Experiment set33S273 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 3 mM; liquid stress

200 most detrimental genes:

  gene name fitness t score description  
PS417_19825 +3.7 27.3 ATPase AAA compare
PS417_24275 +2.7 23.9 diguanylate phosphodiesterase compare
PS417_19830 +1.7 3.4 flagellar assembly protein FliT compare
PS417_01605 +1.6 2.2 phosphoglycerate mutase compare
PS417_00915 +1.5 2.4 aminotransferase compare
PS417_01405 +1.4 3.1 sugar transporter compare
PS417_27875 +1.4 9.3 histidine kinase compare
PS417_19870 +1.2 5.2 flagellar rod assembly protein FlgJ compare
PS417_01145 +1.1 1.6 taurine transporter ATP-binding subunit compare
PS417_08125 +1.1 0.7 prephenate dehydratase compare
PS417_22570 +1.1 1.3 H-NS histone compare
PS417_22565 +1.1 0.6 formyltetrahydrofolate deformylase compare
PS417_01920 +1.1 1.3 ATP-dependent protease subunit HslV compare
PS417_19710 +1.0 4.8 flagellar biosynthesis protein FlhA compare
PS417_18055 +1.0 1.9 general secretion pathway protein GspK compare
PS417_20725 +1.0 2.2 cbb3-type cytochrome c oxidase subunit II compare
PS417_00025 +1.0 6.5 transcriptional regulator compare
PS417_01415 +1.0 6.9 glycosyl transferase family 1 compare
PS417_01410 +1.0 4.9 transporter compare
PS417_01420 +0.9 6.9 histidine kinase compare
PS417_19065 +0.9 1.4 monooxygenase compare
PS417_01395 +0.9 7.8 biofilm formation protein PelB compare
PS417_00040 +0.9 5.7 ATPase compare
PS417_00750 +0.9 5.1 N-glycosyltransferase compare
PS417_01390 +0.9 6.2 PbsX family transcriptional regulator compare
PS417_19030 +0.9 2.2 sodium:dicarboxylate symporter compare
PS417_24840 +0.9 1.5 hypothetical protein compare
PS417_14590 +0.9 1.7 LysR family transcriptional regulator compare
PS417_15650 +0.9 1.2 glutamine amidotransferase compare
PS417_06865 +0.9 2.0 transporter compare
PS417_07565 +0.9 2.0 hypothetical protein compare
PS417_19765 +0.9 7.6 flagellar hook-length control protein compare
PS417_21990 +0.9 2.9 LacI family transcriptional regulator compare
PS417_13495 +0.9 2.2 nuclease compare
PS417_22210 +0.9 1.6 AraC family transcriptional regulator compare
PS417_21555 +0.9 7.0 flagellar hook protein FlgE compare
PS417_21700 +0.8 3.6 arginine N-succinyltransferase compare
PS417_00740 +0.8 5.5 membrane protein compare
PS417_05535 +0.8 1.6 Fis family transcriptional regulator compare
PS417_19745 +0.8 3.5 flagellar assembly protein FliO compare
PS417_13090 +0.8 3.1 dienelactone hydrolase compare
PS417_00975 +0.8 1.6 hypothetical protein compare
PS417_07895 +0.8 3.1 hypothetical protein compare
PS417_19865 +0.8 6.4 flagellar hook protein FlgK compare
PS417_09695 +0.8 1.9 hydrolase compare
PS417_21565 +0.8 3.4 flagellar basal body rod protein FlgC compare
PS417_06395 +0.8 2.0 amino acid transporter compare
PS417_00745 +0.8 4.8 outer membrane N-deacetylase compare
PS417_21585 +0.8 5.5 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_14515 +0.8 1.7 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_26175 +0.8 1.1 sarcosine oxidase subunit gamma compare
PS417_19725 +0.8 3.5 flagellar biosynthesis protein FlhB compare
PS417_01965 +0.8 0.9 fimbriae biosynthesis protein compare
PS417_00195 +0.8 1.7 hypothetical protein compare
PS417_19880 +0.8 4.5 flagellar basal body L-ring protein compare
PS417_22175 +0.8 1.7 amino acid transporter LysE compare
PS417_08950 +0.7 2.2 DeoR faimly transcriptional regulator compare
PS417_21595 +0.7 2.7 flagellar biosynthesis protein FlgN compare
PS417_04705 +0.7 2.0 hypothetical protein compare
PS417_09575 +0.7 2.0 glutathione S-transferase compare
PS417_24535 +0.7 1.8 membrane protein compare
PS417_19885 +0.7 3.0 flagellar basal body rod protein FlgG compare
PS417_22315 +0.7 2.8 DNA-3-methyladenine glycosylase compare
PS417_19785 +0.7 1.9 flagellar biogenesis protein compare
