Experiment set33S265 for Pseudomonas simiae WCS417

Fraxetin 2 mM; solid stress

Group: solid stress
Media: + Fraxetin (2 mM)
Culturing: fluoroDangl_ML3b, (Solid)
By: Max Stassen on 29-Mar-24

Specific Phenotypes

For 9 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms

SEED Subsystems

Subsystem	#Specific
Iron acquisition in Vibrio	2
Transport of Iron	2
Coenzyme B12 biosynthesis	1
Glutamate dehydrogenases	1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	1
Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria	1
Oxidative stress	1
Photorespiration (oxidative C2 cycle)	1
Transport of Manganese	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glutamate metabolism
• Arginine and proline metabolism
• Tryptophan metabolism
• Methane metabolism
• Nitrogen metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-glutamate degradation I	1	1	1
superoxide radicals degradation	2	2	1
methanol oxidation to formaldehyde IV	2	1	1
L-alanine degradation II (to D-lactate)	3	3	1
ethanol degradation IV	3	3	1
ethene biosynthesis IV (engineered)	3	1	1
reactive oxygen species degradation	4	4	1
L-glutamate degradation XI (reductive Stickland reaction)	7	3	1
4-aminobutanoate degradation V	7	2	1
L-glutamate degradation V (via hydroxyglutarate)	10	6	1
methylaspartate cycle	19	10	1