Experiment set33S266 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_24800 -7.1 -4.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_11460 -6.7 -4.6 divalent metal cation transporter MntH compare
PS417_28085 -6.4 -7.0 phosphate-binding protein compare
PS417_10645 -6.3 -12.8 magnesium ABC transporter ATPase compare
PS417_06775 -6.2 -4.3 antibiotic transporter compare
PS417_28070 -6.1 -7.3 phosphate ABC transporter ATP-binding protein compare
PS417_28080 -5.9 -16.2 phosphate ABC transporter permease compare
PS417_01955 -5.7 -6.8 peptidase compare
PS417_00665 -5.5 -7.0 RND transporter compare
PS417_28075 -5.4 -6.5 phosphate ABC transporter permease compare
PS417_16370 -5.3 -7.7 chemotaxis protein CheY compare
PS417_27865 -5.2 -3.6 LysR family transcriptional regulator compare
PS417_27290 -5.2 -3.6 hypothetical protein compare
PS417_06770 -5.2 -3.6 multidrug transporter compare
PS417_24705 -5.1 -3.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_26500 -5.1 -4.9 thioesterase compare
PS417_15090 -5.0 -3.2 hypothetical protein compare
PS417_02990 -4.9 -3.4 hypothetical protein compare
PS417_13870 -4.8 -4.2 hypothetical protein compare
PS417_06335 -4.7 -3.3 S-formylglutathione hydrolase compare
PS417_00440 -4.7 -7.2 N-acetylmuramoyl-L-alanine amidase compare
PS417_02225 -4.6 -3.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23385 -4.5 -6.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_00660 -4.5 -3.1 DSBA oxidoreductase compare
PS417_00475 -4.5 -5.4 membrane protein compare
PS417_03830 -4.4 -8.6 protein disaggregation chaperone compare
PS417_12595 -4.4 -2.6 transcriptional regulator compare
PS417_21625 -4.3 -1.8 DNA-binding protein compare
PS417_26365 -4.2 -4.0 EmrB/QacA subfamily drug resistance transporter compare
PS417_15075 -4.1 -10.8 NAD-glutamate dehydrogenase compare
PS417_03625 -4.1 -6.8 lipid A 3-O-deacylase compare
PS417_02270 -4.1 -2.8 carbamoyltransferase compare
PS417_00650 -4.1 -1.7 LysR family transcriptional regulator compare
PS417_06330 -4.0 -2.9 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_06365 -3.9 -8.0 RNA polymerase sigma factor compare
PS417_28050 -3.9 -3.1 hypothetical protein compare
PS417_22690 -3.9 -3.8 phosphogluconate dehydratase compare
PS417_05590 -3.8 -5.0 iron ABC transporter ATP-binding protein compare
PS417_23995 -3.8 -1.6 preprotein translocase subunit SecG compare
PS417_17215 -3.8 -2.6 peptidylprolyl isomerase compare
PS417_15135 -3.7 -2.1 hypothetical protein compare
PS417_07515 -3.7 -12.3 aconitate hydratase compare
PS417_23950 -3.7 -2.5 polynucleotide phosphorylase/polyadenylase compare
PS417_25405 -3.6 -11.9 catalase compare
PS417_00755 -3.6 -1.5 biofilm PGA synthesis protein PgaD compare
PS417_08170 -3.6 -9.3 capsular biosynthesis protein compare
PS417_19705 -3.5 -3.3 flagellar biosynthesis regulator FlhF compare
PS417_23370 -3.5 -4.1 protoheme IX farnesyltransferase compare
PS417_02255 -3.5 -3.1 lipopolysaccharide kinase compare
PS417_10720 -3.5 -5.3 chemotaxis protein CheY compare
PS417_23390 -3.4 -5.8 ubiquinol oxidase subunit II compare
PS417_05595 -3.4 -9.4 ornithine carbamoyltransferase compare
PS417_06530 -3.4 -3.3 membrane protein compare
PS417_05365 -3.3 -2.3 FAD-binding protein compare
PS417_22735 -3.3 -8.6 thiol oxidoreductase compare
PS417_27295 -3.3 -5.5 hypothetical protein compare
PS417_23375 -3.3 -1.6 cytochrome C oxidase compare
PS417_12695 -3.2 -3.2 mannitol dehydrogenase compare
PS417_19350 -3.2 -4.1 GTP cyclohydrolase compare
PS417_00655 -3.2 -5.2 DSBA oxidoreductase compare
PS417_07140 -3.2 -2.7 peptidase M48 compare
PS417_08155 -3.2 -2.2 integration host factor subunit beta compare
PS417_11485 -3.2 -2.6 AraC family transcriptional regulator compare
PS417_27870 -3.2 -2.2 ATP-dependent DNA helicase RecG compare
PS417_05975 -3.1 -1.3 chemotaxis protein CheW compare
PS417_22745 -3.1 -4.7 hypothetical protein compare