PS417_17900 +0.7 1.3 transcriptional regulator compare
PS417_21570 +0.7 3.4 flagellar basal body rod protein FlgB compare
PS417_03340 +0.7 1.9 gluconate transporter compare
PS417_21430 +0.7 0.9 3-oxoacyl-ACP synthase compare
PS417_17035 +0.7 1.1 Cro/Cl family transcriptional regulator compare
PS417_24355 +0.7 1.5 MFS transporter compare
PS417_10600 +0.7 1.2 hypothetical protein compare
PS417_19755 +0.7 1.7 flagellar motor switch protein FliM compare
PS417_28040 +0.7 2.3 histidine kinase compare
PS417_28450 +0.7 1.1 XRE family transcriptional regulator compare
PS417_10335 +0.7 2.3 peroxiredoxin compare
PS417_13540 +0.7 3.2 sodium:proton antiporter compare
PS417_15495 +0.7 4.8 FAD-dependent oxidoreductase compare
PS417_22720 +0.7 2.8 membrane protein compare
PS417_26815 +0.7 1.6 peptidase M16 compare
PS417_09460 +0.7 1.5 alkanesulfonate monooxygenase compare
PS417_11195 +0.7 2.0 NAD(P)H-quinone oxidoreductase compare
PS417_22870 +0.7 1.7 lipoprotein compare
PS417_22875 +0.7 1.1 hypothetical protein compare
PS417_17865 +0.7 2.5 2-keto-3-deoxy-L-rhamnonate aldolase compare
PS417_00220 +0.7 1.1 hypothetical protein compare
PS417_10870 +0.7 1.8 GABA permease compare
PS417_00670 +0.7 1.8 RNA polymerase sigma factor compare
PS417_18730 +0.6 1.6 ABC transporter permease compare
PS417_23300 +0.6 2.2 hypothetical protein compare
PS417_25275 +0.6 2.8 hypothetical protein compare
PS417_02745 +0.6 1.4 FMN-dependent NADH-azoreductase compare
PS417_01715 +0.6 1.2 hypothetical protein compare
PS417_19840 +0.6 5.1 flagellar cap protein FliD compare
PS417_08510 +0.6 1.3 LysR family transcriptional regulator compare
PS417_19095 +0.6 0.9 hypothetical protein compare
PS417_19695 +0.6 3.6 flagellar biosynthesis sigma factor compare
PS417_08245 +0.6 0.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_12375 +0.6 1.4 serine/threonine protein phosphatase compare
PS417_17610 +0.6 0.9 AsnC family transcriptional regulator compare
PS417_13990 +0.6 1.6 LysR family transcriptional regulator compare
PS417_19860 +0.6 5.4 flagellar hook protein FlgL compare
PS417_00480 +0.6 2.8 hypothetical protein compare
PS417_14140 +0.6 1.7 membrane protein compare
PS417_27535 +0.6 3.2 chemotaxis protein CheY compare
PS417_03815 +0.6 1.3 DNA transporter compare
PS417_00635 +0.6 2.0 sulfonate ABC transporter ATP-binding protein compare
PS417_11090 +0.6 2.4 LacI family transcriptional regulator compare
PS417_22630 +0.6 1.2 hypothetical protein compare
PS417_05965 +0.6 2.3 chemotaxis protein CheW compare
PS417_06540 +0.6 0.8 membrane protein compare
PS417_14285 +0.6 1.3 hypothetical protein compare
PS417_15275 +0.6 2.9 type VI secretion protein compare
PS417_19795 +0.6 5.2 flagellar assembly protein FliH compare
PS417_01735 +0.6 1.3 ABC transporter permease compare
PS417_01400 +0.6 2.1 hypothetical protein compare
PS417_19760 +0.6 2.6 flagellar basal body protein FliL compare
PS417_18200 +0.6 0.7 glyoxalase compare
PS417_06455 +0.6 2.2 Fe(II)-dependent oxygenase compare
PS417_19720 +0.6 1.1 DNA-binding protein compare
PS417_28295 +0.6 1.7 glutamine synthetase compare
PS417_12910 +0.6 1.5 alanine racemase compare
PS417_27005 +0.6 0.8 membrane protein compare
PS417_27100 +0.6 1.4 phosphohydrolase compare
PS417_04950 +0.6 1.8 hypothetical protein compare
PS417_09655 +0.6 2.0 RNA polymerase sigma factor compare
PS417_12830 +0.6 2.6 LysR family transcriptional regulator compare
PS417_15915 +0.6 0.9 hypothetical protein compare
PS417_22060 +0.6 0.4 hypothetical protein compare
PS417_19730 +0.6 2.3 flagellar biosynthesis protein FliR compare
PS417_22945 +0.6 1.4 phosphoribosylglycinamide formyltransferase compare
PS417_05120 +0.6 1.4 RNA polymerase subunit sigma-24 compare
PS417_12730 +0.6 1.5 glycosyltransferase compare
PS417_08485 +0.6 2.6 alpha/beta hydrolase compare
