Experiment set33S273 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_28050 -5.0 -4.7 hypothetical protein compare
PS417_00385 -5.0 -2.4 Fur family transcriptional regulator compare
PS417_26850 -4.1 -1.9 twin-arginine translocation pathway signal protein compare
PS417_23545 -4.0 -2.7 gamma-glutamyl kinase compare
PS417_23950 -3.8 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_08410 -3.7 -2.2 hypothetical protein compare
PS417_27300 -3.7 -1.7 cell division protein ZapA compare
PS417_03385 -3.6 -2.4 flavin reductase compare
PS417_20855 -3.3 -2.2 hypothetical protein compare
PS417_08155 -3.3 -2.3 integration host factor subunit beta compare
PS417_27870 -3.2 -2.2 ATP-dependent DNA helicase RecG compare
PS417_27135 -3.2 -1.5 glutamine synthetase compare
PS417_02270 -2.9 -3.4 carbamoyltransferase compare
PS417_11400 -2.8 -2.7 phosphoglycerate mutase compare
PS417_16555 -2.8 -1.9 cupin compare
PS417_08230 -2.8 -2.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08335 -2.8 -2.5 hypothetical protein compare
PS417_22450 -2.7 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_00345 -2.7 -2.6 copper-binding protein compare
PS417_06500 -2.6 -2.1 hypothetical protein compare
PS417_06680 -2.5 -3.5 nuclease PIN compare
PS417_17215 -2.5 -3.0 peptidylprolyl isomerase compare
PS417_27795 -2.5 -1.2 orotate phosphoribosyltransferase compare
PS417_27815 -2.4 -1.4 hypothetical protein compare
PS417_23370 -2.4 -3.9 protoheme IX farnesyltransferase compare
PS417_07470 -2.3 -1.4 hypothetical protein compare
PS417_04385 -2.3 -1.6 organic solvent ABC transporter substrate-binding protein compare
PS417_22840 -2.1 -1.4 tRNA-Met compare
PS417_17645 -2.0 -1.9 RND transporter compare
PS417_23380 -2.0 -2.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_18635 -2.0 -2.8 4-hydroxybenzoyl-CoA thioesterase compare
PS417_21625 -2.0 -1.3 DNA-binding protein compare
PS417_22375 -2.0 -1.3 cold-shock protein compare
PS417_21000 -2.0 -1.2 CrfX protein compare
PS417_02720 -1.9 -1.3 TetR family transcriptional regulator compare
PS417_06620 -1.9 -2.2 hypothetical protein compare
PS417_00510 -1.8 -1.4 membrane protein compare
PS417_25270 -1.8 -2.6 NrdR family transcriptional regulator compare
PS417_10645 -1.8 -5.1 magnesium ABC transporter ATPase compare
PS417_10265 -1.8 -1.9 peptidase compare
PS417_18310 -1.8 -1.2 hypothetical protein compare
PS417_22935 -1.8 -2.9 hypothetical protein compare
PS417_18545 -1.7 -2.5 cell division protein compare
PS417_24605 -1.7 -2.1 thiamine-phosphate pyrophosphorylase compare
PS417_23375 -1.7 -1.9 cytochrome C oxidase compare
PS417_22205 -1.7 -5.5 potassium transporter TrkH compare
PS417_09150 -1.6 -2.7 energy transducer TonB compare
PS417_02880 -1.6 -1.5 copper chaperone compare
PS417_04410 -1.6 -1.7 hypothetical protein compare
PS417_18020 -1.6 -2.3 hypothetical protein compare
PS417_06895 -1.6 -2.8 DNA-binding protein compare
PS417_24600 -1.6 -4.8 hydrogenase compare
PS417_01575 -1.6 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_06685 -1.6 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_26605 -1.6 -1.2 malonate decarboxylase subunit beta compare
PS417_26730 -1.5 -1.0 pyrroline-5-carboxylate reductase compare
PS417_01270 -1.5 -2.0 iron ABC transporter substrate-binding protein compare
PS417_23385 -1.5 -4.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_13185 -1.5 -1.6 RND transporter compare
PS417_22445 -1.5 -2.0 ATP-dependent DNA helicase RuvB compare
PS417_27425 -1.4 -4.4 exopolyphosphatase compare
PS417_22690 -1.4 -2.6 phosphogluconate dehydratase compare
PS417_23915 -1.4 -2.5 pantoate--beta-alanine ligase compare
PS417_00080 -1.4 -4.4 potassium transporter peripheral membrane component compare
PS417_07170 -1.4 -3.0 hypothetical protein compare
PS417_11615 -1.4 -1.4 urea ABC transporter ATP-binding protein compare
PS417_24135 -1.4 -2.0 hypothetical protein compare
PS417_19605 -1.4 -1.4 hypothetical protein compare
PS417_20340 -1.4 -1.5 hypothetical protein compare
PS417_06200 -1.4 -3.7 protein-PII uridylyltransferase compare
PS417_21655 -1.4 -1.3 aspartate kinase compare
PS417_01185 -1.4 -3.7 ribosomal protein S6 modification protein compare
PS417_06375 -1.4 -0.6 deoxycytidine triphosphate deaminase compare
PS417_19650 -1.4 -3.3 chemotaxis protein CheW compare
PS417_19275 -1.3 -1.0 hypothetical protein compare
PS417_24935 -1.3 -1.1 hypothetical protein compare
PS417_15875 -1.3 -1.4 LuxR family transcriptional regulator compare
PS417_25390 -1.3 -2.8 MFS transporter compare
PS417_07575 -1.3 -2.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_27605 -1.3 -4.1 hypothetical protein compare
PS417_12355 -1.3 -1.6 magnesium chelatase compare
PS417_00920 -1.3 -3.5 diguanylate cyclase compare
PS417_02415 -1.3 -1.9 phosphoserine phosphatase compare
PS417_22620 -1.3 -3.0 pyruvate kinase compare
PS417_23390 -1.3 -3.4 ubiquinol oxidase subunit II compare
PS417_19335 -1.3 -1.4 isochorismatase compare
PS417_03100 -1.3 -1.1 pilus assembly protein compare
PS417_03560 -1.3 -1.2 GTP-binding protein compare
PS417_26775 -1.3 -6.3 thiazole synthase compare
PS417_03145 -1.3 -2.1 acetyl-CoA acetyltransferase compare
PS417_07615 -1.3 -3.3 TetR family transcriptional regulator compare
PS417_18355 -1.3 -6.1 DNA-binding protein compare
PS417_24710 -1.3 -4.5 lipoprotein compare
PS417_04440 -1.3 -1.2 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_08365 -1.3 -1.0 hypothetical protein compare
PS417_27705 -1.2 -1.4 amino acid dehydrogenase compare
PS417_27245 -1.2 -1.2 aminotransferase DegT compare
PS417_10425 -1.2 -1.4 hypothetical protein compare
PS417_23615 -1.2 -1.7 sulfate transporter compare
PS417_04595 -1.2 -1.5 cell division protein MraZ compare
PS417_17680 -1.2 -1.8 ABC transporter compare
PS417_13510 -1.2 -1.0 polyketide cyclase compare
PS417_01300 -1.2 -2.9 thioesterase compare
PS417_09235 -1.2 -1.0 molecular chaperone compare
PS417_01945 -1.2 -2.0 nuclease compare
PS417_17070 -1.2 -1.5 RNA polymerase subunit sigma-24 compare
PS417_04585 -1.2 -0.7 hypothetical protein compare
PS417_21480 -1.1 -1.0 23S rRNA pseudouridylate synthase compare
PS417_16885 -1.1 -2.0 hypothetical protein compare
PS417_07140 -1.1 -2.1 peptidase M48 compare
PS417_21870 -1.1 -2.0 glycerophosphodiester phosphodiesterase compare
PS417_02950 -1.1 -1.6 tRNA-dihydrouridine synthase B compare
PS417_15885 -1.1 -1.0 GCN5 family acetyltransferase compare
PS417_27835 -1.1 -3.4 endoribonuclease compare
PS417_16520 -1.1 -1.8 cold-shock protein compare
PS417_27595 -1.1 -1.0 recombinase XerC compare
PS417_16160 -1.1 -1.3 ABC transporter substrate-binding protein compare
PS417_28020 -1.1 -1.7 chorismate--pyruvate lyase compare
PS417_10720 -1.1 -3.2 chemotaxis protein CheY compare
PS417_06365 -1.1 -4.5 RNA polymerase sigma factor compare
PS417_14065 -1.1 -3.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_24745 -1.1 -1.4 gamma-glutamyl phosphate reductase compare
PS417_09830 -1.1 -3.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_10245 -1.1 -1.2 hypothetical protein compare
PS417_08435 -1.1 -1.1 pilus assembly protein PilZ compare
PS417_02555 -1.1 -5.2 exoribonuclease R compare
PS417_00705 -1.0 -1.4 MarR family transcriptional regulator compare
PS417_10675 -1.0 -1.0 TetR family transcriptional regulator compare
PS417_10715 -1.0 -1.2 Cro/Cl family transcriptional regulator compare
PS417_06025 -1.0 -1.7 alpha/beta hydrolase compare
PS417_23015 -1.0 -1.7 NGG1p interacting factor 3 protein, NIF3 compare
PS417_27040 -1.0 -1.3 3-phosphoglycerate dehydrogenase compare
PS417_09625 -1.0 -1.7 sugar ABC transporter substrate-binding protein compare
PS417_09630 -1.0 -2.6 glycosyl transferase compare
PS417_06775 -1.0 -3.1 antibiotic transporter compare
PS417_07950 -1.0 -2.4 MFS transporter compare
PS417_22400 -1.0 -4.3 7-cyano-7-deazaguanine synthase compare
PS417_27295 -1.0 -1.8 hypothetical protein compare
PS417_06125 -1.0 -1.8 hypothetical protein compare
PS417_03260 -1.0 -0.9 5S ribosomal RNA compare
PS417_19350 -1.0 -2.3 GTP cyclohydrolase compare
PS417_15095 -1.0 -1.9 hypothetical protein compare
PS417_16710 -0.9 -2.2 hydrolase compare
PS417_18265 -0.9 -1.8 AsnC family transcriptional regulator compare
PS417_27360 -0.9 -2.8 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_02070 -0.9 -0.9 membrane protein compare
PS417_18755 -0.9 -1.6 CrtK compare
PS417_19415 -0.9 -2.0 allantoinase compare
PS417_16320 -0.9 -1.1 protein tyrosine phosphatase compare
PS417_22530 -0.9 -2.4 hypothetical protein compare
PS417_27305 -0.9 -2.4 5-formyltetrahydrofolate cyclo-ligase compare
PS417_28265 -0.9 -1.7 pyridoxamine kinase compare
PS417_00900 -0.9 -1.2 4-aminobutyrate aminotransferase compare
PS417_24385 -0.9 -2.2 tRNA (uracil-5-)-methyltransferase compare
PS417_01580 -0.9 -1.1 imidazole glycerol phosphate synthase compare
PS417_21425 -0.9 -0.9 4-amino-4-deoxychorismate lyase compare
PS417_17330 -0.9 -2.1 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_28510 -0.9 -2.8 chromosome partitioning protein compare
PS417_11925 -0.9 -1.1 hypothetical protein compare
PS417_25155 -0.9 -0.9 hypothetical protein compare
PS417_17675 -0.9 -1.2 ABC transporter compare
PS417_12005 -0.9 -2.1 hypothetical protein compare
PS417_05975 -0.9 -0.6 chemotaxis protein CheW compare
PS417_26805 -0.9 -0.8 cell division protein FtsE compare
PS417_12970 -0.9 -2.1 FMN-dependent NADH-azoreductase compare
PS417_22405 -0.9 -2.5 7-carboxy-7-deazaguanine synthase compare
PS417_28225 -0.9 -1.0 hypothetical protein compare
PS417_16370 -0.9 -3.4 chemotaxis protein CheY compare
PS417_15105 -0.8 -2.4 membrane protein compare
PS417_09085 -0.8 -0.9 hypothetical protein compare
PS417_02615 -0.8 -2.4 transglutaminase compare
PS417_19425 -0.8 -0.8 allantoicase compare
PS417_21475 -0.8 -1.7 HAD family hydrolase compare
PS417_17535 -0.8 -1.8 beta-lactamase compare
PS417_11545 -0.8 -1.3 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_15110 -0.8 -2.7 protein BatD compare
PS417_12540 -0.8 -1.0 hypothetical protein compare
PS417_07120 -0.8 -1.9 RNA polymerase sigma-H factor compare
PS417_11725 -0.8 -1.5 peptidase M19 compare
PS417_25180 -0.8 -1.7 hypothetical protein compare
PS417_00495 -0.8 -1.8 ABC transporter permease compare
PS417_18865 -0.8 -1.2 hypothetical protein compare
PS417_09740 -0.8 -1.9 RNA polymerase subunit sigma-24 compare
PS417_28325 -0.8 -0.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_27865 -0.8 -1.4 LysR family transcriptional regulator compare
PS417_19995 -0.8 -4.2 Long-chain fatty acid transport protein compare
PS417_02370 -0.8 -1.1 ADP-ribose pyrophosphatase compare
PS417_01565 -0.8 -2.7 imidazole glycerol phosphate synthase compare
PS417_18260 -0.8 -1.9 TetR family transcriptional regulator compare
PS417_18990 -0.8 -1.4 membrane protein compare
PS417_06075 -0.8 -0.6 hypothetical protein compare
PS417_01795 -0.8 -4.4 glucosyltransferase MdoH compare
PS417_27075 -0.8 -1.3 thiol-disulfide isomerase compare
PS417_04835 -0.8 -1.2 hemolysin D compare
PS417_26530 -0.8 -0.6 hypothetical protein compare
PS417_28015 -0.8 -1.3 rubredoxin compare
PS417_18760 -0.8 -1.4 hypothetical protein compare
PS417_03200 -0.8 -1.7 ArsR family transcriptional regulator compare
PS417_25320 -0.7 -4.9 dTDP-4-dehydrorhamnose reductase compare
PS417_01790 -0.7 -3.7 glucan biosynthesis protein G compare


Specific Phenotypes

For 1 genes in this experiment

For liquid stress Scopoletin in Pseudomonas simiae WCS417

For liquid stress Scopoletin across organisms