Experiment set33S265 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 2 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28070 -7.5 -5.2 phosphate ABC transporter ATP-binding protein compare
PS417_28080 -6.4 -17.9 phosphate ABC transporter permease compare
PS417_28075 -5.8 -5.6 phosphate ABC transporter permease compare
PS417_02255 -5.7 -3.9 lipopolysaccharide kinase compare
PS417_27865 -5.4 -3.7 LysR family transcriptional regulator compare
PS417_27290 -5.4 -3.7 hypothetical protein compare
PS417_11460 -5.2 -8.7 divalent metal cation transporter MntH compare
PS417_28085 -5.0 -7.1 phosphate-binding protein compare
PS417_02225 -4.8 -3.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_01270 -4.7 -3.0 iron ABC transporter substrate-binding protein compare
PS417_06330 -4.4 -3.2 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_00650 -4.1 -1.9 LysR family transcriptional regulator compare
PS417_28050 -4.1 -3.4 hypothetical protein compare
PS417_06775 -4.1 -6.8 antibiotic transporter compare
PS417_06685 -4.0 -1.8 beta-ketoadipyl CoA thiolase compare
PS417_10645 -4.0 -9.3 magnesium ABC transporter ATPase compare
PS417_23915 -3.8 -3.7 pantoate--beta-alanine ligase compare
PS417_00755 -3.7 -1.7 biofilm PGA synthesis protein PgaD compare
PS417_21480 -3.6 -2.5 23S rRNA pseudouridylate synthase compare
PS417_08155 -3.4 -2.4 integration host factor subunit beta compare
PS417_23375 -3.4 -1.8 cytochrome C oxidase compare
PS417_26500 -3.3 -3.6 thioesterase compare
PS417_06770 -3.2 -6.2 multidrug transporter compare
PS417_09420 -3.2 -3.1 LysR family transcriptional regulator compare
PS417_24605 -3.2 -3.8 thiamine-phosphate pyrophosphorylase compare
PS417_00045 -3.1 -2.0 glycerol acyltransferase compare
PS417_23385 -3.1 -6.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_02485 -3.1 -4.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_25405 -3.0 -10.3 catalase compare
PS417_22445 -3.0 -2.1 ATP-dependent DNA helicase RuvB compare
PS417_05590 -3.0 -6.5 iron ABC transporter ATP-binding protein compare
PS417_09245 -3.0 -1.7 recombinase RdgC compare
PS417_01955 -2.9 -8.4 peptidase compare
PS417_22450 -2.8 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_14045 -2.8 -5.0 alkyl hydroperoxide reductase compare
PS417_06335 -2.7 -3.5 S-formylglutathione hydrolase compare
PS417_13870 -2.6 -2.7 hypothetical protein compare
PS417_23370 -2.6 -3.8 protoheme IX farnesyltransferase compare
PS417_00655 -2.6 -5.7 DSBA oxidoreductase compare
PS417_05365 -2.6 -2.5 FAD-binding protein compare
PS417_17215 -2.5 -3.0 peptidylprolyl isomerase compare
PS417_06680 -2.5 -3.8 nuclease PIN compare
PS417_27795 -2.5 -1.1 orotate phosphoribosyltransferase compare
PS417_26175 -2.4 -1.5 sarcosine oxidase subunit gamma compare
PS417_05325 -2.4 -2.2 fimbrial protein compare
PS417_06530 -2.4 -2.4 membrane protein compare
PS417_00665 -2.3 -4.3 RND transporter compare
PS417_17070 -2.3 -2.1 RNA polymerase subunit sigma-24 compare
PS417_05595 -2.2 -7.8 ornithine carbamoyltransferase compare
PS417_23390 -2.2 -4.9 ubiquinol oxidase subunit II compare
PS417_03830 -2.2 -6.4 protein disaggregation chaperone compare
PS417_24935 -2.2 -1.4 hypothetical protein compare
PS417_01560 -2.1 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_27870 -2.1 -2.0 ATP-dependent DNA helicase RecG compare
PS417_01915 -2.1 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_04365 -2.0 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_06200 -2.0 -5.1 protein-PII uridylyltransferase compare
PS417_04390 -2.0 -2.4 toluene tolerance protein compare
PS417_00345 -2.0 -1.7 copper-binding protein compare
PS417_27435 -2.0 -4.0 polyphosphate kinase compare
PS417_01920 -2.0 -1.1 ATP-dependent protease subunit HslV compare
PS417_02885 -2.0 -1.5 hypothetical protein compare
PS417_24615 -2.0 -1.8 hypothetical protein compare