PS417_07165 -3.1 -4.1 dihydrodipicolinate synthase compare
PS417_24585 -3.1 -9.0 AMP nucleosidase compare
PS417_21320 -3.0 -4.6 transcriptional regulator compare
PS417_06680 -3.0 -2.1 nuclease PIN compare
PS417_09470 -3.0 -1.6 hypothetical protein compare
PS417_26985 -3.0 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_04420 -3.0 -6.6 histidinol dehydrogenase compare
PS417_02555 -2.9 -6.6 exoribonuclease R compare
PS417_03300 -2.9 -2.8 alanine acetyltransferase compare
PS417_05885 -2.9 -6.2 potassium transporter Kup compare
PS417_27110 -2.9 -4.0 spermidine/putrescine ABC transporter permease compare
PS417_07565 -2.9 -2.3 hypothetical protein compare
PS417_00045 -2.9 -1.7 glycerol acyltransferase compare
PS417_08360 -2.8 -2.1 DoxX family protein compare
PS417_27435 -2.8 -4.9 polyphosphate kinase compare
PS417_02485 -2.8 -4.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27605 -2.8 -5.7 hypothetical protein compare
PS417_01550 -2.8 -7.2 cell envelope biogenesis protein AsmA compare
PS417_14045 -2.7 -3.8 alkyl hydroperoxide reductase compare
PS417_13490 -2.7 -1.8 hypothetical protein compare
PS417_16555 -2.7 -1.9 cupin compare
PS417_23915 -2.7 -3.7 pantoate--beta-alanine ligase compare
PS417_01575 -2.7 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_22195 -2.7 -3.4 peptidase compare
PS417_07615 -2.7 -5.1 TetR family transcriptional regulator compare
PS417_06205 -2.7 -7.3 methionine aminopeptidase compare
PS417_22450 -2.6 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_25400 -2.6 -5.4 bacterioferritin compare
PS417_08310 -2.5 -3.2 alpha/beta hydrolase compare
PS417_16490 -2.5 -1.4 cell division protein FtsK compare
PS417_23380 -2.5 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_05535 -2.5 -1.8 Fis family transcriptional regulator compare
PS417_00345 -2.5 -2.4 copper-binding protein compare
PS417_10995 -2.5 -2.9 GntR family transcriptional regulator compare
PS417_25815 -2.5 -4.1 magnesium transporter ApaG compare
PS417_04585 -2.5 -1.5 hypothetical protein compare
PS417_27795 -2.5 -1.0 orotate phosphoribosyltransferase compare
PS417_06245 -2.4 -1.7 zinc metallopeptidase RseP compare
PS417_23615 -2.4 -2.8 sulfate transporter compare
PS417_03455 -2.4 -2.3 type III secretion protein compare
PS417_05650 -2.4 -2.4 leucyl-tRNA synthetase compare
PS417_03990 -2.4 -9.2 ligand-gated channel protein compare
PS417_17545 -2.3 -2.0 2-oxoisovalerate dehydrogenase compare
PS417_16310 -2.3 -3.8 membrane protein compare
PS417_19655 -2.3 -3.6 chemotaxis protein CheW compare
PS417_21430 -2.3 -1.6 3-oxoacyl-ACP synthase compare
PS417_22620 -2.3 -3.3 pyruvate kinase compare
PS417_01950 -2.3 -4.1 malate dehydrogenase compare
PS417_24885 -2.2 -2.6 transcriptional regulator compare
PS417_15800 -2.2 -4.9 photosynthetic protein synthase I compare
PS417_03260 -2.2 -1.2 5S ribosomal RNA compare
PS417_23900 -2.2 -6.8 poly(A) polymerase compare
PS417_02510 -2.2 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27640 -2.2 -1.3 TetR family transcriptional regulator compare
PS417_04385 -2.2 -1.5 organic solvent ABC transporter substrate-binding protein compare
PS417_09325 -2.2 -3.6 peptidase S41 compare
PS417_07510 -2.2 -4.2 aspartyl beta-hydroxylase compare
PS417_28515 -2.2 -3.3 16S rRNA methyltransferase compare
PS417_18105 -2.1 -1.8 iron-dicitrate transporter substrate-binding subunit compare
PS417_27515 -2.1 -3.3 heme biosynthesis protein HemY compare
PS417_24745 -2.1 -2.1 gamma-glutamyl phosphate reductase compare
PS417_09695 -2.1 -2.1 hydrolase compare
PS417_02975 -2.1 -3.0 3-dehydroquinate dehydratase compare
PS417_07470 -2.1 -1.9 hypothetical protein compare
PS417_11945 -2.1 -3.1 hypothetical protein compare
PS417_06370 -2.1 -1.7 cold-shock protein compare
PS417_01850 -2.1 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27005 -2.1 -1.2 membrane protein compare
PS417_04415 -2.0 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18360 -2.0 -2.3 hypothetical protein compare
PS417_27520 -2.0 -3.4 uroporphyrin-III methyltransferase compare
PS417_01915 -2.0 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_16815 -2.0 -2.2 acyl-CoA dehydrogenase compare
PS417_22775 -2.0 -6.8 histidine kinase compare
PS417_26805 -2.0 -1.2 cell division protein FtsE compare
PS417_09245 -2.0 -1.5 recombinase RdgC compare
PS417_27610 -2.0 -5.7 hypothetical protein compare
PS417_15975 -1.9 -1.8 glutamate carboxypeptidase compare
PS417_03000 -1.9 -2.9 translation initiation factor Sui1 compare
PS417_24935 -1.9 -1.1 hypothetical protein compare
PS417_18355 -1.9 -6.0 DNA-binding protein compare
PS417_26775 -1.9 -5.2 thiazole synthase compare
PS417_05815 -1.9 -3.0 recombinase RecA compare
PS417_01920 -1.9 -1.0 ATP-dependent protease subunit HslV compare
PS417_01605 -1.9 -1.3 phosphoglycerate mutase compare
PS417_22270 -1.9 -3.4 hypothetical protein compare
PS417_04365 -1.9 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19425 -1.9 -1.1 allantoicase compare
PS417_04960 -1.9 -1.4 hypothetical protein compare
PS417_01560 -1.8 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_00900 -1.8 -2.4 4-aminobutyrate aminotransferase compare
PS417_28225 -1.8 -1.3 hypothetical protein compare
PS417_27245 -1.8 -1.2 aminotransferase DegT compare
PS417_19065 -1.8 -1.0 monooxygenase compare
PS417_23360 -1.8 -1.0 hypothetical protein compare
PS417_27585 -1.8 -1.7 diaminopimelate epimerase compare
PS417_10335 -1.8 -2.3 peroxiredoxin compare
PS417_10330 -1.7 -2.3 histidine kinase compare
PS417_13885 -1.7 -2.3 chemotaxis protein CheY compare
PS417_17240 -1.7 -1.6 trigger factor compare
PS417_01580 -1.7 -1.4 imidazole glycerol phosphate synthase compare
PS417_22065 -1.7 -5.0 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_05820 -1.7 -1.8 recombinase RecX compare
PS417_21695 -1.7 -2.3 succinylglutamate-semialdehyde dehydrogenase compare
PS417_01855 -1.7 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_18310 -1.7 -1.1 hypothetical protein compare
PS417_23105 -1.7 -1.5 hypothetical protein compare
PS417_26990 -1.7 -1.0 RNA pyrophosphohydrolase compare
PS417_27125 -1.7 -5.4 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_27835 -1.7 -4.2 endoribonuclease compare
PS417_03995 -1.6 -2.0 Fe(II)-dependent oxygenase compare
PS417_00185 -1.6 -2.5 tryptophan synthase subunit beta compare
PS417_11705 -1.6 -4.3 cyclic peptide transporter compare
PS417_07695 -1.6 -3.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_01275 -1.6 -2.7 LysR family transcriptional regulator compare
PS417_26995 -1.6 -4.4 phosphoserine phosphatase compare
PS417_18055 -1.6 -1.1 general secretion pathway protein GspK compare
PS417_17610 -1.6 -1.5 AsnC family transcriptional regulator compare
PS417_12840 -1.6 -1.8 TetR family transcriptional regulator compare
PS417_18690 -1.6 -2.5 aromatic amino acid aminotransferase compare
PS417_01565 -1.6 -2.2 imidazole glycerol phosphate synthase compare
PS417_06200 -1.6 -4.0 protein-PII uridylyltransferase compare
PS417_06350 -1.6 -4.4 stationary phase survival protein SurE compare
PS417_27255 -1.6 -5.2 glycine cleavage system protein T compare
PS417_04590 -1.6 -3.2 methyltransferase compare
PS417_21400 -1.6 -3.4 TetR family transcriptional regulator compare
PS417_00455 -1.6 -1.7 hypothetical protein compare
PS417_27505 -1.6 -3.4 transcriptional regulator compare
PS417_06325 -1.6 -4.9 LysR family transcriptional regulator compare
PS417_22740 -1.6 -4.3 imelysin compare
PS417_07550 -1.6 -2.7 lytic transglycosylase compare
PS417_07170 -1.6 -2.3 hypothetical protein compare
PS417_27070 -1.6 -4.5 alpha/beta hydrolase compare
PS417_12655 -1.6 -2.4 methionine aminopeptidase compare


Specific Phenotypes

For 26 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms