.3 conserved exported protein of unknown function compare
PP_0831 +0.3 2.0 hypothetical protein compare
PP_1026 +0.3 1.3 Peptidase, M23/M37 family compare
PP_4517 +0.3 0.7 conserved protein of unknown function compare
PP_0151 +0.3 1.7 conserved exported protein of unknown function compare
PP_0377 +0.3 1.0 coenzyme PQQ synthesis protein D compare
PP_2547 +0.3 1.1 Transcriptional regulator, LysR family compare
PP_5661 +0.3 0.9 putative lipoprotein compare
PP_1441 +0.3 1.7 tRNA (cmo5U34)-methyltransferase compare
PP_2416 +0.3 0.7 putative Iron ABC transporter, ATP-binding protein compare
PP_2360 +0.3 1.7 putative type 1 pili subunit CsuA/B protein compare
PP_2634 +0.3 1.8 putative Cellulose synthase compare
PP_1454 +0.3 1.2 conserved protein of unknown function compare
PP_2396 +0.3 1.5 conserved exported protein of unknown function compare
PP_1779 +0.3 2.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4369 +0.3 2.5 Flagellar M-ring protein compare
PP_0087 +0.3 1.3 conserved exported protein of unknown function compare
PP_5565 +0.3 1.5 conserved protein of unknown function compare
PP_4198 +0.3 1.7 OmpA family protein compare
PP_2592 +0.3 1.5 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_0217 +0.3 2.3 delta-9 fatty acid desaturase compare
PP_5717 +0.3 0.8 conserved protein of unknown function compare
PP_0735 +0.3 0.5 molybdopterin-synthase adenylyltransferase compare
PP_2310 +0.3 2.2 Methyl-accepting chemotaxis transducer compare
PP_1985 +0.3 1.5 3-isopropylmalate dehydratase large subunit compare
PP_5093 +0.3 0.8 twitching motility protein compare
PP_2387 +0.3 1.1 conserved protein of unknown function compare
PP_4354 +0.3 1.1 flagellar export apparatus subunit compare
PP_5022 +0.3 0.9 Glutamine transport ATP-binding protein GlnQ compare
PP_0326 +0.3 1.4 sarcosine oxidase subunit gamma compare
PP_2714 +0.3 1.9 Sensor histidine kinase compare
PP_4353 +0.3 1.9 Flagellar biosynthetic protein fliR compare
PP_4367 +0.3 1.7 Flagellar assembly protein FliH compare
PP_4217 +0.3 3.0 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0337 +0.3 2.6 Sensory box protein compare
PP_1780 +0.3 2.9 putative mannosyltransferase compare
PP_2222 +0.3 1.6 conserved protein of unknown function compare
PP_2171 +0.3 1.3 Transporter, LysE family compare
PP_5558 +0.3 1.3 putative transcriptional xre family of phage origin compare
PP_3884 +0.3 1.4 Phage holin, lambda family compare
PP_3451 +0.3 1.8 conserved exported protein of unknown function compare
PP_2575 +0.3 0.9 conserved exported protein of unknown function compare
PP_5253 +0.3 1.0 Arylesterase compare
PP_0903 +0.3 1.6 conserved protein of unknown function compare
PP_2624 +0.3 1.5 conserved protein of unknown function compare
PP_4831 +0.3 1.7 putative cobalt-precorrin-6A synthase compare
PP_5161 +0.3 1.9 putative lysophospholipase compare
PP_1140 +0.3 2.5 branched chain amino acid transporter - permease subunit compare
PP_0536 +0.3 1.2 conserved protein of unknown function compare
PP_3040 +0.3 1.4 Pyocin R2_PP, holin compare
PP_0893 +0.3 1.2 ThiJ/PfpI family protein compare
PP_4045 +0.3 1.1 conserved protein of unknown function compare
PP_2189 +0.3 0.9 conserved protein of unknown function compare
PP_4311 +0.3 1.8 putative D-amino acid dehydrogenase 2 small subunit compare
PP_2073 +0.3 0.8 Acetyltransferase, GNAT family compare
PP_5155 +0.3 1.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5636 +0.3 1.6 protein of unknown function compare
PP_2277 +0.3 1.5 conserved protein of unknown function compare
PP_5619 +0.3 1.1 protein of unknown function compare
PP_3818 +0.3 2.0 Periplamic phosphate-binding protein compare
PP_4845 +0.3 1.3 putative Urea ABC transporter, ATP-binding protein compare
PP_0914 +0.3 2.2 GGDEF domain protein compare
PP_3075 +0.3 1.2 putative transcriptional regulator compare
PP_4939 +0.3 1.7 conserved protein of unknown function compare
PP_2138 +0.3 1.6 conserved protein of unknown function compare
PP_4385 +0.3 1.7 flagellar basal-body rod protein FlgG compare
PP_3840 +0.3 0.6 conserved protein of unknown function compare
PP_4396 +0.3 1.0 conserved protein of unknown function compare
PP_2717 +0.3 1.3 arsenite/antimonite transporter compare
PP_1233 +0.3 1.5 sulfurtransferase compare
PP_2626 +0.3 1.9 conserved protein of unknown function compare
PP_0792 +0.3 1.6 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_0048 +0.3 0.7 conserved protein of unknown function compare
PP_1368 +0.3 1.2 putative membrane protein containing a glycosyltransferase domain compare
PP_5605 +0.3 1.6 conserved exported protein of unknown function compare
PP_2848 +0.3 1.1 urease accessory protein compare
PP_3932 +0.3 1.9 Diguanylate cyclase compare
PP_4572 +0.3 2.0 conserved exported protein of unknown function compare
PP_4317 +0.3 0.7 conserved protein of unknown function compare
PP_1459 +0.3 1.6 CBS domain protein compare
PP_1876 +0.3 0.9 putative ATP/GTP-binding protein of the AAA+ family compare
PP_0508 +0.3 1.1 conserved exported protein of unknown function compare
PP_1697 +0.3 1.1 transcriptional regulator, GntR family compare
PP_2738 +0.3 1.4 putative Transcriptional regulator compare
PP_3806 +0.3 1.1 Hydrolase, isochorismatase family compare
PP_5491 +0.3 1.0 conserved protein of unknown function with SEC-C motif domain compare
PP_4938 +0.3 2.0 putative Glycosyl transferase compare
PP_4629 +0.3 1.4 Sensory box protein compare
PP_4598 +0.3 1.7 conserved membrane protein of unknown function compare
PP_1054 +0.3 0.4 Type II secretion pathway protein XcpZ compare
PP_3230 +0.3 1.4 Phosphoribosyl transferase domain protein compare
PP_0293 +0.3 0.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5583 +0.3 0.9 conserved protein of unknown function compare
PP_0960 +0.3 1.4 phospholipid ABC transporter binding protein compare
PP_4497 +0.3 1.8 conserved protein of unknown function compare
PP_3900 +0.3 1.4 hypothetical protein compare
PP_4890 +0.3 1.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_4358 +0.3 1.7 flagellar synthesis, switching and energizing component compare
PP_0852 +0.3 1.4 Transcriptional regulator, Cro/CI family compare
PP_3702 +0.3 1.4 conserved protein of unknown function compare
PP_0361 +0.3 1.2 putative Competence protein ComF compare
PP_2107 +0.3 0.7 conserved protein of unknown function compare
PP_2459 +0.3 1.0 ribose pyranase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in lb outgrowth control experiments

For lb outgrowth control Kanamycin sulfate across organisms