PS417_18310 -1.9 -1.3 hypothetical protein compare
PS417_23105 -1.9 -1.9 hypothetical protein compare
PS417_01580 -1.9 -1.7 imidazole glycerol phosphate synthase compare
PS417_08130 -1.9 -1.8 aspartate aminotransferase compare
PS417_02555 -1.9 -9.5 exoribonuclease R compare
PS417_28325 -1.9 -1.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_04185 -1.9 -1.7 hypothetical protein compare
PS417_17645 -1.9 -2.2 RND transporter compare
PS417_24800 -1.9 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_26985 -1.9 -3.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08090 -1.9 -1.1 3-oxoacyl-ACP reductase compare
PS417_21425 -1.8 -2.0 4-amino-4-deoxychorismate lyase compare
PS417_06365 -1.8 -6.6 RNA polymerase sigma factor compare
PS417_00660 -1.8 -2.4 DSBA oxidoreductase compare
PS417_08170 -1.8 -7.0 capsular biosynthesis protein compare
PS417_27815 -1.8 -2.1 hypothetical protein compare
PS417_27945 -1.8 -2.0 type VI secretion protein ImpA compare
PS417_19940 -1.8 -7.8 membrane protein compare
PS417_20130 -1.8 -7.9 dehydrogenase compare
PS417_05160 -1.8 -1.3 DNA polymerase III subunit chi compare
PS417_24600 -1.7 -4.5 hydrogenase compare
PS417_26420 -1.7 -1.9 hypothetical protein compare
PS417_26990 -1.7 -1.1 RNA pyrophosphohydrolase compare
PS417_22735 -1.7 -5.8 thiol oxidoreductase compare
PS417_07170 -1.7 -3.0 hypothetical protein compare
PS417_04380 -1.7 -1.1 ABC transporter permease compare
PS417_27195 -1.7 -1.5 N-acetylglutamate synthase compare
PS417_27605 -1.7 -5.0 hypothetical protein compare
PS417_24585 -1.7 -6.9 AMP nucleosidase compare
PS417_15800 -1.6 -4.8 photosynthetic protein synthase I compare
PS417_01855 -1.6 -2.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_23810 -1.6 -6.0 acetolactate synthase 3 catalytic subunit compare
PS417_22195 -1.6 -3.0 peptidase compare
PS417_10025 -1.6 -1.8 bacteriophage lambda NinG family protein compare
PS417_15075 -1.6 -6.7 NAD-glutamate dehydrogenase compare
PS417_23380 -1.6 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_00440 -1.6 -4.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_06245 -1.6 -1.5 zinc metallopeptidase RseP compare
PS417_26365 -1.5 -1.4 EmrB/QacA subfamily drug resistance transporter compare
PS417_22620 -1.5 -3.4 pyruvate kinase compare
PS417_08685 -1.5 -1.6 flagellar hook-length control protein FliK compare
PS417_02975 -1.5 -2.6 3-dehydroquinate dehydratase compare
PS417_27295 -1.5 -4.9 hypothetical protein compare
PS417_12695 -1.5 -3.8 mannitol dehydrogenase compare
PS417_16360 -1.5 -2.1 histidine kinase compare
PS417_21400 -1.5 -3.8 TetR family transcriptional regulator compare
PS417_04595 -1.5 -1.6 cell division protein MraZ compare
PS417_03560 -1.5 -1.4 GTP-binding protein compare
PS417_06375 -1.4 -0.6 deoxycytidine triphosphate deaminase compare
PS417_02805 -1.4 -1.3 urease subunit gamma compare
PS417_19095 -1.4 -1.1 hypothetical protein compare
PS417_21655 -1.4 -1.3 aspartate kinase compare
PS417_08125 -1.4 -0.6 prephenate dehydratase compare
PS417_23995 -1.4 -0.9 preprotein translocase subunit SecG compare
PS417_01575 -1.4 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_22565 -1.4 -0.6 formyltetrahydrofolate deformylase compare
PS417_03990 -1.4 -6.9 ligand-gated channel protein compare
PS417_06040 -1.4 -1.8 hypothetical protein compare
PS417_21695 -1.4 -2.2 succinylglutamate-semialdehyde dehydrogenase compare
PS417_19520 -1.4 -1.3 transcriptional regulator compare
PS417_09695 -1.3 -2.0 hydrolase compare
PS417_19705 -1.3 -1.8 flagellar biosynthesis regulator FlhF compare
PS417_00550 -1.3 -1.0 hypothetical protein compare
PS417_00900 -1.3 -1.5 4-aminobutyrate aminotransferase compare
PS417_01550 -1.3 -2.9 cell envelope biogenesis protein AsmA compare
PS417_22690 -1.3 -2.6 phosphogluconate dehydratase compare
PS417_12595 -1.3 -1.7 transcriptional regulator compare