PS417_12755 +0.6 1.9 RND transporter compare
PS417_24155 +0.6 0.6 ATP-binding protein compare
PS417_26145 +0.5 1.0 hypothetical protein compare
PS417_17995 +0.5 1.7 hypothetical protein compare
PS417_15005 +0.5 1.2 hypothetical protein compare
PS417_19195 +0.5 1.6 hypothetical protein compare
PS417_15065 +0.5 0.9 GntR family transcriptional regulator compare
PS417_19490 +0.5 2.1 mechanosensitive ion channel protein compare
PS417_17125 +0.5 1.4 transcriptional regulator compare
PS417_04185 +0.5 1.0 hypothetical protein compare
PS417_08265 +0.5 2.2 hypothetical protein compare
PS417_03970 +0.5 1.1 1-phosphofructokinase compare
PS417_22660 +0.5 1.4 hypothetical protein compare
PS417_21360 +0.5 0.7 termination factor Rho compare
PS417_03810 +0.5 1.5 hypothetical protein compare
PS417_02760 +0.5 2.0 AraC family transcriptional regulator compare
PS417_25650 +0.5 2.0 anhydro-N-acetylmuramic acid kinase compare
PS417_24430 +0.5 1.0 3-dehydroquinate dehydratase compare
PS417_28405 +0.5 1.2 hypothetical protein compare
PS417_17890 +0.5 1.3 3-oxoacyl-ACP reductase compare
PS417_05140 +0.5 1.2 dipicolinate synthase compare
PS417_19360 +0.5 1.3 hypothetical protein compare
PS417_23355 +0.5 2.3 4-aminobutyrate aminotransferase compare
PS417_27990 +0.5 1.9 hypothetical protein compare
PS417_22085 +0.5 1.3 aldehyde dehydrogenase compare
PS417_02440 +0.5 1.6 flagellar motor protein MotB compare
PS417_06245 +0.5 0.6 zinc metallopeptidase RseP compare
PS417_24310 +0.5 1.6 ankyrin compare
PS417_11950 +0.5 1.0 hypothetical protein compare
PS417_16845 +0.5 0.8 monovalent cation/H+ antiporter subunit E compare
PS417_03045 +0.5 1.1 hypothetical protein compare
PS417_01360 +0.5 1.7 4-oxalocrotonate tautomerase compare
PS417_28220 +0.5 1.2 LysR family transcriptional regulator compare
PS417_05065 +0.5 1.0 hypothetical protein compare
PS417_15770 +0.5 0.8 pyridoxine 5'-phosphate oxidase compare
PS417_28275 +0.5 1.7 cobalamin biosynthesis protein CobW compare
PS417_24260 +0.5 2.5 glutamate dehydrogenase compare
PS417_17065 +0.5 0.9 catalase compare
PS417_10930 +0.5 2.1 D-xylose ABC transporter permease compare
PS417_04525 +0.5 2.9 16S rRNA methyltransferase compare
PS417_09160 +0.5 1.5 GNAT family acetyltransferase compare
PS417_16680 +0.5 1.2 MFS transporter compare
PS417_19740 +0.5 2.7 flagellar biosynthesis protein flip compare
PS417_04915 +0.5 1.2 glutamine ABC transporter ATP-binding protein compare
PS417_18450 +0.5 1.8 hydrolase compare
PS417_16715 +0.5 0.6 DoxX family protein compare
PS417_05900 +0.5 1.1 TetR family transcriptional regulator compare
PS417_04945 +0.5 1.8 fimbrial chaperone protein compare
PS417_15535 +0.5 1.3 oxidoreductase compare
PS417_26245 +0.5 2.2 hypothetical protein compare
PS417_19440 +0.5 1.1 purine permease compare
PS417_28145 +0.5 0.9 AraC family transcriptional regulator compare
PS417_08605 +0.5 2.6 response regulator compare
PS417_17630 +0.5 1.7 RNA polymerase sigma factor compare
PS417_12265 +0.5 1.6 ACP phosphodiesterase compare
PS417_07190 +0.5 1.6 MFS transporter compare
PS417_15820 +0.5 1.4 universal stress protein UspA compare
PS417_00390 +0.5 2.3 ABC transporter substrate-binding protein compare
PS417_06040 +0.5 1.4 hypothetical protein compare
PS417_09930 +0.5 0.7 hypothetical protein compare
PS417_27490 +0.5 0.4 hypothetical protein compare
PS417_05710 +0.5 1.7 hypothetical protein compare
PS417_18400 +0.5 1.6 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_22005 +0.5 1.5 epimerase compare
PS417_26685 +0.5 1.0 hypothetical protein compare
PS417_11480 +0.5 1.1 hypothetical protein compare
PS417_00940 +0.5 1.6 sulfate ABC transporter permease compare


Specific Phenotypes

For 1 genes in this experiment

For liquid stress Scopoletin in Pseudomonas simiae WCS417

For liquid stress Scopoletin across organisms