PS417_05815 -1.3 -2.8 recombinase RecA compare
PS417_26775 -1.3 -4.0 thiazole synthase compare
PS417_27300 -1.3 -0.8 cell division protein ZapA compare
PS417_10245 -1.3 -1.0 hypothetical protein compare
PS417_18690 -1.3 -2.0 aromatic amino acid aminotransferase compare
PS417_11940 -1.2 -7.0 TonB-dependent receptor compare
PS417_02990 -1.2 -2.0 hypothetical protein compare
PS417_25720 -1.2 -4.3 anthranilate synthase component II compare
PS417_00475 -1.2 -3.1 membrane protein compare
PS417_04420 -1.2 -4.7 histidinol dehydrogenase compare
PS417_20610 -1.2 -1.2 hypothetical protein compare
PS417_22570 -1.2 -0.8 H-NS histone compare
PS417_15090 -1.2 -1.9 hypothetical protein compare
PS417_02160 -1.2 -1.1 hypothetical protein compare
PS417_25400 -1.2 -4.8 bacterioferritin compare
PS417_01620 -1.2 -2.0 preprotein translocase subunit SecB compare
PS417_27705 -1.2 -1.3 amino acid dehydrogenase compare
PS417_11400 -1.2 -1.4 phosphoglycerate mutase compare
PS417_13895 -1.2 -2.3 chemotaxis protein CheB compare
PS417_21430 -1.2 -1.1 3-oxoacyl-ACP synthase compare
PS417_27245 -1.2 -1.4 aminotransferase DegT compare
PS417_27425 -1.2 -4.4 exopolyphosphatase compare
PS417_08740 -1.2 -2.1 ribose-phosphate pyrophosphokinase compare
PS417_22745 -1.2 -3.0 hypothetical protein compare
PS417_26335 -1.2 -1.4 BetI family transcriptional regulator compare
PS417_05820 -1.2 -1.3 recombinase RecX compare
PS417_06205 -1.2 -4.4 methionine aminopeptidase compare
PS417_19125 -1.1 -1.7 LysR family transcriptional regulator compare
PS417_07470 -1.1 -1.0 hypothetical protein compare
PS417_16310 -1.1 -1.9 membrane protein compare
PS417_13620 -1.1 -1.3 thermostable hemolysin compare
PS417_19480 -1.1 -3.3 aminopeptidase compare
PS417_06325 -1.1 -4.4 LysR family transcriptional regulator compare
PS417_21625 -1.1 -0.9 DNA-binding protein compare
PS417_12735 -1.1 -1.6 peroxidase compare
PS417_07510 -1.1 -2.7 aspartyl beta-hydroxylase compare
PS417_01565 -1.1 -3.5 imidazole glycerol phosphate synthase compare
PS417_09625 -1.1 -0.9 sugar ABC transporter substrate-binding protein compare
PS417_11950 -1.1 -1.2 hypothetical protein compare
PS417_25730 -1.1 -3.2 phosphoglycolate phosphatase compare
PS417_01825 -1.1 -1.5 chemotaxis protein compare
PS417_27610 -1.1 -5.0 hypothetical protein compare
PS417_28280 -1.1 -2.0 hypothetical protein compare
PS417_03785 -1.1 -1.9 pilus assembly protein PilV compare
PS417_23805 -1.1 -2.3 acetolactate synthase 3 regulatory subunit compare
PS417_08045 -1.1 -1.6 uracil permease compare
PS417_15450 -1.1 -2.4 ABC transporter permease compare
PS417_02880 -1.1 -1.1 copper chaperone compare
PS417_23900 -1.0 -4.2 poly(A) polymerase compare
PS417_19350 -1.0 -1.6 GTP cyclohydrolase compare
PS417_09590 -1.0 -2.8 membrane protein compare
PS417_08360 -1.0 -1.9 DoxX family protein compare
PS417_03260 -1.0 -0.9 5S ribosomal RNA compare
PS417_02270 -1.0 -1.9 carbamoyltransferase compare
PS417_26530 -1.0 -0.6 hypothetical protein compare
PS417_05710 -1.0 -1.4 hypothetical protein compare
PS417_22535 -1.0 -3.0 ornithine acetyltransferase compare
PS417_26390 -1.0 -1.1 acyltransferase compare
PS417_19835 -1.0 -0.6 flagellar biosynthesis protein FliS compare
PS417_09595 -1.0 -2.6 membrane protein compare
PS417_27555 -1.0 -1.3 DNA-binding protein compare
PS417_23775 -1.0 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_25700 -1.0 -1.8 cyclic AMP receptor protein compare
PS417_06100 -1.0 -1.3 SAM-dependent methyltransferase compare
PS417_18355 -1.0 -2.9 DNA-binding protein compare
PS417_03000 -1.0 -1.5 translation initiation factor Sui1 compare
PS417_08540 -1.0 -1.3 RNA helicase compare
PS417_01950 -0.9 -2.9 malate dehydrogenase compare
PS417_24460 -0.9 -1.4 hypothetical protein compare
PS417_05210 -0.9 -3.5 copper oxidase compare


Specific Phenotypes

For 9 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms